mRNA_Ecto-sp13_S_contig10557.520.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10557.520.1
Unique NamemRNA_Ecto-sp13_S_contig10557.520.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10557.520.1 vs. uniprot
Match: A0A6H5KEG0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEG0_9PHAE)

HSP 1 Score: 468 bits (1205), Expect = 6.760e-154
Identity = 434/544 (79.78%), Postives = 441/544 (81.07%), Query Frame = 1 
Query:    1 MPVGEGAGGQDGSAATLVRSDQDSGMALVKSKDGRTKWLTVSTDPTSTPPSTTWDERVRTWASMLGVCAPPPSPPSSTRHNHGTPLPTPPPDSPAWGVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVAKDSTXXXXXXXXXXXXXXXXRVGVATSTARRKPVATGKRVGSFARGFLLGLGXXXXXXXXXXXXXXXXXXXXXXXN----PTGKAPAHAXXXXXXAAVAPASTLPPQTREAGEGSIVQDGRGSGDDTAVVPSTPVETMAVSGAGDVTGGRRQRWVKGAPPSPGESDDXXXXXXITFPDNKGGGEGASPCGTCSXXXXXXXXXXXXXXXXXXXXGGDAEGMEWLETGPGGNVAAKANTGGTKTIGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKPTKNTSSSLQLVAAENKTTSTQPVWQSSSGQQEPCRTLNGAAAGRVKAKRAKGGKKLSVSFGRVNLVEFTRDVGGCGVPSDGTWGLALGLPFRETVVDVDGYEASRTEVRGHSGSE 1620
            MPVG+G GGQDGSAATLVRSDQDSGMALVKSKDGRTKWLTVSTDPTSTPPSTTWDERVRTWASMLGVCAP                             XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       XXXXXXXXXXXXXX  RVGVA STARRKPVATGKRVGSFARGFLLGLG XXXXXXXXXXXXXXXXXXXXXX     PTG APAHA      A VAPASTLPPQTREAGE SI+QD R  GDD AVVPSTPVETMAV+GA  VTGGRRQRWVKGAPPS      XXXXXX                    XXXXXXXXXXXXXXXXXXXXGGDAEGMEWLETGPGGNVAAKAN+GGTKTIGGXXXXXXXXXXXXXXXXXXXXXXX      AKPTKN SSSL  VAAENKT STQP+ QSSSGQQEPCRTLNGAAAGR+KAKRAKGGKKLSVSFGRVNLVEFTRDVGGCGVPSDGTWGLALGLPFRETVVDVDGYEASRTE+     SE
Sbjct:    1 MPVGQGVGGQDGSAATLVRSDQDSGMALVKSKDGRTKWLTVSTDPTSTPPSTTWDERVRTWASMLGVCAPXXXXXXXXXXXXX--------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPRVGVAASTARRKPVATGKRVGSFARGFLLGLGGXXXXXXXXXXXXXXXXXXXXXXXXXXXPTGNAPAHAAGKGSGAVVAPASTLPPQTREAGEASILQDERDGGDDMAVVPSTPVETMAVAGADGVTGGRRQRWVKGAPPSXXXXXXXXXXXXXXXXXXXXXXXXXXXX-XXXXXXXXXXXXXXXXXXXXXXXGGDAEGMEWLETGPGGNVAAKANSGGTKTIGGXXXXXXXXXXXXXXXXXXXXXXX------AKPTKNASSSLPSVAAENKTASTQPMLQSSSGQQEPCRTLNGAAAGRIKAKRAKGGKKLSVSFGRVNLVEFTRDVGGCGVPSDGTWGLALGLPFRETVVDVDGYEASRTEILEERTSE 523
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BLAST of mRNA_Ecto-sp13_S_contig10557.520.1 vs. uniprot
Match: D8LJU8_ECTSI (SAP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJU8_ECTSI)

HSP 1 Score: 304 bits (778), Expect = 2.200e-93
Identity = 226/264 (85.61%), Postives = 232/264 (87.88%), Query Frame = 1 
Query:  856 MAVSGAGDVTGGRRQRWVKGAPPSPGESDDXXXXXXITFPDNKGGGEGASPCGTCSXXXXXXXXXXXXXXXXXXXX---------GGDAEGMEWLETGPGGNVAAKANTGGTKTIGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKPTKNTSSSLQLVAAENKTTSTQPVWQSSSGQQEPCRTLNGAAAGRVKAKRAKGGKKLSVSFGRVNLVEFTRDVGGCGVPSDGTWGLALGLPFRETVVDVDGYEASRTEVRGHSGSE 1620
            MAV+GA DVTG RRQRWVKGAPPSPG+S  XXXXXX+T   NKGG  GASPCGTCS  XXXXXXXXXXXXXXXXXX         GGDAEGMEWLETGPGGNVAAKAN+GGTKTIGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKPTKN SSSL   AAENKTT TQPV QSSSG+QEPCRTLNGAAAGRVKAKRAKGGKKLSVSFGRVNLVEFTRDVGGCGVPSDGTWGLALGLPFRETVVDVDGYE SRTE+     SE
Sbjct:    1 MAVAGADDVTGVRRQRWVKGAPPSPGDSXXXXXXXXVTCRSNKGGVGGASPCGTCSPPXXXXXXXXXXXXXXXXXXXXXXXXXXXGGDAEGMEWLETGPGGNVAAKANSGGTKTIGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKPTKNASSSLPSTAAENKTTGTQPVSQSSSGKQEPCRTLNGAAAGRVKAKRAKGGKKLSVSFGRVNLVEFTRDVGGCGVPSDGTWGLALGLPFRETVVDVDGYETSRTEILEERTSE 264
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BLAST of mRNA_Ecto-sp13_S_contig10557.520.1 vs. uniprot
Match: A0A836CPQ0_9STRA (SAP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPQ0_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 6.040e-5
Identity = 25/46 (54.35%), Postives = 33/46 (71.74%), Query Frame = 1 
Query: 1453 FGRVNLVEFTRDVGGCGVPSDGTWGLALGLPFRETVVDVDGYEASR 1590
            FG V ++E  RDVGGCGVPSDG+WGLALG     T + ++ +E+ R
Sbjct:  174 FGAVRVIECHRDVGGCGVPSDGSWGLALGDKIGVTAMSLEAHESLR 219
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10557.520.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KEG0_9PHAE6.760e-15479.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJU8_ECTSI2.200e-9385.61SAP domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A836CPQ0_9STRA6.040e-554.35SAP domain-containing protein n=1 Tax=Tribonema mi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10557contigEcto-sp13_S_contig10557:524..2853 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score310.8
Seed ortholog evalue1.2e-81
Seed eggNOG ortholog2880.D8LJU8
Model size1620
Hectar predicted targeting categoryother localisation
Exons2
EggNOG OGs29KFU@1,2RTQS@2759
Ec32 ortholog descriptionSAP domain
Ec32 orthologEc-23_000210.1
Cds size1620
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462538.2602768-CDS-Ecto-sp13_S_contig10557:523..20181681462538.2602768-CDS-Ecto-sp13_S_contig10557:523..2018Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10557 524..2018 -
1681462538.2731268-CDS-Ecto-sp13_S_contig10557:2728..28531681462538.2731268-CDS-Ecto-sp13_S_contig10557:2728..2853Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10557 2729..2853 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10557.520.1prot_Ecto-sp13_S_contig10557.520.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10557 524..2853 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10557.520.1

>prot_Ecto-sp13_S_contig10557.520.1 ID=prot_Ecto-sp13_S_contig10557.520.1|Name=mRNA_Ecto-sp13_S_contig10557.520.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=540bp
MPVGEGAGGQDGSAATLVRSDQDSGMALVKSKDGRTKWLTVSTDPTSTPP
STTWDERVRTWASMLGVCAPPPSPPSSTRHNHGTPLPTPPPDSPAWGVEE
GGGRHQDKQQQRQQQQHWLSDRDDDYSAATAAAAAAAAAAAAAAAAAAAA
VAKDSTAATGTNSSASAAAASPRVGVATSTARRKPVATGKRVGSFARGFL
LGLGGGGSGSGGGGGGGGGGGASKRSKNPTGKAPAHAAGRGGGAAVAPAS
TLPPQTREAGEGSIVQDGRGSGDDTAVVPSTPVETMAVSGAGDVTGGRRQ
RWVKGAPPSPGESDDSDSDGDITFPDNKGGGEGASPCGTCSPPPPAVAGA
APAPAPAPAPAGGDAEGMEWLETGPGGNVAAKANTGGTKTIGGGGGGGGG
GSKKKKKNKGKGKGGGGGGGGGAKPTKNTSSSLQLVAAENKTTSTQPVWQ
SSSGQQEPCRTLNGAAAGRVKAKRAKGGKKLSVSFGRVNLVEFTRDVGGC
GVPSDGTWGLALGLPFRETVVDVDGYEASRTEVRGHSGSE
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mRNA from alignment at Ecto-sp13_S_contig10557:524..2853-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10557.520.1 ID=mRNA_Ecto-sp13_S_contig10557.520.1|Name=mRNA_Ecto-sp13_S_contig10557.520.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2330bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10557:524..2853- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCTGTTGGTGAAGGAGCCGGGGGACAAGATGGGTCTGCGGCAACCCT
GGTGAGGAGCGACCAAGACTCCGGCATGGCCCTCGTCAAGAGCAAGGATG
GCAGGACGAAGTGGCTCACTGTCAGGTGGGTTTGTAGGAACTGCACATGC
CATCACAGAAGGACTGACAGTGTCAAGACGGTGCTGTGGAAGCTGCGCAG
GTTGACGTGCACATGACATCACAGGAGGACTGATAATGTCAAGAAGGGAC
TGCTGTGGAAGCTGCACATGACACCACTGAAGGGCTGAACAACTGAAAGA
GGTCCTCGTGGCAGCGATGGTTGAGTCAACAGCGGAGATGTGTAAGCTAC
TGGTGTGGATGCTTTTTCATGCTGCATGCTCTCGACAGAGCTGCGTGCAG
CAGCAGTGTTCAAGGCTACTGTAGGTCGAAAAGTATTAGGGTACCCCACC
GAACGCGAACGATCGATTCCTCTACGACGAGGAGGACAGGAAAATCCACA
CGATGCTTGTTCGCAACGGTCCCGCGAACGGTCCCAGGCCTCCATGTTCT
GCACCGTCACATGTGTTGCTGCAGGGGGTGTGGCATCTTGTGCGACCTGC
TTTAGCACCCCCACTGAGACCCACCTCAACCTGTCCGCCTCACTACTTAC
AAAACTCCCTCTACCACGCACACTGTAACATTAATAGTCGAGAAGCAGAC
AAATTATATCGAACTGCTCTTGTGCCCCTACTGTTTTCCCGATCATGCAC
ACCCCCTTTGTTTTCCAACTATGAATGCAAACCCTTTGTTTTTCTCACTC
CTTTGTGCATACTGCGGAACCCCCTCAACATGCAGCACCGATCCGACGTC
GACCCCGCCAAGCACCACGTGGGACGAGCGCGTGAGGACGTGGGCGAGCA
TGCTGGGCGTCTGCGCGCCGCCACCGTCCCCCCCCTCGAGCACGCGTCAC
AACCACGGGACCCCCCTGCCGACGCCGCCTCCCGACAGTCCCGCCTGGGG
CGTCGAGGAGGGAGGGGGGCGGCATCAGGACAAGCAGCAGCAGCGGCAGC
AGCAGCAGCACTGGCTGTCCGATCGCGATGATGACTATTCCGCCGCCACG
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCCGTCGCCAAAGACAGTACTGCTGCCACAGGAACCAATAGCT
CCGCTTCTGCTGCAGCAGCAAGCCCTAGGGTTGGCGTTGCCACAAGCACC
GCGAGGCGAAAACCCGTCGCCACCGGGAAACGCGTGGGCTCTTTCGCGCG
CGGGTTCCTGCTAGGCCTTGGGGGAGGCGGGAGCGGCAGCGGGGGCGGCG
GCGGCGGCGGCGGCGGCGGCGGTGCTTCTAAACGGAGCAAGAATCCAACC
GGCAAGGCGCCTGCCCATGCGGCAGGAAGGGGTGGTGGTGCTGCTGTCGC
ACCGGCGTCGACGCTGCCCCCTCAGACGCGCGAAGCCGGAGAAGGCAGCA
TCGTGCAAGACGGACGTGGTAGTGGTGACGACACGGCGGTGGTGCCGTCG
ACACCGGTCGAGACGATGGCTGTTTCTGGCGCCGGTGACGTCACGGGGGG
GCGGCGGCAGCGGTGGGTCAAGGGCGCCCCGCCCAGCCCCGGCGAAAGCG
ACGACAGCGATAGCGATGGCGACATCACTTTTCCGGACAACAAGGGCGGG
GGTGAAGGTGCTTCGCCCTGTGGCACCTGCTCTCCTCCTCCTCCTGCTGT
TGCTGGTGCTGCCCCAGCCCCAGCCCCAGCCCCAGCCCCAGCGGGCGGTG
ACGCAGAGGGCATGGAGTGGCTAGAGACAGGCCCCGGTGGTAACGTCGCG
GCGAAGGCTAACACCGGCGGGACGAAGACAATTGGGGGCGGTGGCGGCGG
CGGTGGCGGCGGCTCCAAGAAGAAGAAGAAGAACAAAGGCAAGGGCAAGG
GCGGCGGCGGCGGCGGTGGCGGTGGAGCTAAGCCCACGAAGAACACCTCT
TCCTCCCTCCAGTTAGTGGCAGCAGAGAACAAGACCACCAGCACGCAGCC
GGTGTGGCAGTCGTCGTCAGGGCAACAAGAGCCATGCCGCACCCTCAACG
GGGCGGCGGCAGGCAGGGTCAAGGCTAAGCGCGCCAAGGGCGGGAAGAAG
CTGAGTGTTTCCTTCGGCCGAGTTAACCTCGTCGAGTTTACGCGAGACGT
GGGTGGCTGCGGGGTCCCAAGCGATGGGACGTGGGGGCTCGCGCTGGGCC
TGCCCTTTCGAGAAACCGTGGTAGATGTGGACGGCTACGAGGCCTCCAGG
ACTGAGGTGAGAGGGCACTCTGGTTCAGAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10557:524..2853-

>mRNA_Ecto-sp13_S_contig10557.520.1 ID=mRNA_Ecto-sp13_S_contig10557.520.1|Name=mRNA_Ecto-sp13_S_contig10557.520.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1620bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10557:524..2853- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCTGTTGGTGAAGGAGCCGGGGGACAAGATGGGTCTGCGGCAACCCT
GGTGAGGAGCGACCAAGACTCCGGCATGGCCCTCGTCAAGAGCAAGGATG
GCAGGACGAAGTGGCTCACTGTCAGCACCGATCCGACGTCGACCCCGCCA
AGCACCACGTGGGACGAGCGCGTGAGGACGTGGGCGAGCATGCTGGGCGT
CTGCGCGCCGCCACCGTCCCCCCCCTCGAGCACGCGTCACAACCACGGGA
CCCCCCTGCCGACGCCGCCTCCCGACAGTCCCGCCTGGGGCGTCGAGGAG
GGAGGGGGGCGGCATCAGGACAAGCAGCAGCAGCGGCAGCAGCAGCAGCA
CTGGCTGTCCGATCGCGATGATGACTATTCCGCCGCCACGGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCC
GTCGCCAAAGACAGTACTGCTGCCACAGGAACCAATAGCTCCGCTTCTGC
TGCAGCAGCAAGCCCTAGGGTTGGCGTTGCCACAAGCACCGCGAGGCGAA
AACCCGTCGCCACCGGGAAACGCGTGGGCTCTTTCGCGCGCGGGTTCCTG
CTAGGCCTTGGGGGAGGCGGGAGCGGCAGCGGGGGCGGCGGCGGCGGCGG
CGGCGGCGGCGGTGCTTCTAAACGGAGCAAGAATCCAACCGGCAAGGCGC
CTGCCCATGCGGCAGGAAGGGGTGGTGGTGCTGCTGTCGCACCGGCGTCG
ACGCTGCCCCCTCAGACGCGCGAAGCCGGAGAAGGCAGCATCGTGCAAGA
CGGACGTGGTAGTGGTGACGACACGGCGGTGGTGCCGTCGACACCGGTCG
AGACGATGGCTGTTTCTGGCGCCGGTGACGTCACGGGGGGGCGGCGGCAG
CGGTGGGTCAAGGGCGCCCCGCCCAGCCCCGGCGAAAGCGACGACAGCGA
TAGCGATGGCGACATCACTTTTCCGGACAACAAGGGCGGGGGTGAAGGTG
CTTCGCCCTGTGGCACCTGCTCTCCTCCTCCTCCTGCTGTTGCTGGTGCT
GCCCCAGCCCCAGCCCCAGCCCCAGCCCCAGCGGGCGGTGACGCAGAGGG
CATGGAGTGGCTAGAGACAGGCCCCGGTGGTAACGTCGCGGCGAAGGCTA
ACACCGGCGGGACGAAGACAATTGGGGGCGGTGGCGGCGGCGGTGGCGGC
GGCTCCAAGAAGAAGAAGAAGAACAAAGGCAAGGGCAAGGGCGGCGGCGG
CGGCGGTGGCGGTGGAGCTAAGCCCACGAAGAACACCTCTTCCTCCCTCC
AGTTAGTGGCAGCAGAGAACAAGACCACCAGCACGCAGCCGGTGTGGCAG
TCGTCGTCAGGGCAACAAGAGCCATGCCGCACCCTCAACGGGGCGGCGGC
AGGCAGGGTCAAGGCTAAGCGCGCCAAGGGCGGGAAGAAGCTGAGTGTTT
CCTTCGGCCGAGTTAACCTCGTCGAGTTTACGCGAGACGTGGGTGGCTGC
GGGGTCCCAAGCGATGGGACGTGGGGGCTCGCGCTGGGCCTGCCCTTTCG
AGAAACCGTGGTAGATGTGGACGGCTACGAGGCCTCCAGGACTGAGGTGA
GAGGGCACTCTGGTTCAGAA
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