mRNA_Ecto-sp13_S_contig10565.525.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10565.525.1 vs. uniprot
Match: A0A6H5KNI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNI6_9PHAE) HSP 1 Score: 197 bits (501), Expect = 3.840e-52 Identity = 106/171 (61.99%), Postives = 119/171 (69.59%), Query Frame = 1
Query: 1 GNSKCLDAFTVALNQACDGHKKRWYVSTMELQLVSLEFCGACRSVQTLDVRVVAHTSPSLWPARQSHTTPGRHGPEVSISSRVPAVQAFGLTWALQMEFLVETSAIELWAESGDLRL-TWSAAASQGSVIWPQQLKRLVFASDMPVNVATXXXXXXXXXXGDDFNQSIAEV 510
GNSKCLDAF VALNQACDG +KRWYVST+ELQLVSLE CGACR VQTL VRV T PSLW Q+HTT P+V ISSRVP VQAFGLTWAL M L + SA E+ + SG R T S+AAS S +WPQ+LKR+VF SDM VN A+ G FNQ+I V
Sbjct: 5 GNSKCLDAFVVALNQACDGQEKRWYVSTLELQLVSLEVCGACRRVQTLHVRVKPQTPPSLWFPSQNHTTTNNRSPKVCISSRVPVVQAFGLTWALPMGVLQQRSATEVRSGSGCRRANTHSSAASLESAVWPQRLKRMVFESDMTVNTASWPASLQQLSFGCGFNQAIVGV 175
BLAST of mRNA_Ecto-sp13_S_contig10565.525.1 vs. uniprot
Match: A0A6H5KLV1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLV1_9PHAE) HSP 1 Score: 169 bits (429), Expect = 2.320e-44 Identity = 93/167 (55.69%), Postives = 112/167 (67.07%), Query Frame = 1
Query: 1 GNSKCLDAFTVALNQACDGHKKRWYVSTMELQLVSLEFCGACRSVQTLDVRVVAHTSPSLWPARQSHTTPGRHGPEVSISSRVPAVQAFGLTWALQMEFLVETSAIELWAESGDLRLTW-SAAASQGSVIWPQQ-LKRLVFASDMPVNVATXXXXXXXXXXGDDFNQ 495
G S+CL AF VALNQ C+G +KRWY ST+ELQLVSLEFCGACR V TL VRV T SLW +SH T + E +S+RVPAVQA GLTWAL ME L++TSA+EL + S R++ S+ AS GS+ W Q LKRLVF SDMP + A+ GD F+Q
Sbjct: 13 GRSECLRAFIVALNQTCNGQEKRWYASTLELQLVSLEFCGACRRVPTLHVRVDRQTPRSLWSPCKSHATTKKRSREACVSNRVPAVQASGLTWALDMEVLLQTSAVELRSRSKYRRVSGNSSTASLGSMFWLQMMLKRLVFDSDMPASTASWPASLPQLLFGDRFDQ 179
BLAST of mRNA_Ecto-sp13_S_contig10565.525.1 vs. uniprot
Match: D7FTK8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTK8_ECTSI) HSP 1 Score: 150 bits (378), Expect = 1.170e-38 Identity = 82/145 (56.55%), Postives = 95/145 (65.52%), Query Frame = 1
Query: 1 GNSKCLDAFTVALNQACDGHKKRWYVSTMELQLVSLEFCGACRSVQTLDVRVVAHTSPSLWPARQSHTTPGRHGPEVSISSRVPAVQAFGLTWALQMEFLVETSAIELW-AESGDLRLTWSAAASQGSVIWPQQLKRLVFASDMP 432
G LD VALNQACDG +KRWYVST+ELQLVSLE CGACRS Q L V V T P+LW +R S TTP + PEV S+RVPAVQA TWAL M+ L + +A E L+ S AAS SV+WP+ LKRLVF+ MP
Sbjct: 85 GGGSSLDTLIVALNQACDGQEKRWYVSTLELQLVSLELCGACRSAQLLHVFVREDTPPTLWSSRTSRTTPSQRSPEVCTSNRVPAVQALCWTWALPMDRLPQRAAAEPQPVTERRLQDGHSFAASVESVVWPESLKRLVFSRRMP 229
BLAST of mRNA_Ecto-sp13_S_contig10565.525.1 vs. uniprot
Match: A0A6H5K8K9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8K9_9PHAE) HSP 1 Score: 152 bits (385), Expect = 7.470e-37 Identity = 88/168 (52.38%), Postives = 104/168 (61.90%), Query Frame = 1
Query: 1 GNSKCLDAFTVALNQACDGHKKRWYVSTMELQLVSLEFCGACRSVQTLDVRVVAHTSPSLWPARQSHTTPGRHGPEVSISSRVPAVQAFGLTWALQMEFLVETSAIELWAESGDLRLTW-SAAASQGSVIWPQQLKRLVFASDMPVNVATXXXXXXXXXXGDDFNQSI 501
G S+CLDAF VAL QA DG KRWYVST+ELQLVSLEFCGACRS + DV++ T SLW R+SH T + E I SRVPAVQA G WAL ME L+ SA EL S + + T S+A S G + W Q+L RL+F S+ VN + GD FNQ I
Sbjct: 25 GRSECLDAFIVALKQAGDGRAKRWYVSTLELQLVSLEFCGACRSALSFDVQIHRQTPHSLWSPRKSHGTLKKRSREACIPSRVPAVQANGWMWALPMEILLPRSATELHQVSENRQPTGPSSATSPGRMGWFQKLTRLMFYSERSVNSVSWPACLQELSFGDFFNQPI 192
BLAST of mRNA_Ecto-sp13_S_contig10565.525.1 vs. uniprot
Match: D7G7F9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7F9_ECTSI) HSP 1 Score: 135 bits (339), Expect = 4.890e-34 Identity = 71/146 (48.63%), Postives = 89/146 (60.96%), Query Frame = 1
Query: 1 GNSKCLDAFTVALNQACDGHKKRWYVSTMELQLVSLEFCGACRSVQTLDVRVVAHTSPSLWPARQSHTTPGRHGPEVSISSRVPAVQAFGLTWALQMEFLVETSAIELWAESGDLRLTWS-AAASQGSVIWPQQLKRLVFASDMPV 435
G ++ DAF +AL+QAC+G +KRWY ST ELQL SL+ C ACRS TL VRV T SLW P +V + SRVP V+A LTWA ME LV+ +AIELW+ S L + AAS GSV+WP L +LV +D +
Sbjct: 5 GYTRSFDAFAIALSQACEGGEKRWYTSTTELQLGSLDICRACRSTPTLHVRVTGGTPTSLWSPPTVQALPNTQSSKVRVVSRVPVVRALRLTWAFSMETLVQRAAIELWSRSERLEMVGPLCAASLGSVVWPLGLTQLVLDTDFHI 150
BLAST of mRNA_Ecto-sp13_S_contig10565.525.1 vs. uniprot
Match: A0A6H5LIJ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LIJ3_9PHAE) HSP 1 Score: 138 bits (347), Expect = 1.650e-31 Identity = 71/149 (47.65%), Postives = 93/149 (62.42%), Query Frame = 1
Query: 7 SKCLDAFTVALNQACDGHKKRWYVSTMELQLVSLEFCGACRSVQTLDVRVVAHTSPSLWPARQSHTTPGRHGPEVSISSRVPAVQAFGLTWALQMEFLVETSAIELWAESGDLRLTWSAAASQ--GSVIWPQQLKRLVFASDMPVNVAT 447
++CLDAF +AL+QAC+G +KRWY ST+ELQL SL+ C ACR+ L V V T SLW +R + T P + ISSRVP V+A LTWAL ME L+ +AIELW S L L S+ S V+WP+ L +LV +D + + T
Sbjct: 9 TRCLDAFVIALSQACEGGEKRWYASTLELQLTSLDLCRACRTTSILHVHVDDQTPRSLWSSRTAQTRPNTRSWNLHISSRVPVVRALRLTWALSMEALLRKAAIELWTWSERLELLGSSCVSSLGSEVVWPRGLTQLVLYTDSDIAMGT 157
BLAST of mRNA_Ecto-sp13_S_contig10565.525.1 vs. uniprot
Match: A0A6H5L1V9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1V9_9PHAE) HSP 1 Score: 128 bits (321), Expect = 8.200e-29 Identity = 70/136 (51.47%), Postives = 88/136 (64.71%), Query Frame = 1
Query: 10 KCLDAFTVALNQACDGHKKRWYVSTMELQLVSLEFCGACRSVQTLDVRVVAHTSPSLWPARQSHTTPGRHGPEVSISSRVPAVQAFGLTWALQMEFLVETSAIELWAESGDLRLTWS-AAASQGSVIWPQQLKRLV 414
+CLDAF VAL+Q +G +KRWY ST++LQL SLEFCGACRS L V V A T P+LW Q++ T G S+RVPAVQA GLTWA E + +++ ELW L+L S A+ SV+WPQ L+RLV
Sbjct: 8 RCLDAFVVALSQCYEGGEKRWYTSTLQLQLASLEFCGACRSTPMLHVYVDAETPPTLWSLGQANPTAG-------TSTRVPAVQAVGLTWARPTESPLGSASSELWTRLESLQLQVSLCTANLDSVVWPQGLQRLV 136
BLAST of mRNA_Ecto-sp13_S_contig10565.525.1 vs. uniprot
Match: A0A6H5K2L2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2L2_9PHAE) HSP 1 Score: 114 bits (284), Expect = 1.010e-24 Identity = 72/166 (43.37%), Postives = 93/166 (56.02%), Query Frame = 1
Query: 1 GNSKCLDAFTVALNQACDGHKKRWYVSTMELQLVSLEFCGACRSVQTLDVRVVAHTSPSLWPARQSHTTPGRHGPEVSISSRVPAVQAFGLTWALQMEFLVETSAIELWAESGDLRLTW-SAAASQGSVIWPQQLKRLVFASDMPVNVATXXXXXXXXXXGDDFNQ 495
G +C+DAF VALN+ CDG ++RWY ST+ELQ VSLEFC ACR V P S +T GR VS SR P V+A+ LTWAL M+ L+++ A+EL S R S+AA+ S++W Q+LKRLV D PV A+ G FN+
Sbjct: 15 GRGECVDAFIVALNRTCDGGEQRWYASTLELQPVSLEFCVACRRV----------------PTSHSTSTVGRL---VSGVSRAPVVRAYSLTWALSMDVLLQSCAMELQRGSKYRRSGGHSSAANLASMLWLQRLKRLVLELDTPVITASWPASLQQLSFGYKFNK 161
BLAST of mRNA_Ecto-sp13_S_contig10565.525.1 vs. uniprot
Match: A0A6H5L3M5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3M5_9PHAE) HSP 1 Score: 117 bits (292), Expect = 1.570e-24 Identity = 71/170 (41.76%), Postives = 91/170 (53.53%), Query Frame = 1
Query: 13 CLDAFTVALN-QACDGHKKRWYVSTMELQLVSLEFCGACRSVQTLDVRVVAHTSPSLWPARQS--HTTPGRHGPEVSISSRVPAVQAFGLTWALQMEFLVETSAIELWAESGDLRLTWSAAASQGSVIWPQQLKRLVFASDMPVNVATXXXXXXXXXXGDDFNQSIAEVV 513
CLDAF LN Q+C KKRWY S ELQLVSL+FCG CRS L VRV + PSLW +S + P +RVPAV+A+G TW++ ++ L++ + WA++ R A SV+WPQ LK+L F D V A+ G FNQ I VV
Sbjct: 103 CLDAFVAVLNHQSCVEGKKRWYTSIRELQLVSLKFCGVCRSTSILRVRVEHNAPPSLWSPTKSFSYALP-------DAWNRVPAVRAYGWTWSIPVDTLLKVCDLRYWAKAELSRRGSFPEAKLASVVWPQGLKQLEFDLDTAVEKASWPASLQSLTFGCSFNQPILGVV 265
BLAST of mRNA_Ecto-sp13_S_contig10565.525.1 vs. uniprot
Match: A0A6H5KXX4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXX4_9PHAE) HSP 1 Score: 112 bits (281), Expect = 4.280e-23 Identity = 72/167 (43.11%), Postives = 90/167 (53.89%), Query Frame = 1
Query: 1 GNSKCLDAFTVALNQACDGHKKRWYVSTMELQLVSLEFCGACRSVQTLDVRVVAHTSPSLW-----PARQSHTTPGR------------------------HGPEVSISSRVPAVQAFGLTWALQMEFLVETSAIELWAESGDLRLTWSAAASQ-GSVIWPQQLKRL 411
G S+ DA +A++QA +G KRWY ST+EL+L SLE C ACR V T+ VRV A+T PSLW P R +HT + + ISSRVP QA GLTWAL E L++ A+ELW + L+L S + S SV WPQ LKRL
Sbjct: 5 GASRGFDALIIAISQAYEGRGKRWYTSTLELRLASLETCRACRRVPTIHVRVDANTPPSLWSPHAMPTR-AHTRSSKTRAXXXXXXXXXXXXXXXXXXXXXXXXKARISSRVPVGQALGLTWALPTEILLQGVAVELWTKLEFLQLRESLSPSDLVSVAWPQNLKRL 170 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10565.525.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 24
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10565.525.1 >prot_Ecto-sp13_S_contig10565.525.1 ID=prot_Ecto-sp13_S_contig10565.525.1|Name=mRNA_Ecto-sp13_S_contig10565.525.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=298bp MELQLVSLEFCGACRSVQTLDVRVVAHTSPSLWPARQSHTTPGRHGPEVSback to top mRNA from alignment at Ecto-sp13_S_contig10565:3622..5064+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10565.525.1 ID=mRNA_Ecto-sp13_S_contig10565.525.1|Name=mRNA_Ecto-sp13_S_contig10565.525.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1443bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10565:3622..5064+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10565:3622..5064+ >mRNA_Ecto-sp13_S_contig10565.525.1 ID=mRNA_Ecto-sp13_S_contig10565.525.1|Name=mRNA_Ecto-sp13_S_contig10565.525.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=894bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10565:3622..5064+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |