mRNA_Ecto-sp13_S_contig10560.521.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10560.521.1
Unique NamemRNA_Ecto-sp13_S_contig10560.521.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10560.521.1 vs. uniprot
Match: D7G3V5_ECTSI (AAA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3V5_ECTSI)

HSP 1 Score: 597 bits (1539), Expect = 4.370e-212
Identity = 314/336 (93.45%), Postives = 320/336 (95.24%), Query Frame = 1 
Query:    1 SGADYMVASKVEEYQGLIRRKLGQRLEYCGGNVVVLFDELQKAAPGTLDALAEAMSEHPRVTFERGGQNVSVDSSRVVFLLVSDVGAEGVNAAVLRYRRRSDVVPGALQSAVKRSLDEQWERLRFGKMVDKVVPYLPMDPASNLLVVELKLKKLAETLHGGLYTTSGLRWHLVQPQYIQYSSYHVTLPNDGREEIIRHQLAAYGARDVEKVSMRRITGAIRNHVLNPTCAATDEGAEVTGSPAGEDRVGGGGRPGQGGXXXXXXXXXXXXXXRCWSEPFMVDIRYDASTEQVSFHRCEPDYADGLTELQREHPDIVEGPKCDLAWRGVLHEHGALA 1008
            +GADYMVA+KVEEYQ LIRRKLGQRLEYCGGNVVVLFDELQKAAPGTLDALAEAMSEHPRVTFERGGQNVSVDSSRVVFLLVSDVGAEGVNAAVLRYR+RSDVVPGALQSAVKRSLDEQWERLRFGKMVDKVVPYLPMDPASNLLVVELKLKKLAETL GGLYTTSGLRWHLVQPQYIQYSSYHVTLPNDGREEIIRHQLAAYGARDVEKVSMRR+TGAIRNHVLNPTCAATDEGAE TGSP G+ R           XXXXXXXXXXXXXXRCWSEPFMVDIRYDASTEQVSFHRCEPDYADGLTELQREHPD+VEGPKCDLAWRGVLHEHGALA
Sbjct:  149 NGADYMVAAKVEEYQSLIRRKLGQRLEYCGGNVVVLFDELQKAAPGTLDALAEAMSEHPRVTFERGGQNVSVDSSRVVFLLVSDVGAEGVNAAVLRYRKRSDVVPGALQSAVKRSLDEQWERLRFGKMVDKVVPYLPMDPASNLLVVELKLKKLAETLDGGLYTTSGLRWHLVQPQYIQYSSYHVTLPNDGREEIIRHQLAAYGARDVEKVSMRRLTGAIRNHVLNPTCAATDEGAEETGSPEGQGRGXXXXXXXXXXXXXXXXXXXXXXXXRCWSEPFMVDIRYDASTEQVSFHRCEPDYADGLTELQREHPDVVEGPKCDLAWRGVLHEHGALA 484
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BLAST of mRNA_Ecto-sp13_S_contig10560.521.1 vs. uniprot
Match: A0A7S4DD61_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DD61_HETAK)

HSP 1 Score: 166 bits (419), Expect = 5.680e-44
Identity = 93/218 (42.66%), Postives = 127/218 (58.26%), Query Frame = 1 
Query:   22 ASKVEEYQGLIRRKLGQRLEYCGGNVVVLFDELQKAAPGTLDALAEAMSEHPRVTFERGGQNVSVDSSRVVFLLVSDVGAEGVNAAVLRYRRRSDVVPGALQSAVKRSLDEQWERLRFGKMVDKVVPYLPMDPASNLLVVELKLKKLAETLHGGLY----TTSGLRWHLVQPQYIQYSSYHVTLPNDGREEIIRHQLAAYGARDVEKVS-MRRITGAI 660
            A  +  Y   I+ +L   L +CGGN VVLFDE+QK  PGTLD L EAM+EHP++TF   G+ V+VD S+V+FLLVSD+G E + +  L YR RS+V    L+   K +LD QW  LRFGK++D+VVPYLPM+      V+ LKL  L     G  +     T     HLV  ++I+Y  Y         E+ I  + A YGAR++E    ++   GA+
Sbjct:  148 AMPISRYHTEIKSRLVAHLRHCGGNAVVLFDEVQKVVPGTLDVLMEAMTEHPQLTFFSNGKAVTVDCSKVIFLLVSDIGWERMVSRQLLYRTRSEVPAEELRREAKSALDAQWAHLRFGKVIDEVVPYLPMEAPQLREVLRLKLANLHRQFQGQFWLRLCVTPETEEHLVSHRFIEYKKYKTAA---SAEKGIEKEFAEYGARNIENAGPLKAFKGAL 362
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BLAST of mRNA_Ecto-sp13_S_contig10560.521.1 vs. uniprot
Match: A0A7S2V512_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V512_9STRA)

HSP 1 Score: 162 bits (409), Expect = 9.680e-42
Identity = 93/216 (43.06%), Postives = 132/216 (61.11%), Query Frame = 1 
Query:    4 GADYMVA--SKVEEYQGLIRRKLGQRLEYCGGNVVVLFDELQKAAPGTLDALAEAMSEHPRVTFERGGQNVSVDSSRVVFLLVSDVGAEGVNAAVLRYRRRSDVVPGALQSAVKRSLDEQWERLRFGKMVDKVVPYLPMDPASNLLVVELKLKKLAETLHG----GLYTTSGLRWHLVQPQ--YIQYSSYHVTLPNDGREEIIRHQLAAYGARDVE 627
            G D+  A  + + +Y   I+ +L   L +C GN VVLFDE+QK  PGTLD + EAM+EHP +T+   G+ V++D S+VVF+LVSD+G E + +  L Y  RSD+    +++ VK +LDEQWERL+FGK+VD+V+PYLPM+      V++LKL  L +   G    GL  T     HLV PQ   + Y  Y      D    I+++  A YGAR++E
Sbjct:  258 GEDFSDAEGAPLAQYHTEIKSRLVNHLRHCAGNAVVLFDEVQKIIPGTLDVIMEAMTEHPTLTYFADGKTVAMDCSKVVFILVSDIGWEKMVSKQLTYHDRSDIPVDEMRAVVKGALDEQWERLKFGKVVDEVIPYLPMEKEQMADVLQLKLGYLDKEFQGDFWRGLCVTEAAAAHLVSPQARLVTYKEYKTRRSED--LGIVKY-FAEYGARNIE 470
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BLAST of mRNA_Ecto-sp13_S_contig10560.521.1 vs. uniprot
Match: A0A6G0W9D6_9STRA (AAA domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W9D6_9STRA)

HSP 1 Score: 152 bits (383), Expect = 9.270e-39
Identity = 77/218 (35.32%), Postives = 130/218 (59.63%), Query Frame = 1 
Query:   31 VEEYQGLIRRKLGQRLEYCGGNVVVLFDELQKAAPGTLDALAEAMSEHPRVTFERGGQNVSVDSSRVVFLLVSDVGAEGVNAAVLRYRRRSDVVPGALQSAVKRSLDEQWERLRFGKMVDKVVPYLPMDPASNLLVVELKLKKLAETLHGGLYTT----SGLRWHLVQPQYIQYSSYHVTLPNDGREEIIRHQLAAYGARDVEKVSMRRITGAIRNHV 672
            V EYQ  I+ +L + L +C G  +V+FDE+QK  P TLD L  AMS++ ++T+ + G    VD S V+F+L+SD+G   +   +++Y +R ++ P  L++ VK++LD QW+RL+FGKM+ +VVP+LP +    + ++ELKL +L+    G  +      + +  HL + + + Y      L + G E  +R   A YGARDVE   ++++   +  H+
Sbjct:  179 VTEYQEQIKTRLAEHLSWCSGKAIVVFDEVQKVIPHTLDVLTSAMSKNAQITYYKNGVARKVDCSNVIFVLISDIGVAAIEKLLMQYDKREEIPPATLENEVKKALDSQWKRLQFGKMIHQVVPFLPFEQRHVVEIIELKLAQLSSNYQGKYWRRLDFDAAIAPHLSRLESVLYLERRAVL-HAGTE--VRKIFAKYGARDVESGPIQQLKSKLMRHL 393
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BLAST of mRNA_Ecto-sp13_S_contig10560.521.1 vs. uniprot
Match: A0A8K1C6J6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C6J6_PYTOL)

HSP 1 Score: 149 bits (377), Expect = 9.060e-38
Identity = 81/204 (39.71%), Postives = 127/204 (62.25%), Query Frame = 1 
Query:   31 VEEYQGLIRRKLGQRLEYCGGNVVVLFDELQKAAPGTLDALAEAMSEHPRVTFERGGQNVSVDSSRVVFLLVSDVGAEGVNAAVLRYRRRSDVVPGALQSAVKRSLDEQWERLRFGKMVDKVVPYLPMDPASNLLVVELKLKKLAETLHG----GLYTTSGLRWHLVQPQYIQYS-SYHVTLPNDGREEIIRHQLAAYGARDVE 627
            + EY   I+ +L + L  C G  VV+FDE+QK  P TLD L EA+SE  ++++ + G + ++D+S V+F+LVSD+G   +   ++ Y  R DV   AL+SAVK +L+ QW+RL FGKM+D+VVP+LP +  + + ++ELKL++L +   G     L+   G+  ++     ++YS  Y V     G+EEI +   A YGAR+VE
Sbjct:  177 ITEYHTQIKTRLSEHLHQCSGKAVVIFDEVQKVIPHTLDVLMEAVSERAQLSYYKNGVSKTIDTSNVIFVLVSDIGVAEMEHVLIDYENREDVPHSALESAVKTALNAQWKRLNFGKMIDRVVPFLPFEQPNVIQIIELKLEQLDKNYRGVYWHRLWIQDGISEYMSLMDSVEYSVRYRVV---GGKEEISKIY-AKYGARNVE 376
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BLAST of mRNA_Ecto-sp13_S_contig10560.521.1 vs. uniprot
Match: A0A836C741_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C741_9STRA)

HSP 1 Score: 153 bits (386), Expect = 1.510e-37
Identity = 84/185 (45.41%), Postives = 104/185 (56.22%), Query Frame = 1 
Query:   25 SKVEEYQGLIRRKLGQRLEYCGGNVVVLFDELQKAAPGTLDALAEAMSEHPRVTFERGGQNVSVDSSRVVFLLVSDVGAEGVNAAVLRYRRRSDVVPGALQSAVKRSLDEQWERLRFGKMVDKVVPYLPMDPASNLLVVELKLKKLAETL-----HGGLYTTSGLRWHLVQPQYIQYSSYHVTLP 564
            + V  Y   IRR+L   L  C G+ VVLFDELQK APGTLD L  A+   P +T  RG   +SVD S +V LLVSD+GA  V  A+L Y RR DV P A+  AV+R+LD QW+ L FGK+VD V+PYLPM       V+ LK ++L   L        L  T  L W L    Y+ Y  +    P
Sbjct:  730 NNVARYHDQIRRQLADVLVPCAGHAVVLFDELQKVAPGTLDVLVPALENRPMLTLPRGRSYISVDCSNLVVLLVSDIGAAAVRGAILPYARREDVPPSAIMPAVQRALDRQWKHLSFGKVVDWVIPYLPMRRQEVYEVLLLKWRELESQLLELRMAAALLVTEALTWELTGRAYVAYGQFTYRAP 914
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BLAST of mRNA_Ecto-sp13_S_contig10560.521.1 vs. uniprot
Match: A0A485KDB2_9STRA (Aste57867_2684 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KDB2_9STRA)

HSP 1 Score: 143 bits (360), Expect = 2.050e-35
Identity = 74/217 (34.10%), Postives = 124/217 (57.14%), Query Frame = 1 
Query:   31 VEEYQGLIRRKLGQRLEYCGGNVVVLFDELQKAAPGTLDALAEAMSEHPRVTFERGGQNVSVDSSRVVFLLVSDVGAEGVNAAVLRYRRRSDVVPGALQSAVKRSLDEQWERLRFGKMVDKVVPYLPMDPASNLLVVELKLKKLAETLHGGLYT----TSGLRWHLVQPQYIQYSSYHVTLPNDGREEIIRHQLAAYGARDVEKVSMRRITGAIRNH 669
            + EYQ  I+ +L + + +C G  VV+FDE+QK  P TLD L  AMS++ ++T+ +GG    VD S V+F+L+SD+G   +   +++Y  R DV    L++ VK++LD QW+RL FGKM+ +V+P+LP +    + ++ LKL +L++   G  +        +  HL + + + Y     TL        +R   A YGAR+VE   ++++   +  H
Sbjct:  184 LTEYQEQIKTRLAEHIYHCSGKAVVVFDEVQKVIPHTLDVLTSAMSKNAQLTYYKGGVARKVDCSNVIFVLISDIGVANMEKILIQYDNRDDVPFATLENEVKKALDAQWDRLHFGKMIHEVIPFLPFEQRHIVDIINLKLSQLSQHYQGQYWQRLDFNPAVAAHLSRLESVVYLERRATLVGGAT---VRKVFAKYGARNVESGPIQQLKSKLLRH 397
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BLAST of mRNA_Ecto-sp13_S_contig10560.521.1 vs. uniprot
Match: K3WL50_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WL50_GLOUD)

HSP 1 Score: 138 bits (347), Expect = 3.960e-35
Identity = 69/196 (35.20%), Postives = 115/196 (58.67%), Query Frame = 1 
Query:   52 IRRKLGQRLEYCGGNVVVLFDELQKAAPGTLDALAEAMSEHPRVTFERGGQNVSVDSSRVVFLLVSDVGAEGVNAAVLRYRRRSDVVPGALQSAVKRSLDEQWERLRFGKMVDKVVPYLPMDPASNLLVVELKLKKLAETLHGG----LYTTSGLRWHLVQPQYIQYSSYHVTLPNDGREEIIRHQLAAYGARDVE 627
            I  +L + L  C GN VV+FDE+QK  P TLD L E MS   ++ + +GG   ++D+S V+F+ VSD+G   +  A+++Y+ R  +    L++++K +LD QWERL+FGK++DK +P+LP +P     ++  KL +L E   G     L+   G+ + + +   + Y   H+ +  + R+  +    A YGAR+VE
Sbjct:    1 INSRLTEHLHRCSGNAVVVFDEVQKVIPHTLDVLLEMMSARAQLVYSKGGITRTLDTSNVIFVFVSDIGVAEMRDALIKYKSRESIPRIKLENSIKNALDAQWERLQFGKVIDKAIPFLPFEPKHIEEIIAFKLSQLDENYRGKYWHRLWIDPGIPYFMSRLDSMLYEKLHIKIDGEARQPKL---FAKYGARNVE 193
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BLAST of mRNA_Ecto-sp13_S_contig10560.521.1 vs. uniprot
Match: A0A3R7DZS8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7DZS8_9STRA)

HSP 1 Score: 139 bits (349), Expect = 1.640e-34
Identity = 81/218 (37.16%), Postives = 125/218 (57.34%), Query Frame = 1 
Query:   31 VEEYQGLIRRKLGQRLEYCGGNVVVLFDELQKAAPGTLDALAEAMSEHPRVTFERGGQNVSVDSSRVVFLLVSDVGAEGVNAAVLRYRRRSDVVPGALQSAVKRSLDEQWERLRFGKMVDKVVPYLPMDPASNLLVVELKLKKLAETLHGGLYTTS-----GLRWHLVQPQYIQYSSYHVTLPNDGREEIIRHQLAAYGARDVEKVSMRRITGAIRNH 669
            V +YQ  I+ +L + L  C G  +V+FDE+QK  P TLD L  AMS +  +T+ RGG    +D++ VVFLL+SD+G   +   +++Y  R  V    L++ VKR+LD QW RL+FGKMV +VVP+LP +P   +LV++ KL +L+E  + G+Y  S      L  HL   + + Y      +    R   +R   A YGAR+VE   ++++   +  +
Sbjct:   86 VSQYQEQIKSRLAEHLFRCSGKALVVFDEVQKVIPHTLDVLTSAMSSNAHLTYYRGGVERRIDTADVVFLLISDIGVAKMEQLLIQYDDRRHVPATQLENDVKRALDAQWTRLQFGKMVRQVVPFLPFEPQHIVLVIQAKLDQLSE-YYQGVYWKSLAFDPALAPHLSTLESMLYIERRAVV----RGVDVRKVFAKYGARNVETGPLQQLKSKLMRY 298
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BLAST of mRNA_Ecto-sp13_S_contig10560.521.1 vs. uniprot
Match: W4FI45_9STRA (AAA domain-containing protein n=7 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FI45_9STRA)

HSP 1 Score: 139 bits (351), Expect = 5.950e-34
Identity = 81/218 (37.16%), Postives = 125/218 (57.34%), Query Frame = 1 
Query:   31 VEEYQGLIRRKLGQRLEYCGGNVVVLFDELQKAAPGTLDALAEAMSEHPRVTFERGGQNVSVDSSRVVFLLVSDVGAEGVNAAVLRYRRRSDVVPGALQSAVKRSLDEQWERLRFGKMVDKVVPYLPMDPASNLLVVELKLKKLAETLHGGLYTTS-----GLRWHLVQPQYIQYSSYHVTLPNDGREEIIRHQLAAYGARDVEKVSMRRITGAIRNH 669
            V +YQ  I+ +L + L  C G  +V+FDE+QK  P TLD L  AMS +  +T+ RGG    +D++ VVFLL+SD+G   +   +++Y  R  V    L++ VKR+LD QW RL+FGKMV +VVP+LP +P   +LV++ KL +L+E  + G+Y  S      L  HL   + + Y      +    R   +R   A YGAR+VE   ++++   +  +
Sbjct:  200 VSQYQEQIKSRLAEHLFRCSGKALVVFDEVQKVIPHTLDVLTSAMSSNAHLTYHRGGVERRIDTADVVFLLISDIGVAKMEQLLIQYDDRRHVPATQLENDVKRALDAQWTRLQFGKMVRQVVPFLPFEPQHIVLVIQAKLDQLSE-YYQGVYWKSLAFDPALAPHLSTLESMLYIERRAVV----RGVDVRKVFAKYGARNVETGPLQQLKSKLMRY 412
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10560.521.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3V5_ECTSI4.370e-21293.45AAA domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S4DD61_HETAK5.680e-4442.66Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2V512_9STRA9.680e-4243.06Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6G0W9D6_9STRA9.270e-3935.32AAA domain-containing protein n=1 Tax=Aphanomyces ... [more]
A0A8K1C6J6_PYTOL9.060e-3839.71Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A836C741_9STRA1.510e-3745.41P-loop containing nucleoside triphosphate hydrolas... [more]
A0A485KDB2_9STRA2.050e-3534.10Aste57867_2684 protein n=1 Tax=Aphanomyces stellat... [more]
K3WL50_GLOUD3.960e-3535.20Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A3R7DZS8_9STRA1.640e-3437.16Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
W4FI45_9STRA5.950e-3437.16AAA domain-containing protein n=7 Tax=Aphanomyces ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10560contigEcto-sp13_S_contig10560:501..5347 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score585.5
Seed ortholog evalue1.6e-164
Seed eggNOG ortholog2880.D7G3V5
Preferred nameTOR4A
Model size1011
Hectar predicted targeting categoryother localisation
GOsGO:0002576,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0006810,GO:0006887,GO:0008150,GO:0009987,GO:0012505,GO:0016192,GO:0030141,GO:0031091,GO:0031093,GO:0031410,GO:0031974,GO:0031982,GO:0031983,GO:0032940,GO:0034774,GO:0043226,GO:0043227,GO:0043229,GO:0043233,GO:0044422,GO:0044424,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0046903,GO:0051179,GO:0051234,GO:0060205,GO:0070013,GO:0097708,GO:0099503
Exons7
EggNOG free text desc.chaperone cofactor-dependent protein refolding
EggNOG OGsKOG2170@1,KOG2170@2759
Ec32 ortholog descriptionATPase, dynein-related, AAA domain
Ec32 orthologEc-01_005840.3
Cds size996
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10560.521.1prot_Ecto-sp13_S_contig10560.521.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10560 501..5332 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462538.3005524-CDS-Ecto-sp13_S_contig10560:500..6381681462538.3005524-CDS-Ecto-sp13_S_contig10560:500..638Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10560 501..638 -
1681462538.3123906-CDS-Ecto-sp13_S_contig10560:1477..17201681462538.3123906-CDS-Ecto-sp13_S_contig10560:1477..1720Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10560 1478..1720 -
1681462538.322038-CDS-Ecto-sp13_S_contig10560:2608..27391681462538.322038-CDS-Ecto-sp13_S_contig10560:2608..2739Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10560 2609..2739 -
1681462538.333413-CDS-Ecto-sp13_S_contig10560:3181..33151681462538.333413-CDS-Ecto-sp13_S_contig10560:3181..3315Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10560 3182..3315 -
1681462538.3436997-CDS-Ecto-sp13_S_contig10560:3882..39321681462538.3436997-CDS-Ecto-sp13_S_contig10560:3882..3932Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10560 3883..3932 -
1681462538.35172-CDS-Ecto-sp13_S_contig10560:4579..47461681462538.35172-CDS-Ecto-sp13_S_contig10560:4579..4746Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10560 4580..4746 -
1681462538.361292-CDS-Ecto-sp13_S_contig10560:5199..53321681462538.361292-CDS-Ecto-sp13_S_contig10560:5199..5332Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10560 5200..5332 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462538.371799-UTR-Ecto-sp13_S_contig10560:5332..53471681462538.371799-UTR-Ecto-sp13_S_contig10560:5332..5347Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10560 5333..5347 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10560.521.1

>prot_Ecto-sp13_S_contig10560.521.1 ID=prot_Ecto-sp13_S_contig10560.521.1|Name=mRNA_Ecto-sp13_S_contig10560.521.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=332bp
MVASKVEEYQGLIRRKLGQRLEYCGGNVVVLFDELQKAAPGTLDALAEAM
SEHPRVTFERGGQNVSVDSSRVVFLLVSDVGAEGVNAAVLRYRRRSDVVP
GALQSAVKRSLDEQWERLRFGKMVDKVVPYLPMDPASNLLVVELKLKKLA
ETLHGGLYTTSGLRWHLVQPQYIQYSSYHVTLPNDGREEIIRHQLAAYGA
RDVEKVSMRRITGAIRNHVLNPTCAATDEGAEVTGSPAGEDRVGGGGRPG
QGGYGGSSSSNRGGGGGRCWSEPFMVDIRYDASTEQVSFHRCEPDYADGL
TELQREHPDIVEGPKCDLAWRGVLHEHGALA*
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mRNA from alignment at Ecto-sp13_S_contig10560:501..5347-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10560.521.1 ID=mRNA_Ecto-sp13_S_contig10560.521.1|Name=mRNA_Ecto-sp13_S_contig10560.521.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4847bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10560:501..5347- (Ectocarpus species13 EcNAP12_S_4_19m)
AGTGGAGCGGACTACATGGTTGCGTCGAAGGTGGAGGAGTACCAGGGCCT
GATACGGCGGAAGCTTGGTCAGCGGCTGGAGTACTGCGGCGGCAACGTGG
TGGTCTTGTTCGATGAGCTGCAGAAGGCCGCCCCGGGGACGCTGGACGGT
AGGGCTAGAGAGACAGAACTAGACAGACAGACAGAACGAGAGAGGGAGAA
CAGCTTCTCTTACATGGGCGGTACTGCTGCCGTATGTAACAATAAATTGT
TTCGGTGTTTGGATGCAGGCGCGCTATGGTTCAGTCTGTCTGCAACCCTC
TGACACTGCTGCTACTGCGGTACTTCAGCAGCTTCGGGGTGCCTTCAATG
AGATTATCTCTCTCGCCCTCTCTCCAAAAGAGAGGGGTTCGTTCTTCGCC
TTTTGACTTTCATCTTTTGCACCCTTCAATGACGCCTGATAGCCTTATTT
CGCCCGCTGACATTGCCGAGTTAATTTTTTTCTATTTCCGTTCGGGGTGG
GCTTCATGCAATCTTGGCATTCTCGTAGTAGTCGTGTTCACTATGTCCTC
GTCGTATCATAGTCGTAGTTTTATCGTGTTCACCGTCAATCCTGACACCA
GCGCTAGCCGAGGCGATGTCGGAGCATCCTCGAGTGACGTTCGAGCGGGG
AGGTCAGAACGTGTCTGTGGACAGCAGCAGGGTCGTCTTCCTCCTCGTGT
CGGACGTTGGGGCCGAGGGCGTCAACGCGGCCGTGCTCAGGTACCGGAGG
CGCTCCGACGTGGTTCCGGTGAGTTTTGCGGCGACGTTACTGCTTCGTTG
TCCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTACGTG
GTGCTTGCTTGCCTGCCTGCCTGCCTGCCCGCCTGCCTGCCTGCCTGCTT
GCTGGCTTGTTCTTCTTTGCAAAAAGAAGAAAGGCATCGGTCTCTCTCTC
TCTCCCCCCTCCGCTTGCTTAACGTGCTACCGACGGCAAGTTGATGTTCC
TAAAGGATTCGTCTTGTCAGACGCTTCTTTGGCCATTTTTTTTTTTTGTG
AGAGAGAATGGACAACGCCTGCATTGAAATCCGTCTTCTGCCAGCCTCGT
ACCCTCGTGCACCCACCTCGCAAACATCCACAGCTGCTCGTGTCAACAAT
GTCAACAATTCGTGTCGAGTGCCGCGCCTGCCCACTGTCACTGTAGCGCT
TCCAGCCCGCTATCCCTTACTCCACAACCTCGTCGAATATGTCGCCCCGG
AGTTAAAGCTTTTCGCGTCGTTCTATCCCTGTCCCGCTTCGGTGAATCGC
TTTTTTGCCGTCACCGCCGACAGCCTTGAAAAGCGACTATTGTAACTGCT
GGTCGTTTCGTTCCGTCGGCTTGGCTTGTGTCGTGTCCGCTATTGTTTTT
TGTCCGTCGGGACAGGGAGCTCTCCAATCGGCGGTCAAGAGGAGCCTGGA
CGAGCAGTGGGAGCGGTAAGAGATAGGCAGAGACAGGCAAGGATACAGAG
AGCGGAGGGTTAGGGTTTTTGCTCTTCGCCGCCGCTCTGCCCTTGTGTTC
CTTGACGGGGTGATTGCCGGTGGGGGTCTTCTGTTCCGCTTAAGGCAGGG
CGTGGCAATGAAGAGACCCGAAAATGCTGCAGCACTGGTGCAGAGCTAAA
CGTGGTTGAAGATCTTTCTCCGATTGTTTGATCGCGGGGAGTCGGTCGCT
TTCCCCTCGTACGGGGTTTATGGGAGTTACGCAGGGCGCCGTGCGTTCGG
CGGCAGACGCTCCTAAACCCTCGCGGCGCATCGAAAATAGGCGTGGTTAT
GTGCATGCACCAGCTTGGGTTTTGTTTGCGATTCTTGGCGCATCAAGGTC
CCGTCGCGCTCTCATGGCGCAGTCAGCCCTCCTTCAGCATGAACCCTGTC
CAATTCTGTACTTTTAACCCCCGCGTGCATTTCGCGTGTGATGCAACGCA
CGAGCAAGACGTTTGACGGTGGGTCTTGGATGACTGCCTGTGTTTTCCGT
CATTTGTGCTGTGCATTTTTTCCCCTTTTTAGGTTACGGTTCGGCAAGAT
GGTGGACAAGGTGGTGCCTTACCTTCCCATGGACCCCGCCAGCAACCTCC
TCGTCGTAGAGCTCAAGCTCAAGAAGCTGGCCGAGACCCTCCATGGGGGC
TTGTACACGACATCTGGTGGGTAGTGCTGGGGGAATGTAATCGTACAGTG
GCCGTGCATGCCGTAGTCGTTAGACGATTGACTTCGCAAGCCGGGACGGA
GCACGCCGGGTTCTCGCCGGACCAGGCTCTCACATCAGGTGCAGCGGTTG
TGTGTGTCCATGGGGACCGGGAAAACTGAAGAATCGTACCATGTGTAAAA
ACAGATCTGGAGGGGGAAAAGGGGGGCATGGTCGCCCCGTATAGGCGGGT
TGAACGAGACGACACCCCGTGTTCGAGGAGACCTGTTACCACCGTGCCAT
CCGCCAACGCGTTCTACAGCTGACAAACAGATTTCCAAGCGACTGCTGTT
GATTTGTTGTTGGAACTGCTGGTGTTGACGTCGTTGCCGCTTCTTTTCCT
TCTTCCTTCTTCCTGCTTGTGGTGTTGAACATCGTCTTTATTGTTGTCGC
TGTGGCAGGTCTGCGTTGGCACCTGGTCCAGCCCCAGTACATCCAGTACT
CGAGCTACCACGTGACGCTGCCCAACGACGGAAGGGAAGAGATAATCCGG
CACCAGCTCGCGGCGTACGGGGCTAGAGATGTGGAGAAGGTCGGGGAGAA
GCGGGGGGGGGGGGGGGGGGGGCCATTATTGTTTCGTCGCCGAGGCACTG
TTGCGTAAANNNNNNNNNNCTTTCGAGACGGAGCACCGTTCCTACCCCTA
CTAGAGACACCACCAACATTTGGGAGCTCATTGCGTTTCTGCCACAAACT
ACATTTGCGGGGGGGGGGGGTCATCGGTAACCGAGGGTCCCACGACAGCA
CTGCGGTTACAAGTGTGGTTGCATCGACATTTCAGACAAATCTAGATGTA
GGAGAGCGCAGGTGCTGGGTGCTGCGGCTGGTCCCACCCATGTGCTGGTG
TGTGATCGTCTGCTTTCTCTCTTGTCCGGATTCTGGACCCCTCTGCCCAC
TCTATTCTGCGTTGACCTCATCAAGCCACCCGTCGGGGGACCCCGCGGAA
TAGATCGTATTTTTTGTATTTTCCACGGAGACAGGTGCATGTTCATCGGT
CAGCCGGTTGGCCTGGTCACCAAACTCCCGAAATCAGACACCGACGACGG
GGACAGGCGCGCGAAACACGGCGTGAATAGTGTGCACTACGATAGCCTCC
TCACATGAGACTCTATTTATTGGGTGTGCTGCTGCGCGTCTTGTTTTTTT
TTACCGCGGCGTGTTCGCTGCCCCCCCGCGCGCCGCCCGTCATACCTGTA
ACGTCTAGCAAGTGTTTATTGGTTGGTTCCCTCTATTCTGCTTGTCTTGC
CTGTCTTTTTACCATACGGGTTGTCTGCTGCCTCTTTTTTTGCTCTCCTA
TCCATTTGCATTTCGAATAAAGTTAACTGGAGTCGTATGGAATAACTTTG
TGGTTGTAATATGTACCCGTTTTTTGGCTTAATACAAAAATACCCCTACT
TTTCTACGTTAATTGCAAACCTCACAGGTGTCCATGCGAAGGATTACAGG
TGCCATACGCAACCACGTGCTCAACCCCACGTGCGCGGCAACGGACGAAG
GCGCAGAAGTCACAGGGTCCCCAGCGGGGGAGGATAGGGTAGGAGGGGGA
GGACGACCAGGGCAAGGGGGCTATGGCGGCAGCAGTAGCAGTAATAGGGG
TGGCGGCGGCGGTCGGTGCTGGAGCGAGCCGTTCATGGTGGACATCCGGT
ACGACGCCTCGACAGAACAGGTATATACATATGCCACGTATTCGTGCGGT
GTGGTTGTTTAGAAGTGGCGCTGTGCGTATGCGTCGCTCGCTCCAAGCCG
ACGATGAGGAGGTCGTTCGAACAAAAGCGACGACGAAACGAACTTGCTCA
GCATTTCAGAAGTCAGATGGGTGGCGGCATCGACCCCTGGTTGCTACTCA
CTAACCACGCGCGCGTTGTACGCACAACAGCGAAGGTGGCATGTTTCCAC
CGCCGGAAAGTTAGTGATTTCTTTGTTTTTATTATTTGTGGCTTCGTCGC
TCGTGCAGCCGCACATGTGTACCGCAGCGATGCATGCATCCCGCACGTGG
TGTTTGGACGTGTTCGCATCATCGACTAAATACGTAACCATGTTTTGACG
AATGAATAGACGTGCGGAATGCCTCCTAGTGCGACTGAAAACGGTCATGA
TATGGGGTGCTGTGAGGCGCGGGGTCACCGGGTGGAACCAGAAAATGCAC
CAGACGAAGAAAAATACACGTGCTTCGTGTTTACTACTAGTTTCGACCGC
GCTAGTCGGCTGACCAATCATCAGTTTTGTACATGTAGCGGGATAAGAAA
GCATGAACACTTCTAATCGGAAAGGGTAAGGGTTCTACCACGGAGAGGGG
CCCAGGGGCTCGAAGACAGCAGAGTACTGCTTCTGAAGTACAAGGAGAGA
ACTCAATCCTATCAGGCGGCATTGCTCGTTCTCCCATGCTAAAGACATCA
TTGCGTGTTTTTATGATTAGCATCGACCGCGCTCACCGGCTGACCTATGA
GAATACGCCAGTCTCAGTGCGGTGGAAAACACTGCTTGTGTGTGCGTCAA
CCTCGCCAGGTGTCTTTCCACCGGTGTGAACCGGACTACGCCGACGGCCT
GACGGAGCTGCAGCGGGAGCACCCGGACATAGTGGAGGGGCCCAAGTGCG
ACCTGGCTTGGAGAGGGGTGTTGCACGAGCACGGGGCTCTCGCCTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10560:501..5347-

>mRNA_Ecto-sp13_S_contig10560.521.1 ID=mRNA_Ecto-sp13_S_contig10560.521.1|Name=mRNA_Ecto-sp13_S_contig10560.521.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=996bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10560:501..5347- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTTGCGTCGAAGGTGGAGGAGTACCAGGGCCTGATACGGCGGAAGCT
TGGTCAGCGGCTGGAGTACTGCGGCGGCAACGTGGTGGTCTTGTTCGATG
AGCTGCAGAAGGCCGCCCCGGGGACGCTGGACGCGCTAGCCGAGGCGATG
TCGGAGCATCCTCGAGTGACGTTCGAGCGGGGAGGTCAGAACGTGTCTGT
GGACAGCAGCAGGGTCGTCTTCCTCCTCGTGTCGGACGTTGGGGCCGAGG
GCGTCAACGCGGCCGTGCTCAGGTACCGGAGGCGCTCCGACGTGGTTCCG
GGAGCTCTCCAATCGGCGGTCAAGAGGAGCCTGGACGAGCAGTGGGAGCG
GTTACGGTTCGGCAAGATGGTGGACAAGGTGGTGCCTTACCTTCCCATGG
ACCCCGCCAGCAACCTCCTCGTCGTAGAGCTCAAGCTCAAGAAGCTGGCC
GAGACCCTCCATGGGGGCTTGTACACGACATCTGGTCTGCGTTGGCACCT
GGTCCAGCCCCAGTACATCCAGTACTCGAGCTACCACGTGACGCTGCCCA
ACGACGGAAGGGAAGAGATAATCCGGCACCAGCTCGCGGCGTACGGGGCT
AGAGATGTGGAGAAGGTGTCCATGCGAAGGATTACAGGTGCCATACGCAA
CCACGTGCTCAACCCCACGTGCGCGGCAACGGACGAAGGCGCAGAAGTCA
CAGGGTCCCCAGCGGGGGAGGATAGGGTAGGAGGGGGAGGACGACCAGGG
CAAGGGGGCTATGGCGGCAGCAGTAGCAGTAATAGGGGTGGCGGCGGCGG
TCGGTGCTGGAGCGAGCCGTTCATGGTGGACATCCGGTACGACGCCTCGA
CAGAACAGGTGTCTTTCCACCGGTGTGAACCGGACTACGCCGACGGCCTG
ACGGAGCTGCAGCGGGAGCACCCGGACATAGTGGAGGGGCCCAAGTGCGA
CCTGGCTTGGAGAGGGGTGTTGCACGAGCACGGGGCTCTCGCCTAA
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