mRNA_Ecto-sp13_S_contig10552.518.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10552.518.1
Unique NamemRNA_Ecto-sp13_S_contig10552.518.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig10552.518.1 vs. uniprot
Match: A0A6H5KRU5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KRU5_9PHAE)

HSP 1 Score: 585 bits (1507), Expect = 1.290e-206
Identity = 339/353 (96.03%), Postives = 344/353 (97.45%), Query Frame = 1
Query:    1 EVNLGKVISTLREDYPRIFFDPPAFDIFTEEIELRDPTGVAFRGISNYKRVFATLRFFRQTFMNDATTTFRLTYDWSKQQVRVTWNVVLQLKARQRPIYVDGISAYHINSDGLAYRHDLETVVVNGRAVEPPFAYAWINLPAWVSRGAVAKPAGAGAALPTPHAVVGGVPMQLFEQQQGEADDAVGAMFDAARTDSELRGDYMQALSTVLMMDTDGVEESGGGEGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-KNNAGGWFGSKGAELACETSWDCTGGMVCCDFVLLKVCCSNGIRQPKFGELIPSLVPIPGRGRNENDNPKRIPPAGGSSRPPQRPG 1056
            EVNLGKVISTLREDYPRIFFDPPAFDIFTEEIELRDPTGVAFRGISNYKRVFATLRFFRQTFMNDATTTFRLTYDWSKQQVRVTWNVVLQLKARQRPIYVDGISAYHINSDGLA+RHDLETVVVNGRAVEPPFAYAWINLPAWVSRGAVAKP+GAGAALPTPHAV+GG P QLFEQQQGEA+DAVGAMFDAARTDSELRGDYMQALSTVLMMDTDGV ESG     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX KNNAGGWFGSKGAELACETSWDCTGGMVCCDFVLLKVCCSNGIRQPKFGELIPSLVPIPGRGRNENDNPKRIPPAGG+SRPPQRPG
Sbjct:  135 EVNLGKVISTLREDYPRIFFDPPAFDIFTEEIELRDPTGVAFRGISNYKRVFATLRFFRQTFMNDATTTFRLTYDWSKQQVRVTWNVVLQLKARQRPIYVDGISAYHINSDGLAHRHDLETVVVNGRAVEPPFAYAWINLPAWVSRGAVAKPSGAGAALPTPHAVIGGAPTQLFEQQQGEAEDAVGAMFDAARTDSELRGDYMQALSTVLMMDTDGVSESGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNNAGGWFGSKGAELACETSWDCTGGMVCCDFVLLKVCCSNGIRQPKFGELIPSLVPIPGRGRNENDNPKRIPPAGGTSRPPQRPG 487          
BLAST of mRNA_Ecto-sp13_S_contig10552.518.1 vs. uniprot
Match: D8LJ76_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ76_ECTSI)

HSP 1 Score: 217 bits (553), Expect = 2.590e-64
Identity = 166/350 (47.43%), Postives = 214/350 (61.14%), Query Frame = 1
Query:    7 NLGKVISTLREDYPRIFFDPPAFDIFTEEIELRDPTGVAFRGISNYKRVFATLRFFRQTFMNDATTTFRLTYDWSKQQVRVTWNVVLQLKARQ-RPIYVDGISAYHINSDGLAYRHDLETVVVNGRAVEPPFAYAWINLPAWVSRGAVAKPAGAGAALPTPHAVVGGVPMQLFEQQQGEADDAVGAMFDAARTDSELRGDYMQALSTVLMMDTDGVEESGGGEGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNNA--------------GGWFGSKGAELACETSWDCTGGMVCCDFVLLKVCCSNGIRQPKFGELIPSLVPIPGRGRNENDNPKR 1011
            NLGKVI TLREDY  +  +P  F+I+T +++LRDP+GV   G+  YKR+F T RF R+T ++D +T FRL+YD S+QQVR+TW++VL       RP+++DG S Y ++++GL  RHD+ET++VNG  V+PPFA AW+ LP+WV++G     AGA   +                     + D  G M D  R+     G   +    V +  T    +   G  A     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                  G W       LACETS+DCTGG VCCD V++K+CCSNG+ Q K G+LIPSL+PIPGRGR E D  +R
Sbjct:   25 NLGKVIDTLREDYATMLDEPLNFEIYTPDLQLRDPSGVVLTGLPAYKRMFGTFRFVRKTLVHDVSTVFRLSYDGSRQQVRITWHLVLDATPMVVRPVHLDGTSVYGLSTEGLVRRHDVETIIVNGTPVKPPFAQAWMQLPSWVTQGRSGGVAGAPGMISV----------------SSSSGDVWGGMDDFNRSGRRRSGGNFERRIPVDLSGTAMAFQGLAGVRAASITRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGMWPIDYKGPLACETSFDCTGGYVCCDLVVVKICCSNGVMQRKPGDLIPSLIPIPGRGRTELDQCQR 358          
BLAST of mRNA_Ecto-sp13_S_contig10552.518.1 vs. uniprot
Match: A0A6H5JCH5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCH5_9PHAE)

HSP 1 Score: 195 bits (495), Expect = 4.850e-54
Identity = 184/422 (43.60%), Postives = 233/422 (55.21%), Query Frame = 1
Query:    7 NLGKVISTLREDYPRIFFDPPAFDIFTEEIELRDPTGVAFRGISNYKRVFATLRFFRQTFMNDATTTFRLTYDWSKQQ---------------------------------------VRVTWNVVLQLKAR-QRPIYVDGISAYHINSDGLAYRHDLETVVVNGRAVEPPFAYAWINLPAWVSRGAVAKPAGAGAALPTPHAVVGGVPMQLFEQQQGEADD------AVGAMFDAARTDSELRGDYM--QALSTV----LMMDTDGVEESGGGEGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNNA-----------------------------------GGWFGSKGAELACETSWDCTGGMVCCDFVLLKVCCSNGIRQPKFGELIPSLVPIPGRGRNENDNPKR 1011
            NLGKVI TLREDYP +  +P  FDI+T +++LRDP+GV   G+  YKR+F T RF R+T ++D +T FRL+YD S+QQ                                       VRVTW++VL       RP+++DG S Y ++++GL  RHDLET++VNG  V+PPFA AW+ LP+WV++G     AGA     T  +  GGV        +GE DD        G  F+  R   +L G  M  Q L+ V    +     G+  + G + +XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                       G W       LACETS+DCTGG VCCD V++K+CCSNG+ Q K G+LIPSL+PIPGRGR E D  +R
Sbjct:  113 NLGKVIDTLREDYPTMLDEPLNFDIYTPDLQLRDPSGVILTGLPAYKRMFGTFRFVRKTLVHDVSTVFRLSYDGSRQQDDEQLLVHPCEMQPWTGRNDWPSVIGSVGNNAPSSRGRVVRVTWHLVLDATPMVARPVHLDGTSVYGLSTEGLVRRHDLETIIVNGTPVKPPFAQAWMQLPSWVTQGRSGGVAGAPGM--TSVSSSGGV--------RGEIDDFDRSGRRSGGKFER-RIPMDLSGTAMAFQGLAEVRAASITRRRKGLLAAVGFDASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGMWPIDYKGPLACETSFDCTGGYVCCDLVVVKICCSNGVMQRKPGDLIPSLIPIPGRGRTELDQCQR 523          
BLAST of mRNA_Ecto-sp13_S_contig10552.518.1 vs. uniprot
Match: A0A836CIZ0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIZ0_9STRA)

HSP 1 Score: 155 bits (391), Expect = 8.960e-41
Identity = 111/329 (33.74%), Postives = 142/329 (43.16%), Query Frame = 1
Query:    1 EVNLGKVISTLREDYPRIFFDPPAFDIFTEEIELRDPTGVAFRGISNYKRVFATLRFFRQTFMNDATTTFRLTYDWSKQQVRVTWNVVLQLKARQ-RPIYVDGISAYHINSDGLAYRHDLETVVVNGRAVEPPFAY-AWINLPAWV--SRGAVAKPAGAGAALPTPHAVVGGVPMQLFEQQQGEADDAVGAMFDAARTDSELRGDYMQALSTVLMMDTDGVEESGGGEGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNNAGGWFGSKGAELACETSWDCTGGMVCCDFVLLKVCCSNGIRQPKFGELIPSLVPIP 975
            E NLGKVI TLR DYP +  +P  + I+T++I ++DP+GV F+GI  YKR+FATLRFFR TF++   T FR+TYDW++Q+VRV W++ L  KAR   P++VD IS YHIN +G    HDLET++V            A + L  WV   +G  A    A AA  T  +                               + LRGD                  SGGG+                                                          CE SWDC   M CCDF L KVCC+ G+  P      P LVPIP
Sbjct:   41 EPNLGKVIDTLRSDYPELLNEPLDYSIYTDDITVKDPSGVEFKGIGTYKRLFATLRFFRHTFVDTVDTRFRVTYDWARQRVRVNWHMALSFKARAGHPVFVDCISVYHINDEGFVSAHDLETIMVXXXXXXXXXXXXAMMGL--WVRSEKGVGA----AAAATTTAMSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAAALRGD-----------------SSGGGDAGKDRSKAPRLAWPKVDLPS-------------------------------------GCEDSWDCESPMTCCDFALFKVCCNQGMGSPVTE---PRLVPIP 306          
BLAST of mRNA_Ecto-sp13_S_contig10552.518.1 vs. uniprot
Match: A0A7S4A516_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A516_9STRA)

HSP 1 Score: 130 bits (327), Expect = 4.380e-31
Identity = 90/325 (27.69%), Postives = 128/325 (39.38%), Query Frame = 1
Query:    1 EVNLGKVISTLREDYPRIFFDPPAFDIFTEEIELRDPTGVAFRGISNYKRVFATLRFFRQTFMNDATTTFRLTYDWSKQQVRVTWNVVLQLKARQRPIYVDGISAYHINSDGLAYRHDLETVVVNGRAVEPPFAYAWINLPAWVSRGAVAKPAGAGAALPTPHAVVGGVPMQLFEQQQGEADDAVGAMFDAARTDSELRGDYMQALSTVLMMDTDGVEESGGGEGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNNAGGWFGSKGAELACETSWDCTGGMVCCDFVLLKVCCSNGIRQPKFGELIPSLVPIP 975
            E+NLG+ I  LR D P       ++DI+ + ++L DP+GV  RG+ NYK+ F  +R FR+  ++    TF+L YDWSK+ ++VTW      +   +  YVD  SA+H++  G  ++H ++ V V GR + PP++  W+    +V  G            P P AV    P   FE      D  V                 M A+S                +G                                                         CE  WDC   M CCDFV+ K+CC  G+  P F E  P LVPIP
Sbjct:   81 ELNLGRAIDALRSDVPAFADRELSWDIYADNVQLADPSGVQTRGLQNYKQFFGVIRMFRRVMIDKVDITFKLRYDWSKKIIKVTWYSKWYARGSSKAAYVDATSAFHLDEQGKIFKHVVDRVQVGGRPLSPPYSVGWLAFREYVLAGLDG---------PRPAAV----PSFGFEASDIGQDALV----------------LMSAMSASXXXXXXXXXXXXXSDGESEAPPPSKKKAPRNKEKKQKRKLLPGQ-----------------------------CEGMWDCDSPMECCDFVMFKMCCRGGLGIPAFLEPAPVLVPIP 347          
BLAST of mRNA_Ecto-sp13_S_contig10552.518.1 vs. uniprot
Match: A0A0M0JBU2_9EUKA (Uncharacterized protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JBU2_9EUKA)

HSP 1 Score: 108 bits (270), Expect = 7.330e-23
Identity = 99/361 (27.42%), Postives = 136/361 (37.67%), Query Frame = 1
Query:    1 EVNLGKVISTLREDYPRIFFDPPAFDIFTEEIELRDPTGVAFRGISNYKRVFATLRFFRQTFMNDATTTFRLTYDWSKQQVRVTWNVVLQLK-----------ARQRPIYVDGISAYHINSDGLAYRHDLETVVVNGRA-VEPPFAYAWINLPAWVSRGAVAKPAGAGAALPTPHAVVGGVPMQLFEQQQGEADDAVGAMFDAARTDSELRGDYMQALSTVLMMDTDGVEESGGGEGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNNAG-----GWFGSKGAELACETSWDCTGGMVCCDFVLLKVCCSNGIRQPKF-----GELIPSLVPIPGRGRNENDNPKRIP 1017
            ++N G+ I  LR DYPR+F + P   IFT+ IEL DP+G    G   Y+RVF  LRF R+T M DA    RL  D   + +RV WN  L ++                +++DG+S Y ++ DGL  +H LE +V+ G+  +  P   A+    AW + G             TP A V                      F     D+ L   +    S      T+G E   G   A                                                    FG  G + +CETS+DC   MVCCD +   VCC+ G+  P       G L    +PIP   R+    P R P
Sbjct:   80 KLNQGRAIDVLRHDYPRLFTERPDMSIFTDNIELHDPSGKRLAGKKQYERVFDALRFLRRTTMQDAQVGIRLVAD--DKSIRVRWNAKLWMRDPATGLTTLVNGEPALVHIDGVSVYDLDKDGLIRQHRLENIVLTGQEPLATPIQLAF----AWPATGYA-----------TPQAAV---------------------PFFQPLADALLNFGFSSTSSGASEAGTEGTESEDGRRAAPTRRAPPPQASASDDETPLERAARERAEDAAKQQRLRDLRTPKTAPKSGVDLFGLTGPQ-SCETSYDCDAPMVCCDLLFATVCCTGGLLIPTADRRMQGSLQRQAIPIPVE-RDRAPQPPRYP 400          
BLAST of mRNA_Ecto-sp13_S_contig10552.518.1 vs. uniprot
Match: A0A7S0PU43_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0PU43_9EUKA)

HSP 1 Score: 105 bits (262), Expect = 1.070e-22
Identity = 57/130 (43.85%), Postives = 79/130 (60.77%), Query Frame = 1
Query:    1 EVNLGKVISTLREDYPRIFFDPPAFDIFTEEIELRDPTGVAFRGISNYKRVFATLRFFRQTFMNDATTTFRLTYDWSKQQVRVTWNVVLQLK----ARQRPIYVDGISAYHINSDGLAYRHDLETVVVNG 378
            E+N G+VI TLR DYPR+F D P   IF E++ELRD +GV  RG   Y +VF  LRF R+T M+DA  T+ +  +     +R+ W+  L+L+      QR   +DG+S Y ++SDGL   H LE +V  G
Sbjct:   92 ELNQGRVIDTLRYDYPRLFVDKPDLSIFREDVELRDESGVRLRGKGAYSKVFDMLRFLRRTGMSDAEVTYHIFVN--DATIRMRWSAKLKLRDPAFGMQRLDILDGVSVYELDSDGLVRSHTLEYIVPRG 219          
BLAST of mRNA_Ecto-sp13_S_contig10552.518.1 vs. uniprot
Match: A0A7R9Y840_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y840_9STRA)

HSP 1 Score: 103 bits (258), Expect = 4.730e-22
Identity = 57/149 (38.26%), Postives = 87/149 (58.39%), Query Frame = 1
Query:   19 VISTLREDYPRIFFDPPAFDIFTEEIELRDPTGVAFRGISNYKRVFATLRFFRQTFMNDATTTFRLTYDWSKQQVRVTWNVVLQLK----------ARQRPIYVDGISAYHINSDGLAYRHDLETVVVNGRAVEPPFAYAWINLPAWVS 435
            ++ TLR+DYP +F   P   I+T++IE+ DP+GV   G +NY+R++A LR  ++  M DA   + + Y  +   VRV W+V + LK          + Q PI +DGIS YH+NSDGL Y+H +E +  N +      A A+ +L AW +
Sbjct:   95 ILDTLRDDYPYLFDQEPDLSIYTDDIEVTDPSGVPLIGKTNYQRMWAGLRAMKRYAMRDARLRYSMLYCQASNTVRVFWSVDVVLKPAIALYIAAGSEQEPIRIDGISVYHVNSDGLVYKHSVENLNYNNKLNRYIEAAAF-DLQAWAA 242          
BLAST of mRNA_Ecto-sp13_S_contig10552.518.1 vs. uniprot
Match: A0A7S1ZVV7_9STRA (Hypothetical protein (Fragment) n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZVV7_9STRA)

HSP 1 Score: 100 bits (248), Expect = 4.270e-20
Identity = 52/140 (37.14%), Postives = 83/140 (59.29%), Query Frame = 1
Query:    1 EVNLGKVISTLREDYPRIFFDPPAFDIFTEEIELRDPTGVAFRGISNYKRVF----ATLRFFRQTFMNDATTTFRLTYDWSKQQVRVTWNVVLQLKAR----QRPIYVDGISAYHINSDGLAYRHDLETVVVNGRAVEPP 396
            E+NLG+ +  LR+DYP +    P F+I+ ++IE+ DP+GV   G+ NY++ F    A + FF      ++  TFRL YD  ++ +RV+WN  L  +      +  ++VDGIS Y +N +G+  RH LE ++VN   V+ P
Sbjct:  100 EINLGRAVDRLRKDYPDMLVANPDFEIYHDDIEVIDPSGVKLHGLGNYEKAFSFIHAVINFFYCK--EESGLTFRLHYDAERRNIRVSWNAFLVPRTIYGGVRNKLHVDGISVYELNREGIVMRHKLERILVNNVPVKEP 237          
BLAST of mRNA_Ecto-sp13_S_contig10552.518.1 vs. uniprot
Match: A0A7S0J6I1_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0J6I1_9EUKA)

HSP 1 Score: 96.3 bits (238), Expect = 5.910e-19
Identity = 56/151 (37.09%), Postives = 85/151 (56.29%), Query Frame = 1
Query:    1 EVNLGKVISTLREDYPRIFFDPPAFDIFTEEIELRDPTGVAFR-GISNYKRVFATLRFFRQTFMNDATTTFRLTYDWSKQQVRVTWN--------VVLQLKARQRPIY-VDGISAYHINSDGLAYRHDLETVVVNGRAVEPPFAYAWINLP 423
            ++N GK I +LR DYPRI    P   IFT+ +EL DP+G   R G   Y +VF  LRF RQT    +  T+RL    + + +RV W+        VV+  ++ + P+  +DG+SAY ++ +G   +H LE +V++G +   P  +AW  LP
Sbjct:   86 QLNQGKAIDSLRHDYPRILTHEPDLSIFTDGVELYDPSGNRLRSGRGEYAQVFTALRFLRQTMAVGSEVTYRLVV--ANEVIRVRWSAKLYMRPMVVIPGRSAEPPLLQLDGVSAYELDDEGWIRQHRLENIVLSGPSTGVPAEFAWTVLP 234          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10552.518.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KRU5_9PHAE1.290e-20696.03Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LJ76_ECTSI2.590e-6447.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JCH5_9PHAE4.850e-5443.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CIZ0_9STRA8.960e-4133.74Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S4A516_9STRA4.380e-3127.69Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A0M0JBU2_9EUKA7.330e-2327.42Uncharacterized protein n=1 Tax=Chrysochromulina t... [more]
A0A7S0PU43_9EUKA1.070e-2243.85Hypothetical protein (Fragment) n=1 Tax=Coccolithu... [more]
A0A7R9Y840_9STRA4.730e-2238.26Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S1ZVV7_9STRA4.270e-2037.14Hypothetical protein (Fragment) n=3 Tax=Ditylum br... [more]
A0A7S0J6I1_9EUKA5.910e-1937.09Hypothetical protein (Fragment) n=1 Tax=Calcidiscu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10552contigEcto-sp13_S_contig10552:3771..5787 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score602.8
Seed ortholog evalue1e-169
Seed eggNOG ortholog2880.D8LGI3
Model size1065
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.Uncharacterized conserved protein (DUF2358)
EggNOG OGs2CYHV@1,2S4H3@2759
Cds size1065
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462538.181185-CDS-Ecto-sp13_S_contig10552:3770..47241681462538.181185-CDS-Ecto-sp13_S_contig10552:3770..4724Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10552 3771..4724 -
1681462538.1921525-CDS-Ecto-sp13_S_contig10552:5676..57871681462538.1921525-CDS-Ecto-sp13_S_contig10552:5676..5787Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10552 5677..5787 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10552.518.1prot_Ecto-sp13_S_contig10552.518.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10552 3771..5787 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10552.518.1

>prot_Ecto-sp13_S_contig10552.518.1 ID=prot_Ecto-sp13_S_contig10552.518.1|Name=mRNA_Ecto-sp13_S_contig10552.518.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=355bp
EVNLGKVISTLREDYPRIFFDPPAFDIFTEEIELRDPTGVAFRGISNYKR
VFATLRFFRQTFMNDATTTFRLTYDWSKQQVRVTWNVVLQLKARQRPIYV
DGISAYHINSDGLAYRHDLETVVVNGRAVEPPFAYAWINLPAWVSRGAVA
KPAGAGAALPTPHAVVGGVPMQLFEQQQGEADDAVGAMFDAARTDSELRG
DYMQALSTVLMMDTDGVEESGGGEGAAAGATPDGSDGDGSGEDGAAAAAA
ATAAANQKRARAEKEKKNNAGGWFGSKGAELACETSWDCTGGMVCCDFVL
LKVCCSNGIRQPKFGELIPSLVPIPGRGRNENDNPKRIPPAGGSSRPPQR
PGTW*
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mRNA from alignment at Ecto-sp13_S_contig10552:3771..5787-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10552.518.1 ID=mRNA_Ecto-sp13_S_contig10552.518.1|Name=mRNA_Ecto-sp13_S_contig10552.518.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2017bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10552:3771..5787- (Ectocarpus species13 EcNAP12_S_4_19m)
GAGGTGAACCTGGGCAAGGTGATCTCCACGCTGAGGGAGGACTACCCGCG GATATTCTTCGACCCTCCCGCGTTCGACATCTTTACCGAGGAGATCGAGC TGCGCGATCCGGTAGGAGAACGGCGTGCTTTAGTTTTGCCAACTCTTTCA TCAAAATATTGAGAACCTTCGGAAACCATTTTCGGAGCCCTTACTGCCGC TGTTGTTGAGGCCTCACTGCGATTCCCCCATCAAGGACGTGGTGGTGGTC TTTCGTTAGGGTAGTGGTAGCCTGCGCGTGATGCCCAGCCGTGTTGTCTT GAATACAGAGAGATATAGAGTTCCGTCGACGTTTATCTTGATTTTCTAGG GCTGTCCTTGAAGTACGTCGCGCTCCGATTGAGAATTGTTGTACTTCCAT TTTGCCGACCGCTGTCTGACTCGGTAGGGTACAAATAGCGGTTAGACGCC CACGTTCCGGCTTGTCGTGTGGCACGCGGCACACAGCTGATTGGTGGTTG AGTGCGGGGTGTATGATAGACAGGATTGTGGGCTAGTTCGTGAAGTGCAC ATTTATTTTTCTCTGGACAGGTGCCATACGTACCCAAGAGTATCCTACAA GCAGTCAAGATACGCACACCAGTCGAACGAACAGGAATTTTGAATCATGC CGAAACTCTCGTTTGGTATGTGCAACACCTTTTTATTTGATGGTATTTCG GGAGCCTCGTTTTCGGATTCAAGTTCGACCTACGCTGTCTCGCCGTTGCC GTAAGATGGAGGGACGGACTATAATAGGTGACGATTGAAGTCAGGCAGCG ATGCTGTTCACACTGCGGTGCCGTTGATGAGTCAGTCCTGGAGGTCGTGT GTAGGGTTTGCCGTGATCGTGCACCGGTAGTGACCGGGTATCCGCCACTG GAGAATTTAGCCCCACGTCCCAAAACGATGCAGAACTTGTTTGTCGCCGT GTCAATCTCGACGCTGCTTTGCATAAATCCCGAGAGAACACCAAGTTTTG CCCACTGGTCGCACCCCCGCCTCCGCTGACTCCCTTTCTCCCGATCGCAA ATCGTACCAACAGACGGGCGTGGCGTTCCGAGGCATCTCGAACTACAAGC GAGTGTTCGCGACGCTCCGATTCTTCCGGCAGACGTTCATGAACGACGCG ACCACCACCTTCCGCCTCACCTACGACTGGAGCAAGCAGCAGGTGCGCGT GACGTGGAACGTGGTGCTCCAGCTCAAGGCCCGGCAGCGGCCCATCTACG TCGACGGCATCTCCGCCTACCACATCAACAGCGACGGCCTCGCCTACCGT CACGACCTGGAAACGGTGGTCGTCAACGGACGCGCCGTCGAGCCCCCGTT CGCCTACGCGTGGATAAACCTCCCCGCCTGGGTCTCCCGCGGGGCGGTGG CCAAGCCGGCGGGTGCGGGCGCGGCCCTACCTACCCCCCACGCGGTGGTC GGCGGGGTTCCCATGCAGCTGTTCGAGCAGCAGCAGGGTGAAGCGGACGA CGCTGTCGGCGCCATGTTCGACGCCGCTAGGACGGACTCCGAGCTCCGCG GGGACTACATGCAGGCGCTCTCGACGGTGCTGATGATGGACACGGACGGG GTAGAGGAGAGCGGCGGCGGCGAGGGCGCCGCCGCCGGTGCGACGCCGGA CGGGTCGGACGGCGACGGGAGCGGCGAGGACGGGGCAGCAGCCGCCGCCG CCGCCACCGCCGCCGCTAACCAAAAGAGGGCGAGGGCGGAGAAGGAGAAG AAGAACAACGCGGGCGGGTGGTTCGGCTCCAAGGGGGCGGAGCTCGCGTG CGAGACGTCCTGGGACTGCACCGGCGGCATGGTCTGCTGCGACTTCGTCC TCCTCAAGGTGTGCTGCAGCAACGGCATCCGGCAGCCGAAGTTCGGCGAG CTCATCCCGAGCCTGGTGCCTATCCCCGGTAGGGGCAGGAACGAGAACGA CAACCCGAAGAGGATTCCGCCCGCCGGCGGAAGTTCGCGGCCTCCTCAAC GACCGGGTACTTGGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10552:3771..5787-

>mRNA_Ecto-sp13_S_contig10552.518.1 ID=mRNA_Ecto-sp13_S_contig10552.518.1|Name=mRNA_Ecto-sp13_S_contig10552.518.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1065bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10552:3771..5787- (Ectocarpus species13 EcNAP12_S_4_19m)
GAGGTGAACCTGGGCAAGGTGATCTCCACGCTGAGGGAGGACTACCCGCG
GATATTCTTCGACCCTCCCGCGTTCGACATCTTTACCGAGGAGATCGAGC
TGCGCGATCCGACGGGCGTGGCGTTCCGAGGCATCTCGAACTACAAGCGA
GTGTTCGCGACGCTCCGATTCTTCCGGCAGACGTTCATGAACGACGCGAC
CACCACCTTCCGCCTCACCTACGACTGGAGCAAGCAGCAGGTGCGCGTGA
CGTGGAACGTGGTGCTCCAGCTCAAGGCCCGGCAGCGGCCCATCTACGTC
GACGGCATCTCCGCCTACCACATCAACAGCGACGGCCTCGCCTACCGTCA
CGACCTGGAAACGGTGGTCGTCAACGGACGCGCCGTCGAGCCCCCGTTCG
CCTACGCGTGGATAAACCTCCCCGCCTGGGTCTCCCGCGGGGCGGTGGCC
AAGCCGGCGGGTGCGGGCGCGGCCCTACCTACCCCCCACGCGGTGGTCGG
CGGGGTTCCCATGCAGCTGTTCGAGCAGCAGCAGGGTGAAGCGGACGACG
CTGTCGGCGCCATGTTCGACGCCGCTAGGACGGACTCCGAGCTCCGCGGG
GACTACATGCAGGCGCTCTCGACGGTGCTGATGATGGACACGGACGGGGT
AGAGGAGAGCGGCGGCGGCGAGGGCGCCGCCGCCGGTGCGACGCCGGACG
GGTCGGACGGCGACGGGAGCGGCGAGGACGGGGCAGCAGCCGCCGCCGCC
GCCACCGCCGCCGCTAACCAAAAGAGGGCGAGGGCGGAGAAGGAGAAGAA
GAACAACGCGGGCGGGTGGTTCGGCTCCAAGGGGGCGGAGCTCGCGTGCG
AGACGTCCTGGGACTGCACCGGCGGCATGGTCTGCTGCGACTTCGTCCTC
CTCAAGGTGTGCTGCAGCAACGGCATCCGGCAGCCGAAGTTCGGCGAGCT
CATCCCGAGCCTGGTGCCTATCCCCGGTAGGGGCAGGAACGAGAACGACA
ACCCGAAGAGGATTCCGCCCGCCGGCGGAAGTTCGCGGCCTCCTCAACGA
CCGGGTACTTGGTAA
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