mRNA_Ecto-sp13_S_contig10563.524.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10563.524.1
Unique NamemRNA_Ecto-sp13_S_contig10563.524.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10563.524.1 vs. uniprot
Match: A0A6H5L673_9PHAE (Tyrosine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L673_9PHAE)

HSP 1 Score: 528 bits (1359), Expect = 6.240e-186
Identity = 256/261 (98.08%), Postives = 260/261 (99.62%), Query Frame = 1 
Query:    1 KIGDPSGKDEARQLLDDAAIQRNIDGLARVFSKFLTFGDGPTDAKLVNNNEWLNQLSYLDFLREYGPHFTINRMMTYDSVRLRLEREQPLTFLEFNYMLLQAYDFTELYRRYGCILQMGGSDQWGNMVNGVDLGRRVEKAELFALTAPLITTSEGKKMGKSAAGAVWLNAEKLPEYDYWQFWRNTDDADVIRFLKLFTELSMDEIHKLEQLTGAGINEAKIVLADETTKLLHGEACLKEIHQTVKQVFAGGVGGSNAALPR 783
            KIGDPSGKDEARQLLDDAAIQRNIDGLA VFSKFLTFGDGPTDAKLVNNNEWLNQLSYLDFLREYGPHFTINRMMTYDSVRLRLEREQPLTFLEFNYMLLQAYDFTELYRRYGC+LQMGGSDQWGNMVNGVDLGRRVEKAELFALTAPLITTSEGKKMGKSAAGAVWLNA+KLPEYDYWQFWRNTDDADVIRFLKLFTELSMDE+HKLEQLTGAGIN+AKIVLADETTKLLHGEACLKEIHQTVKQVFAGGVGGSNAALPR
Sbjct:  151 KIGDPSGKDEARQLLDDAAIQRNIDGLASVFSKFLTFGDGPTDAKLVNNNEWLNQLSYLDFLREYGPHFTINRMMTYDSVRLRLEREQPLTFLEFNYMLLQAYDFTELYRRYGCVLQMGGSDQWGNMVNGVDLGRRVEKAELFALTAPLITTSEGKKMGKSAAGAVWLNADKLPEYDYWQFWRNTDDADVIRFLKLFTELSMDEVHKLEQLTGAGINKAKIVLADETTKLLHGEACLKEIHQTVKQVFAGGVGGSNAALPR 411
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10563.524.1 vs. uniprot
Match: A0A835Z418_9STRA (Tyrosine--tRNA ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z418_9STRA)

HSP 1 Score: 419 bits (1077), Expect = 6.740e-143
Identity = 199/262 (75.95%), Postives = 231/262 (88.17%), Query Frame = 1 
Query:    1 KIGDPSGKDEARQLLDDAAIQRNIDGLARVFSKFLTFGDGPTDAKLVNNNEWLNQLSYLDFLREYGPHFTINRMMTYDSVRLRLEREQPLTFLEFNYMLLQAYDFTELYRRYGCILQMGGSDQWGNMVNGVDLGRRVEKAELFALTAPLITTSEGKKMGKSAAGAVWLNAEKLPEYDYWQFWRNTDDADVIRFLKLFTELSMDEIHKLEQLTGAGINEAKIVLADETTKLLHGEACLKEIHQTVKQVF-AGGVGGSNAALPR 783
            K+GDPSG+DE+RQLLDDAAIQRN DG+  VF+KFLTFG+G +DA LV+N+EWL+ L Y+ FLREYGP+FTINRM+++DSVRLRLEREQPLTFLEFNYMLLQAYDF EL++RYGC LQMGGSDQWGNMVNGV+LGRR   AEL+ALTAPLITTS+G+KMGKSAAGAVWLNA++LP YDYWQFWRNTDDADV RFLKLFTEL ++ I +LE+L G  IN AKIVLADE T++LHGE CL+ I  T KQ+F AG  GGSNA+LPR
Sbjct:  166 KVGDPSGRDESRQLLDDAAIQRNKDGITSVFNKFLTFGEGASDALLVDNDEWLSSLGYIQFLREYGPYFTINRMLSFDSVRLRLEREQPLTFLEFNYMLLQAYDFVELHKRYGCSLQMGGSDQWGNMVNGVELGRRTAGAELYALTAPLITTSDGRKMGKSAAGAVWLNADRLPPYDYWQFWRNTDDADVARFLKLFTELPLERIAELEKLEGKDINAAKIVLADEATRMLHGEHCLESIRATAKQLFEAGAAGGSNASLPR 427
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10563.524.1 vs. uniprot
Match: A0A7S2XYP8_9STRA (Tyrosine--tRNA ligase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYP8_9STRA)

HSP 1 Score: 382 bits (982), Expect = 1.400e-128
Identity = 178/259 (68.73%), Postives = 221/259 (85.33%), Query Frame = 1 
Query:    1 KIGDPSGKDEARQLLDDAAIQRNIDGLARVFSKFLTFGDGPTDAKLVNNNEWLNQLSYLDFLREYGPHFTINRMMTYDSVRLRLEREQPLTFLEFNYMLLQAYDFTELYRRYGCILQMGGSDQWGNMVNGVDLGRRVEKAELFALTAPLITTSEGKKMGKSAAGAVWLNAEKLPEYDYWQFWRNTDDADVIRFLKLFTELSMDEIHKLEQLTGAGINEAKIVLADETTKLLHGEACLKEIHQTVKQVFAGGVGGSNAAL 777
            K+GDPSGKDE+R++L + +IQ NIDG+A+VF +FLTFG+ PT+A LVNN+EWL+ L YL FLR+YGP+FTINRMM Y+SV++RL+REQPLTFLEFNYM+LQAYDF EL RR+ CILQ+GGSDQWGN+VNG DL R+ ++  ++ LTAPLITTS+GKKMGK+A GA+WLN EKL EY+YWQFWRNT+DADV RFLKLFTELS++EI KL  + GA IN+AK+VLADE T++LHG  CL  IH TV+ +FAG  G SN+AL
Sbjct:  162 KVGDPSGKDESRKMLTEESIQANIDGIAKVFERFLTFGEQPTEALLVNNDEWLSPLQYLQFLRDYGPYFTINRMMNYESVKVRLDREQPLTFLEFNYMILQAYDFLELRRRHDCILQLGGSDQWGNIVNGCDLNRKADQHTVYGLTAPLITTSDGKKMGKTANGAMWLNKEKLSEYEYWQFWRNTNDADVARFLKLFTELSLEEIDKLTNVEGAAINQAKVVLADEATRMLHGADCLPAIHDTVQSMFAGK-GKSNSAL 419
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10563.524.1 vs. uniprot
Match: A0A7S3XVK9_HETAK (Tyrosine--tRNA ligase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XVK9_HETAK)

HSP 1 Score: 380 bits (976), Expect = 1.370e-127
Identity = 174/242 (71.90%), Postives = 211/242 (87.19%), Query Frame = 1 
Query:    1 KIGDPSGKDEARQLLDDAAIQRNIDGLARVFSKFLTFGDGPTDAKLVNNNEWLNQLSYLDFLREYGPHFTINRMMTYDSVRLRLEREQPLTFLEFNYMLLQAYDFTELYRRYGCILQMGGSDQWGNMVNGVDLGRRVEKAELFALTAPLITTSEGKKMGKSAAGAVWLNAEKLPEYDYWQFWRNTDDADVIRFLKLFTELSMDEIHKLEQLTGAGINEAKIVLADETTKLLHGEACLKEIHQ 726
            K+GDPSGKDEAR+LL +A IQRNIDG++ VF KFL FGDGPTDA LVNN+EWL++L+YL FLR+YGPHFTINRM+ ++SVRLRLEREQPL+FLEFNYM+LQ YDF EL RRY   LQ+GGSDQWGN++NG+DL R++++ ++F LTAPLITTS+GKKMGKSAAGAVWLNA+KLP YDYWQFWRNT D DV+RF+KLFTEL +++I     LTGA IN+AK+VLADE T++LHGEACL  I +
Sbjct:  154 KVGDPSGKDEARKLLTEADIQRNIDGISGVFRKFLAFGDGPTDALLVNNDEWLSELNYLQFLRDYGPHFTINRMLNFESVRLRLEREQPLSFLEFNYMILQGYDFLELSRRYDVALQLGGSDQWGNIINGIDLARKLDQKQVFGLTAPLITTSDGKKMGKSAAGAVWLNADKLPAYDYWQFWRNTADEDVVRFMKLFTELPLEQIEGYAALTGAAINDAKVVLADEATRMLHGEACLGPIKE 395
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10563.524.1 vs. uniprot
Match: A0A7S4B398_CHRCT (Tyrosine--tRNA ligase n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4B398_CHRCT)

HSP 1 Score: 381 bits (978), Expect = 1.780e-127
Identity = 177/261 (67.82%), Postives = 217/261 (83.14%), Query Frame = 1 
Query:    1 KIGDPSGKDEARQLLDDAAIQRNIDGLARVFSKFLTFGDGPTDAKLVNNNEWLNQLSYLDFLREYGPHFTINRMMTYDSVRLRLEREQPLTFLEFNYMLLQAYDFTELYRRYGCILQMGGSDQWGNMVNGVDLGRRVEKAELFALTAPLITTSEGKKMGKSAAGAVWLNAEKLPEYDYWQFWRNTDDADVIRFLKLFTELSMDEIHKLEQLTGAGINEAKIVLADETTKLLHGEACLKEIHQTVKQVFAGGVGGSNAALPR 783
            K+GDPSGKD +RQLLD+AAIQ NIDG+++VFSKFLTFGDGPTDA +VNN+EWL+ L YLDFLREYG HFTINRM+ ++SV+ RLERE PL+FLEFNYM+LQAYDF EL RR+  +LQ GGSDQWGN++NGV+LGRRV+   LF LTAPL+TTS+GKKMGK+A+GAVWLNA+ LP ++YWQ+WRN  DADV RFL++FTEL   EI +LE L GA INEAK+VLA+E T++LHGE C+++I  T   +F GG      ALPR
Sbjct:  198 KVGDPSGKDASRQLLDEAAIQSNIDGISQVFSKFLTFGDGPTDAIMVNNDEWLSPLRYLDFLREYGRHFTINRMLNFESVKQRLERESPLSFLEFNYMILQAYDFLELNRRHSAVLQFGGSDQWGNIINGVELGRRVDGVSLFGLTAPLLTTSDGKKMGKTASGAVWLNADLLPPFEYWQYWRNVADADVGRFLRIFTELPRAEIERLEALPGAEINEAKVVLANEVTRMLHGEECIEQIQATAAALFGGGNTADTDALPR 458
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10563.524.1 vs. uniprot
Match: L1JX61_GUITC (Tyrosine--tRNA ligase n=3 Tax=Guillardia theta TaxID=55529 RepID=L1JX61_GUITC)

HSP 1 Score: 379 bits (972), Expect = 3.910e-127
Identity = 175/253 (69.17%), Postives = 210/253 (83.00%), Query Frame = 1 
Query:    1 KIGDPSGKDEARQLLDDAAIQRNIDGLARVFSKFLTFGDGPTDAKLVNNNEWLNQLSYLDFLREYGPHFTINRMMTYDSVRLRLEREQPLTFLEFNYMLLQAYDFTELYRRYGCILQMGGSDQWGNMVNGVDLGRRVEKAELFALTAPLITTSEGKKMGKSAAGAVWLNAEKLPEYDYWQFWRNTDDADVIRFLKLFTELSMDEIHKLEQLTGAGINEAKIVLADETTKLLHGEACLKEIHQTVKQVFAGGVG 759
            K+GDP+GKD++R++L D  IQ N++G+  VF KFL FGDGPTDA LVNN+EWL+ + YLDFLREYGP FTINRM+ ++SV+LRLERE PLTFLEFNYM+LQAYDF EL RRYGC LQ+GGSDQWGNMVNGV+L RR    ++FA+TAPLITTS+GKKMGKS  GAVWLNA+ LP YDYWQFWRNT DADV+RFLKLFTEL M++I +L +L GA IN+AK +LADE T++LHGE  L  IH+T   +FAG  G
Sbjct:  158 KVGDPTGKDQSRKMLSDQDIQDNVNGIKTVFEKFLKFGDGPTDALLVNNDEWLSSIRYLDFLREYGPLFTINRMLNFESVKLRLERESPLTFLEFNYMILQAYDFLELNRRYGCSLQLGGSDQWGNMVNGVELTRRANSKQVFAMTAPLITTSDGKKMGKSEGGAVWLNADMLPPYDYWQFWRNTQDADVVRFLKLFTELPMEKIEELSKLEGAAINDAKKILADECTRMLHGEEVLPSIHETASALFAGKSG 410
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10563.524.1 vs. uniprot
Match: A0A1Z5JPX4_FISSO (Tyrosine--tRNA ligase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JPX4_FISSO)

HSP 1 Score: 378 bits (970), Expect = 7.140e-127
Identity = 179/262 (68.32%), Postives = 221/262 (84.35%), Query Frame = 1 
Query:    1 KIGDPSGKDEARQLLDDAAIQRNIDGLARVFSKFLTFGD-GPTDAKLVNNNEWLNQLSYLDFLREYGPHFTINRMMTYDSVRLRLEREQPLTFLEFNYMLLQAYDFTELYRRYGCILQMGGSDQWGNMVNGVDLGRRVEKAELFALTAPLITTSEGKKMGKSAAGAVWLNAEKLPEYDYWQFWRNTDDADVIRFLKLFTELSMDEIHKLEQLTGAGINEAKIVLADETTKLLHGEACLKEIHQTVKQVFAGGVGGSNAALPR 783
            K+GDP+GKDE+R +L + AIQ+NI+G++ VF KFL FGD  PTDA  VNN++WL++L YL FLR+YG HFTINRM++++SV+ RL RE PL+FLEFNYM+LQAYDF ELYRRY  ILQ+GGSDQWGNMV+G +LGRR+E A+LFALTAPL+TTS+GKKMGK+A GAVWLN+ KL EYDYWQFWRNT D DV++FLKLFTEL +++I +LE+L GA IN+AKIVLADE T LLHG+ CL  IH+TVK +FAG  G S  +LPR
Sbjct:  152 KVGDPTGKDESRAMLTEEAIQKNIEGISSVFQKFLVFGDTNPTDAVTVNNDDWLSELKYLQFLRDYGTHFTINRMLSFESVKQRLAREAPLSFLEFNYMILQAYDFLELYRRYNTILQLGGSDQWGNMVSGTELGRRIEGAQLFALTAPLMTTSDGKKMGKTANGAVWLNSSKLSEYDYWQFWRNTADDDVVKFLKLFTELPLEQIAELEKLQGADINKAKIVLADEATALLHGKECLPVIHETVKTMFAGS-GESTESLPR 412
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10563.524.1 vs. uniprot
Match: A0A8J6C8V9_DIALT (Tyrosine--tRNA ligase n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6C8V9_DIALT)

HSP 1 Score: 376 bits (965), Expect = 8.000e-127
Identity = 176/253 (69.57%), Postives = 209/253 (82.61%), Query Frame = 1 
Query:    1 KIGDPSGKDEARQLLDDAAIQRNIDGLARVFSKFLTFGDGPTDAKLVNNNEWLNQLSYLDFLREYGPHFTINRMMTYDSVRLRLEREQPLTFLEFNYMLLQAYDFTELYRRYGCILQMGGSDQWGNMVNGVDLGRRVEKAELFALTAPLITTSEGKKMGKSAAGAVWLNAEKLPEYDYWQFWRNTDDADVIRFLKLFTELSMDEIHKLEQLTGAGINEAKIVLADETTKLLHGEACLKEIHQTVKQVFAGGVG 759
            KIGDPSG+D  RQ+L D  I  NI G+++VF++FLTFGDGPTDA LVNN+EWL QL  L FLR+YG +FTINRM+T++SV+ RL REQPLTFLEFNYM+ QAYDF EL RRYGC LQMGGSDQWGN+++GV+LGRR + A LFA+TAPLITT++GKKMGKS  GAVWLN + LP YDYWQFWRNTDDADV+RFL+LFTELS + I +L QL GA INEAK+VLADE T++LHG+ CL  I QT  Q+F  G G
Sbjct:   94 KIGDPSGRDTTRQMLTDEQIDANIAGISKVFARFLTFGDGPTDAVLVNNDEWLGQLRLLPFLRDYGRYFTINRMLTFESVKQRLGREQPLTFLEFNYMIFQAYDFLELSRRYGCRLQMGGSDQWGNIISGVELGRRADDASLFAVTAPLITTADGKKMGKSLGGAVWLNEDLLPPYDYWQFWRNTDDADVVRFLRLFTELSDERIAELAQLEGAAINEAKVVLADEATRMLHGDGCLAAIRQTAAQLFTNGGG 346
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10563.524.1 vs. uniprot
Match: W7T7T0_9STRA (Tyrosine--tRNA ligase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T7T0_9STRA)

HSP 1 Score: 379 bits (973), Expect = 1.150e-126
Identity = 178/261 (68.20%), Postives = 215/261 (82.38%), Query Frame = 1 
Query:    1 KIGDPSGKDEARQLLDDAAIQRNIDGLARVFSKFLTFGDGPTDAKLVNNNEWLNQLSYLDFLREYGPHFTINRMMTYDSVRLRLEREQPLTFLEFNYMLLQAYDFTELYRRYGCILQMGGSDQWGNMVNGVDLGRRVEKAELFALTAPLITTSEGKKMGKSAAGAVWLNAEKLPEYDYWQFWRNTDDADVIRFLKLFTELSMDEIHKLEQLTGAGINEAKIVLADETTKLLHGEACLKEIHQTVKQVFAGGVGGSNAALPR 783
            K+GDPSGKDEAR+L+    IQ NI  ++ VF +FL FGDG TDA LVNN+EWL+ L YLDFLR+YG HFTINRM+ ++SV++RL+RE PL+FLEFNYM+LQAYDF EL RRY   LQ+GGSDQWGN++NGV+L R+V+   LF LTAPL+TTS+GKKMGK+A+GAVWL  E L EYDYWQFWRNT+DADV RFLKLFTE+ +++I +L +L GAGINEAK++LADE TKLLHGE CLKEIH TV  +FAGG     AALPR
Sbjct:  201 KVGDPSGKDEARKLMTYETIQGNIASISEVFRRFLAFGDGATDALLVNNDEWLSPLRYLDFLRDYGQHFTINRMLNFESVKMRLDRESPLSFLEFNYMILQAYDFLELSRRYQARLQLGGSDQWGNIINGVELARKVDGRHLFGLTAPLMTTSDGKKMGKTASGAVWLKKELLSEYDYWQFWRNTNDADVTRFLKLFTEVPLEKIEELARLEGAGINEAKVILADEATKLLHGEECLKEIHATVANLFAGGSTEDTAALPR 461
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10563.524.1 vs. uniprot
Match: B7FZQ5_PHATC (Tyrosine--tRNA ligase n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FZQ5_PHATC)

HSP 1 Score: 377 bits (967), Expect = 1.790e-126
Identity = 178/262 (67.94%), Postives = 221/262 (84.35%), Query Frame = 1 
Query:    1 KIGDPSGKDEARQLLDDAAIQRNIDGLARVFSKFLTFGDG-PTDAKLVNNNEWLNQLSYLDFLREYGPHFTINRMMTYDSVRLRLEREQPLTFLEFNYMLLQAYDFTELYRRYGCILQMGGSDQWGNMVNGVDLGRRVEKAELFALTAPLITTSEGKKMGKSAAGAVWLNAEKLPEYDYWQFWRNTDDADVIRFLKLFTELSMDEIHKLEQLTGAGINEAKIVLADETTKLLHGEACLKEIHQTVKQVFAGGVGGSNAALPR 783
            K+GDP+GKDE+R LL D  IQ+N DG+++VF +FLTFGD  PTDA +VNN+EWL+++ YLDFLR YG HFTINRM++++SV+ RL RE P +FLEFNYM+LQAYDF ELYRR+  ILQ+GGSDQWGNM++G +LGR++E A+LFALTAPLITTS+GKKMGK+A GAVWLNA +L  YDYWQFWRNTDDADVIRFLKLFTEL +D++ +LE+L GA IN+AKIVLADE T LLHG   L+ IH+T++ +FAGG G    +LPR
Sbjct:  147 KVGDPTGKDESRVLLTDEIIQQNTDGISKVFQQFLTFGDEKPTDAIMVNNDEWLSEIKYLDFLRTYGTHFTINRMLSFESVKQRLTREAPFSFLEFNYMILQAYDFLELYRRHKTILQLGGSDQWGNMISGTELGRKLESAQLFALTAPLITTSDGKKMGKTANGAVWLNAARLSSYDYWQFWRNTDDADVIRFLKLFTELPLDKVAELEKLQGAEINQAKIVLADEATALLHGSDSLEAIHKTIETMFAGG-GSDTESLPR 407
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10563.524.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L673_9PHAE6.240e-18698.08Tyrosine--tRNA ligase n=2 Tax=Ectocarpus TaxID=287... [more]
A0A835Z418_9STRA6.740e-14375.95Tyrosine--tRNA ligase n=1 Tax=Tribonema minus TaxI... [more]
A0A7S2XYP8_9STRA1.400e-12868.73Tyrosine--tRNA ligase n=1 Tax=Fibrocapsa japonica ... [more]
A0A7S3XVK9_HETAK1.370e-12771.90Tyrosine--tRNA ligase n=1 Tax=Heterosigma akashiwo... [more]
A0A7S4B398_CHRCT1.780e-12767.82Tyrosine--tRNA ligase n=1 Tax=Chrysotila carterae ... [more]
L1JX61_GUITC3.910e-12769.17Tyrosine--tRNA ligase n=3 Tax=Guillardia theta Tax... [more]
A0A1Z5JPX4_FISSO7.140e-12768.32Tyrosine--tRNA ligase n=2 Tax=Fistulifera solaris ... [more]
A0A8J6C8V9_DIALT8.000e-12769.57Tyrosine--tRNA ligase n=1 Tax=Diacronema lutheri T... [more]
W7T7T0_9STRA1.150e-12668.20Tyrosine--tRNA ligase n=1 Tax=Nannochloropsis gadi... [more]
B7FZQ5_PHATC1.790e-12667.94Tyrosine--tRNA ligase n=2 Tax=Phaeodactylum tricor... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10563contigEcto-sp13_S_contig10563:3..2610 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score523.5
Seed ortholog evalue5.8e-146
Seed eggNOG ortholog2880.D8LPN5
Preferred nameMSY1
Model size787
KEGG rclassRC00055,RC00523
KEGG koko:K01866
KEGG ReactionR02918
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryother localisation
GOsGO:0000049,GO:0000166,GO:0000372,GO:0000375,GO:0000376,GO:0000959,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004812,GO:0004831,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005829,GO:0006082,GO:0006139,GO:0006396,GO:0006399,GO:0006412,GO:0006418,GO:0006437,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008380,GO:0009058,GO:0009059,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010628,GO:0016070,GO:0016874,GO:0016875,GO:0017076,GO:0019219,GO:0019222,GO:0019538,GO:0019752,GO:0030554,GO:0031323,GO:0031325,GO:0031974,GO:0032543,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033120,GO:0034337,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0036094,GO:0042802,GO:0042803,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043484,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045935,GO:0046483,GO:0046983,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0061635,GO:0065007,GO:0065008,GO:0070013,GO:0070127,GO:0070184,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:0097367,GO:0140053,GO:0140098,GO:0140101,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576
Exons5
EggNOG free text desc.tyrosyl-tRNA aminoacylation
EggNOG OGsCOG0162@1,KOG2623@2759
Ec32 ortholog descriptionTyrosyl-tRNA synthetase
Ec32 orthologEc-18_001870.1
EC6.1.1.1
Cds size786
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462538.5431309-CDS-Ecto-sp13_S_contig10563:2..651681462538.5431309-CDS-Ecto-sp13_S_contig10563:2..65Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10563 3..65 +
1681462538.554654-CDS-Ecto-sp13_S_contig10563:655..9301681462538.554654-CDS-Ecto-sp13_S_contig10563:655..930Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10563 656..930 +
1681462538.56561-CDS-Ecto-sp13_S_contig10563:1744..19461681462538.56561-CDS-Ecto-sp13_S_contig10563:1744..1946Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10563 1745..1946 +
1681462538.5782473-CDS-Ecto-sp13_S_contig10563:2106..22261681462538.5782473-CDS-Ecto-sp13_S_contig10563:2106..2226Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10563 2107..2226 +
1681462538.5915816-CDS-Ecto-sp13_S_contig10563:2484..26101681462538.5915816-CDS-Ecto-sp13_S_contig10563:2484..2610Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10563 2485..2610 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10563.524.1prot_Ecto-sp13_S_contig10563.524.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10563 3..2610 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10563.524.1

>prot_Ecto-sp13_S_contig10563.524.1 ID=prot_Ecto-sp13_S_contig10563.524.1|Name=mRNA_Ecto-sp13_S_contig10563.524.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=262bp
KIGDPSGKDEARQLLDDAAIQRNIDGLARVFSKFLTFGDGPTDAKLVNNN
EWLNQLSYLDFLREYGPHFTINRMMTYDSVRLRLEREQPLTFLEFNYMLL
QAYDFTELYRRYGCILQMGGSDQWGNMVNGVDLGRRVEKAELFALTAPLI
TTSEGKKMGKSAAGAVWLNAEKLPEYDYWQFWRNTDDADVIRFLKLFTEL
SMDEIHKLEQLTGAGINEAKIVLADETTKLLHGEACLKEIHQTVKQVFAG
GVGGSNAALPR*
back to top

mRNA from alignment at Ecto-sp13_S_contig10563:3..2610+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10563.524.1 ID=mRNA_Ecto-sp13_S_contig10563.524.1|Name=mRNA_Ecto-sp13_S_contig10563.524.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2608bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10563:3..2610+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAAATCGGAGATCCGTCGGGAAAGGACGAAGCTCGACAGCTCCTCGATGA
TGCAGCAATCCAGGTAAGAAGGACTCACTGCACTGTGGGCCACATGCTGG
GCCCGAGTGCGCCTGAAAGTTCAACAAGAGACGGATAGGTATCCATCCAA
ACTCACCCACAATGAGAAGACCGTGTTGATCCCGGTAGCACTTGCTTTGC
TGTTGTCTTCGTGGTGTGTCTTCGTGGTGTGTACACGCGCACAAGGCACA
GCACGTTAAACGGCCGTTTTTTTGCGTGCGGCTCGGGTACGTGATTGTTC
TTGGAAACGCGGGTGCGTACAAGATATGTCTGAGTTTTGGGATCGACGAA
GTCGAAGCAACACGAGAGTCGTATGTAGGAGGAATCCAGACGCAGAAGAT
CATTCAGATGTGACTACGAACTATAACCGCGACCAGAGCGTCCACTTTAA
CTGTTGCGGTGCCCGCGAGGCAATCTGGTGTCGTGGTGCTTTGTGTGCGG
AGAGACCACGAGTTCGTATGCAGTGCTTCGAATGAATTATATCGTTTTTT
GTTCTGCGGTATTGTCACGCAAAGCCACTGCTGTTGGAAGTACCGCCCAA
TCACTCTGTGACCTGTTCCTCCTATGTGACAACGGCTGGCCCCTTGATTG
CAGCGGAATATCGACGGGCTCGCCAGGGTTTTTTCTAAGTTCCTGACGTT
CGGGGACGGCCCTACGGACGCCAAGCTCGTCAATAACAACGAGTGGTTGA
ACCAGTTATCGTACCTCGACTTTCTGCGAGAGTACGGCCCGCATTTCACG
ATCAACCGCATGATGACGTACGATAGTGTTCGCCTACGGTTGGAACGTGA
GCAGCCGCTGACCTTCTTGGAGTTCAACTATATGCTGCTGCAGGCGTACG
ACTTCACGGAACTCTACCGTCGCTACGGGTGAGGGGTATTCTCGCCAAAC
TGTAAAGTAGGTGCAGGTAGTACATCAGAGGGCGTGTACTATCCCTCTTG
ACCGAAACGTGAACAGAGAACAGGGAACTCTGAGTTCCCTGTTTCCTTTC
CCATTTCGTTGTGTCCTAACTACCACACAGCAGCATTCAGGCCTAGAACA
CGGAACATTTTAACGCGCGCGTGCGGCCCGCAAGCACTCGGAGGCAAAAA
GTACAATCGTTGGAGGGAGCAAGATGAGTGGTGAGGTACGGGAAGAGGAG
TGGTGTAAGTTCGATTTTGAAGGAAGCTGTTGACGAGCACACATAATGCA
TATGTGCTAGGTATCGGTTAGCGCAGGTGGTGCTCGTCGTGCAATCCGCA
CCCTCGAGAGTGCTCTGGAAGGCTTTCTTCCGGAGGTGCGGTCAACGGCA
GCTTGCCTTCCTCTGTGACACTCTATCTTGCTCAATACACAGGGTACACG
AGGATCCGCTGCCGTTTTTTTTGCATGCGAGACCCCTGATGATGGTAGCA
ATGCCTACATCGGTTGAACCGGTAGCGTACAGCACCTGTGCCACCGAAGA
GTCCGTGTTCCACGTTTCACATGGTCTGTTGGTAAACTTTGATGAACAAG
TTTGATGCGGCCTTTTGACCCAAAAGGCGGAGGCTGAGAAGCCACAATTG
GTTATCAGGAACGATATTTAGTGTGGGTGGCCAATCTGACAGTAATTCCG
ATATCCTTGTTCCCTGTTCCCTGTGTTGGGGAGGGGGTATGGTCTCGCGC
CTCTGCAGACATAACACTTTGACCCTGCGCTGGTTGTTTCAGATGCATCT
TGCAGATGGGCGGCTCGGACCAGTGGGGCAACATGGTCAACGGCGTGGAT
TTGGGGCGGCGAGTGGAAAAGGCAGAGTTGTTTGCTCTGACTGCTCCTCT
CATCACCACATCTGAGGGCAAGAAGATGGGAAAGTCAGCTGCTGGCGCCG
TATGGTTGAACGCAGAAAAACTTCCAGAGTACGACTACTGGCAGGTAAAC
ACGATCTGCAGGCACATCCGTGTGAAATTCAAGCTGATTGCAGACGCCAG
CAAAGCCGAGTATTGCGTCCATTTTCCGACACGATACGATGCTGTGAGTC
GTTGTCATAGAAACGCCGTCCCAACTAACTCAATCCGTCTGCCACGTGTG
ACAGTTCTGGCGTAACACGGATGACGCTGATGTCATTCGTTTTTTGAAGC
TGTTCACCGAGCTGTCCATGGATGAAATACACAAACTGGAGCAGCTTACG
GGGGCAGGGATCAACGAGGCCAAGGTTCGGAGCCAACATATCACGGAGCA
CATCAACGTAACAACACCTTGTATTGCGCCCAGTGTGCAGTCACCCATGC
GCTATTCTTTGCCCGTAATAGGCCACCTTGGATTTTTGGCACCAAACATA
GGCTTGGGGCCATGTTTACCGCAACACGGCTAGCTTACATTCTCGATGGA
GCGGGAGTATCTGACCAACAAACGCGAACTGAGTGTCTTGTGGTCAATGT
ATGTGCCGTTGTCATAAACCCCTTGCGAACAGATTGTACTCGCGGATGAA
ACAACCAAGTTGCTTCACGGGGAAGCGTGCTTGAAGGAGATCCACCAGAC
TGTCAAGCAAGTATTCGCTGGAGGGGTTGGGGGATCCAATGCAGCTCTTC
CAAGGTAA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10563:3..2610+

>mRNA_Ecto-sp13_S_contig10563.524.1 ID=mRNA_Ecto-sp13_S_contig10563.524.1|Name=mRNA_Ecto-sp13_S_contig10563.524.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=786bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10563:3..2610+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAAATCGGAGATCCGTCGGGAAAGGACGAAGCTCGACAGCTCCTCGATGA
TGCAGCAATCCAGCGGAATATCGACGGGCTCGCCAGGGTTTTTTCTAAGT
TCCTGACGTTCGGGGACGGCCCTACGGACGCCAAGCTCGTCAATAACAAC
GAGTGGTTGAACCAGTTATCGTACCTCGACTTTCTGCGAGAGTACGGCCC
GCATTTCACGATCAACCGCATGATGACGTACGATAGTGTTCGCCTACGGT
TGGAACGTGAGCAGCCGCTGACCTTCTTGGAGTTCAACTATATGCTGCTG
CAGGCGTACGACTTCACGGAACTCTACCGTCGCTACGGATGCATCTTGCA
GATGGGCGGCTCGGACCAGTGGGGCAACATGGTCAACGGCGTGGATTTGG
GGCGGCGAGTGGAAAAGGCAGAGTTGTTTGCTCTGACTGCTCCTCTCATC
ACCACATCTGAGGGCAAGAAGATGGGAAAGTCAGCTGCTGGCGCCGTATG
GTTGAACGCAGAAAAACTTCCAGAGTACGACTACTGGCAGTTCTGGCGTA
ACACGGATGACGCTGATGTCATTCGTTTTTTGAAGCTGTTCACCGAGCTG
TCCATGGATGAAATACACAAACTGGAGCAGCTTACGGGGGCAGGGATCAA
CGAGGCCAAGATTGTACTCGCGGATGAAACAACCAAGTTGCTTCACGGGG
AAGCGTGCTTGAAGGAGATCCACCAGACTGTCAAGCAAGTATTCGCTGGA
GGGGTTGGGGGATCCAATGCAGCTCTTCCAAGGTAA
back to top