mRNA_Ecto-sp13_S_contig10552.518.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10552.518.1 vs. uniprot
Match: A0A6H5KRU5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KRU5_9PHAE) HSP 1 Score: 585 bits (1507), Expect = 1.290e-206 Identity = 339/353 (96.03%), Postives = 344/353 (97.45%), Query Frame = 1
Query: 1 EVNLGKVISTLREDYPRIFFDPPAFDIFTEEIELRDPTGVAFRGISNYKRVFATLRFFRQTFMNDATTTFRLTYDWSKQQVRVTWNVVLQLKARQRPIYVDGISAYHINSDGLAYRHDLETVVVNGRAVEPPFAYAWINLPAWVSRGAVAKPAGAGAALPTPHAVVGGVPMQLFEQQQGEADDAVGAMFDAARTDSELRGDYMQALSTVLMMDTDGVEESGGGEGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-KNNAGGWFGSKGAELACETSWDCTGGMVCCDFVLLKVCCSNGIRQPKFGELIPSLVPIPGRGRNENDNPKRIPPAGGSSRPPQRPG 1056
EVNLGKVISTLREDYPRIFFDPPAFDIFTEEIELRDPTGVAFRGISNYKRVFATLRFFRQTFMNDATTTFRLTYDWSKQQVRVTWNVVLQLKARQRPIYVDGISAYHINSDGLA+RHDLETVVVNGRAVEPPFAYAWINLPAWVSRGAVAKP+GAGAALPTPHAV+GG P QLFEQQQGEA+DAVGAMFDAARTDSELRGDYMQALSTVLMMDTDGV ESG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX KNNAGGWFGSKGAELACETSWDCTGGMVCCDFVLLKVCCSNGIRQPKFGELIPSLVPIPGRGRNENDNPKRIPPAGG+SRPPQRPG
Sbjct: 135 EVNLGKVISTLREDYPRIFFDPPAFDIFTEEIELRDPTGVAFRGISNYKRVFATLRFFRQTFMNDATTTFRLTYDWSKQQVRVTWNVVLQLKARQRPIYVDGISAYHINSDGLAHRHDLETVVVNGRAVEPPFAYAWINLPAWVSRGAVAKPSGAGAALPTPHAVIGGAPTQLFEQQQGEAEDAVGAMFDAARTDSELRGDYMQALSTVLMMDTDGVSESGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNNAGGWFGSKGAELACETSWDCTGGMVCCDFVLLKVCCSNGIRQPKFGELIPSLVPIPGRGRNENDNPKRIPPAGGTSRPPQRPG 487
BLAST of mRNA_Ecto-sp13_S_contig10552.518.1 vs. uniprot
Match: D8LJ76_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ76_ECTSI) HSP 1 Score: 217 bits (553), Expect = 2.590e-64 Identity = 166/350 (47.43%), Postives = 214/350 (61.14%), Query Frame = 1
Query: 7 NLGKVISTLREDYPRIFFDPPAFDIFTEEIELRDPTGVAFRGISNYKRVFATLRFFRQTFMNDATTTFRLTYDWSKQQVRVTWNVVLQLKARQ-RPIYVDGISAYHINSDGLAYRHDLETVVVNGRAVEPPFAYAWINLPAWVSRGAVAKPAGAGAALPTPHAVVGGVPMQLFEQQQGEADDAVGAMFDAARTDSELRGDYMQALSTVLMMDTDGVEESGGGEGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNNA--------------GGWFGSKGAELACETSWDCTGGMVCCDFVLLKVCCSNGIRQPKFGELIPSLVPIPGRGRNENDNPKR 1011
NLGKVI TLREDY + +P F+I+T +++LRDP+GV G+ YKR+F T RF R+T ++D +T FRL+YD S+QQVR+TW++VL RP+++DG S Y ++++GL RHD+ET++VNG V+PPFA AW+ LP+WV++G AGA + + D G M D R+ G + V + T + G A XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX G W LACETS+DCTGG VCCD V++K+CCSNG+ Q K G+LIPSL+PIPGRGR E D +R
Sbjct: 25 NLGKVIDTLREDYATMLDEPLNFEIYTPDLQLRDPSGVVLTGLPAYKRMFGTFRFVRKTLVHDVSTVFRLSYDGSRQQVRITWHLVLDATPMVVRPVHLDGTSVYGLSTEGLVRRHDVETIIVNGTPVKPPFAQAWMQLPSWVTQGRSGGVAGAPGMISV----------------SSSSGDVWGGMDDFNRSGRRRSGGNFERRIPVDLSGTAMAFQGLAGVRAASITRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGMWPIDYKGPLACETSFDCTGGYVCCDLVVVKICCSNGVMQRKPGDLIPSLIPIPGRGRTELDQCQR 358
BLAST of mRNA_Ecto-sp13_S_contig10552.518.1 vs. uniprot
Match: A0A6H5JCH5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCH5_9PHAE) HSP 1 Score: 195 bits (495), Expect = 4.850e-54 Identity = 184/422 (43.60%), Postives = 233/422 (55.21%), Query Frame = 1
Query: 7 NLGKVISTLREDYPRIFFDPPAFDIFTEEIELRDPTGVAFRGISNYKRVFATLRFFRQTFMNDATTTFRLTYDWSKQQ---------------------------------------VRVTWNVVLQLKAR-QRPIYVDGISAYHINSDGLAYRHDLETVVVNGRAVEPPFAYAWINLPAWVSRGAVAKPAGAGAALPTPHAVVGGVPMQLFEQQQGEADD------AVGAMFDAARTDSELRGDYM--QALSTV----LMMDTDGVEESGGGEGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNNA-----------------------------------GGWFGSKGAELACETSWDCTGGMVCCDFVLLKVCCSNGIRQPKFGELIPSLVPIPGRGRNENDNPKR 1011
NLGKVI TLREDYP + +P FDI+T +++LRDP+GV G+ YKR+F T RF R+T ++D +T FRL+YD S+QQ VRVTW++VL RP+++DG S Y ++++GL RHDLET++VNG V+PPFA AW+ LP+WV++G AGA T + GGV +GE DD G F+ R +L G M Q L+ V + G+ + G + +XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX G W LACETS+DCTGG VCCD V++K+CCSNG+ Q K G+LIPSL+PIPGRGR E D +R
Sbjct: 113 NLGKVIDTLREDYPTMLDEPLNFDIYTPDLQLRDPSGVILTGLPAYKRMFGTFRFVRKTLVHDVSTVFRLSYDGSRQQDDEQLLVHPCEMQPWTGRNDWPSVIGSVGNNAPSSRGRVVRVTWHLVLDATPMVARPVHLDGTSVYGLSTEGLVRRHDLETIIVNGTPVKPPFAQAWMQLPSWVTQGRSGGVAGAPGM--TSVSSSGGV--------RGEIDDFDRSGRRSGGKFER-RIPMDLSGTAMAFQGLAEVRAASITRRRKGLLAAVGFDASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGMWPIDYKGPLACETSFDCTGGYVCCDLVVVKICCSNGVMQRKPGDLIPSLIPIPGRGRTELDQCQR 523
BLAST of mRNA_Ecto-sp13_S_contig10552.518.1 vs. uniprot
Match: A0A836CIZ0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIZ0_9STRA) HSP 1 Score: 155 bits (391), Expect = 8.960e-41 Identity = 111/329 (33.74%), Postives = 142/329 (43.16%), Query Frame = 1
Query: 1 EVNLGKVISTLREDYPRIFFDPPAFDIFTEEIELRDPTGVAFRGISNYKRVFATLRFFRQTFMNDATTTFRLTYDWSKQQVRVTWNVVLQLKARQ-RPIYVDGISAYHINSDGLAYRHDLETVVVNGRAVEPPFAY-AWINLPAWV--SRGAVAKPAGAGAALPTPHAVVGGVPMQLFEQQQGEADDAVGAMFDAARTDSELRGDYMQALSTVLMMDTDGVEESGGGEGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNNAGGWFGSKGAELACETSWDCTGGMVCCDFVLLKVCCSNGIRQPKFGELIPSLVPIP 975
E NLGKVI TLR DYP + +P + I+T++I ++DP+GV F+GI YKR+FATLRFFR TF++ T FR+TYDW++Q+VRV W++ L KAR P++VD IS YHIN +G HDLET++V A + L WV +G A A AA T + + LRGD SGGG+ CE SWDC M CCDF L KVCC+ G+ P P LVPIP
Sbjct: 41 EPNLGKVIDTLRSDYPELLNEPLDYSIYTDDITVKDPSGVEFKGIGTYKRLFATLRFFRHTFVDTVDTRFRVTYDWARQRVRVNWHMALSFKARAGHPVFVDCISVYHINDEGFVSAHDLETIMVXXXXXXXXXXXXAMMGL--WVRSEKGVGA----AAAATTTAMSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAAALRGD-----------------SSGGGDAGKDRSKAPRLAWPKVDLPS-------------------------------------GCEDSWDCESPMTCCDFALFKVCCNQGMGSPVTE---PRLVPIP 306
BLAST of mRNA_Ecto-sp13_S_contig10552.518.1 vs. uniprot
Match: A0A7S4A516_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A516_9STRA) HSP 1 Score: 130 bits (327), Expect = 4.380e-31 Identity = 90/325 (27.69%), Postives = 128/325 (39.38%), Query Frame = 1
Query: 1 EVNLGKVISTLREDYPRIFFDPPAFDIFTEEIELRDPTGVAFRGISNYKRVFATLRFFRQTFMNDATTTFRLTYDWSKQQVRVTWNVVLQLKARQRPIYVDGISAYHINSDGLAYRHDLETVVVNGRAVEPPFAYAWINLPAWVSRGAVAKPAGAGAALPTPHAVVGGVPMQLFEQQQGEADDAVGAMFDAARTDSELRGDYMQALSTVLMMDTDGVEESGGGEGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNNAGGWFGSKGAELACETSWDCTGGMVCCDFVLLKVCCSNGIRQPKFGELIPSLVPIP 975
E+NLG+ I LR D P ++DI+ + ++L DP+GV RG+ NYK+ F +R FR+ ++ TF+L YDWSK+ ++VTW + + YVD SA+H++ G ++H ++ V V GR + PP++ W+ +V G P P AV P FE D V M A+S +G CE WDC M CCDFV+ K+CC G+ P F E P LVPIP
Sbjct: 81 ELNLGRAIDALRSDVPAFADRELSWDIYADNVQLADPSGVQTRGLQNYKQFFGVIRMFRRVMIDKVDITFKLRYDWSKKIIKVTWYSKWYARGSSKAAYVDATSAFHLDEQGKIFKHVVDRVQVGGRPLSPPYSVGWLAFREYVLAGLDG---------PRPAAV----PSFGFEASDIGQDALV----------------LMSAMSASXXXXXXXXXXXXXSDGESEAPPPSKKKAPRNKEKKQKRKLLPGQ-----------------------------CEGMWDCDSPMECCDFVMFKMCCRGGLGIPAFLEPAPVLVPIP 347
BLAST of mRNA_Ecto-sp13_S_contig10552.518.1 vs. uniprot
Match: A0A0M0JBU2_9EUKA (Uncharacterized protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JBU2_9EUKA) HSP 1 Score: 108 bits (270), Expect = 7.330e-23 Identity = 99/361 (27.42%), Postives = 136/361 (37.67%), Query Frame = 1
Query: 1 EVNLGKVISTLREDYPRIFFDPPAFDIFTEEIELRDPTGVAFRGISNYKRVFATLRFFRQTFMNDATTTFRLTYDWSKQQVRVTWNVVLQLK-----------ARQRPIYVDGISAYHINSDGLAYRHDLETVVVNGRA-VEPPFAYAWINLPAWVSRGAVAKPAGAGAALPTPHAVVGGVPMQLFEQQQGEADDAVGAMFDAARTDSELRGDYMQALSTVLMMDTDGVEESGGGEGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNNAG-----GWFGSKGAELACETSWDCTGGMVCCDFVLLKVCCSNGIRQPKF-----GELIPSLVPIPGRGRNENDNPKRIP 1017
++N G+ I LR DYPR+F + P IFT+ IEL DP+G G Y+RVF LRF R+T M DA RL D + +RV WN L ++ +++DG+S Y ++ DGL +H LE +V+ G+ + P A+ AW + G TP A V F D+ L + S T+G E G A FG G + +CETS+DC MVCCD + VCC+ G+ P G L +PIP R+ P R P
Sbjct: 80 KLNQGRAIDVLRHDYPRLFTERPDMSIFTDNIELHDPSGKRLAGKKQYERVFDALRFLRRTTMQDAQVGIRLVAD--DKSIRVRWNAKLWMRDPATGLTTLVNGEPALVHIDGVSVYDLDKDGLIRQHRLENIVLTGQEPLATPIQLAF----AWPATGYA-----------TPQAAV---------------------PFFQPLADALLNFGFSSTSSGASEAGTEGTESEDGRRAAPTRRAPPPQASASDDETPLERAARERAEDAAKQQRLRDLRTPKTAPKSGVDLFGLTGPQ-SCETSYDCDAPMVCCDLLFATVCCTGGLLIPTADRRMQGSLQRQAIPIPVE-RDRAPQPPRYP 400
BLAST of mRNA_Ecto-sp13_S_contig10552.518.1 vs. uniprot
Match: A0A7S0PU43_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0PU43_9EUKA) HSP 1 Score: 105 bits (262), Expect = 1.070e-22 Identity = 57/130 (43.85%), Postives = 79/130 (60.77%), Query Frame = 1
Query: 1 EVNLGKVISTLREDYPRIFFDPPAFDIFTEEIELRDPTGVAFRGISNYKRVFATLRFFRQTFMNDATTTFRLTYDWSKQQVRVTWNVVLQLK----ARQRPIYVDGISAYHINSDGLAYRHDLETVVVNG 378
E+N G+VI TLR DYPR+F D P IF E++ELRD +GV RG Y +VF LRF R+T M+DA T+ + + +R+ W+ L+L+ QR +DG+S Y ++SDGL H LE +V G
Sbjct: 92 ELNQGRVIDTLRYDYPRLFVDKPDLSIFREDVELRDESGVRLRGKGAYSKVFDMLRFLRRTGMSDAEVTYHIFVN--DATIRMRWSAKLKLRDPAFGMQRLDILDGVSVYELDSDGLVRSHTLEYIVPRG 219
BLAST of mRNA_Ecto-sp13_S_contig10552.518.1 vs. uniprot
Match: A0A7R9Y840_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y840_9STRA) HSP 1 Score: 103 bits (258), Expect = 4.730e-22 Identity = 57/149 (38.26%), Postives = 87/149 (58.39%), Query Frame = 1
Query: 19 VISTLREDYPRIFFDPPAFDIFTEEIELRDPTGVAFRGISNYKRVFATLRFFRQTFMNDATTTFRLTYDWSKQQVRVTWNVVLQLK----------ARQRPIYVDGISAYHINSDGLAYRHDLETVVVNGRAVEPPFAYAWINLPAWVS 435
++ TLR+DYP +F P I+T++IE+ DP+GV G +NY+R++A LR ++ M DA + + Y + VRV W+V + LK + Q PI +DGIS YH+NSDGL Y+H +E + N + A A+ +L AW +
Sbjct: 95 ILDTLRDDYPYLFDQEPDLSIYTDDIEVTDPSGVPLIGKTNYQRMWAGLRAMKRYAMRDARLRYSMLYCQASNTVRVFWSVDVVLKPAIALYIAAGSEQEPIRIDGISVYHVNSDGLVYKHSVENLNYNNKLNRYIEAAAF-DLQAWAA 242
BLAST of mRNA_Ecto-sp13_S_contig10552.518.1 vs. uniprot
Match: A0A7S1ZVV7_9STRA (Hypothetical protein (Fragment) n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZVV7_9STRA) HSP 1 Score: 100 bits (248), Expect = 4.270e-20 Identity = 52/140 (37.14%), Postives = 83/140 (59.29%), Query Frame = 1
Query: 1 EVNLGKVISTLREDYPRIFFDPPAFDIFTEEIELRDPTGVAFRGISNYKRVF----ATLRFFRQTFMNDATTTFRLTYDWSKQQVRVTWNVVLQLKAR----QRPIYVDGISAYHINSDGLAYRHDLETVVVNGRAVEPP 396
E+NLG+ + LR+DYP + P F+I+ ++IE+ DP+GV G+ NY++ F A + FF ++ TFRL YD ++ +RV+WN L + + ++VDGIS Y +N +G+ RH LE ++VN V+ P
Sbjct: 100 EINLGRAVDRLRKDYPDMLVANPDFEIYHDDIEVIDPSGVKLHGLGNYEKAFSFIHAVINFFYCK--EESGLTFRLHYDAERRNIRVSWNAFLVPRTIYGGVRNKLHVDGISVYELNREGIVMRHKLERILVNNVPVKEP 237
BLAST of mRNA_Ecto-sp13_S_contig10552.518.1 vs. uniprot
Match: A0A7S0J6I1_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0J6I1_9EUKA) HSP 1 Score: 96.3 bits (238), Expect = 5.910e-19 Identity = 56/151 (37.09%), Postives = 85/151 (56.29%), Query Frame = 1
Query: 1 EVNLGKVISTLREDYPRIFFDPPAFDIFTEEIELRDPTGVAFR-GISNYKRVFATLRFFRQTFMNDATTTFRLTYDWSKQQVRVTWN--------VVLQLKARQRPIY-VDGISAYHINSDGLAYRHDLETVVVNGRAVEPPFAYAWINLP 423
++N GK I +LR DYPRI P IFT+ +EL DP+G R G Y +VF LRF RQT + T+RL + + +RV W+ VV+ ++ + P+ +DG+SAY ++ +G +H LE +V++G + P +AW LP
Sbjct: 86 QLNQGKAIDSLRHDYPRILTHEPDLSIFTDGVELYDPSGNRLRSGRGEYAQVFTALRFLRQTMAVGSEVTYRLVV--ANEVIRVRWSAKLYMRPMVVIPGRSAEPPLLQLDGVSAYELDDEGWIRQHRLENIVLSGPSTGVPAEFAWTVLP 234 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10552.518.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10552.518.1 >prot_Ecto-sp13_S_contig10552.518.1 ID=prot_Ecto-sp13_S_contig10552.518.1|Name=mRNA_Ecto-sp13_S_contig10552.518.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=355bp EVNLGKVISTLREDYPRIFFDPPAFDIFTEEIELRDPTGVAFRGISNYKRback to top mRNA from alignment at Ecto-sp13_S_contig10552:3771..5787- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10552.518.1 ID=mRNA_Ecto-sp13_S_contig10552.518.1|Name=mRNA_Ecto-sp13_S_contig10552.518.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2017bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10552:3771..5787- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10552:3771..5787- >mRNA_Ecto-sp13_S_contig10552.518.1 ID=mRNA_Ecto-sp13_S_contig10552.518.1|Name=mRNA_Ecto-sp13_S_contig10552.518.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1065bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10552:3771..5787- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |