mRNA_Ecto-sp13_S_contig10543.511.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10543.511.1 vs. uniprot
Match: A0A6H5K678_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K678_9PHAE) HSP 1 Score: 550 bits (1416), Expect = 9.080e-189 Identity = 300/330 (90.91%), Postives = 308/330 (93.33%), Query Frame = 3
Query: 24 GTHDVNVRRPH*RGAAAQRVTSAAMCGRNQALHKAQGQGTVTDNTPMNKPETRHRQHHPINKQAERGPSSTGNVPSKERRRHPQTIVLKKSCDFCFKRRKRCDGRAQRRCSFCVEKGRPECHYSMRSLPSMSSKTPTVVPISGEEDAARDDSPPTGLSLWAAAEVDDEDNADTGAQHTAKK-GSGAAVGVTGLVLPFKRARLSASPATGLAGLLENELLGDFFGCLGFLSIATESIVRGAMVSVMRANNVLNQQGAITPARPXXXXXXXXXXXXXXTEEAPVSSVPTEETCWRNAVTTEDAALPRDASTCILWCAIALGALVRGYPLPHV 1010
GT VNV+RPH RGAAAQRVTSAAMC RNQALHKAQG+GTVTDNTPMNKPETRHRQHHP+NK AERGPSSTGNVPSKERRRHPQTIVLKKSCDFCFKRRKRCDGRAQRRCSFC+EKGRPECHYSMRSLPS S KTPTVVP SGEEDA RDDSP GLSL A AEVD++ NADTGAQHTAKK GSG AVGVTGLVLPFKRARLSASPATGLAGLLENELLGDFFGCLGFLS+ATESI+RGAMVSVMRANNVL QQGA TPARPXXXXXXXXXXXXX TEE PVSSV TEE CWRNAVTTEDAALPRDASTCILWCAIALGALVRGYPLPHV
Sbjct: 13 GTQHVNVQRPHQRGAAAQRVTSAAMCRRNQALHKAQGRGTVTDNTPMNKPETRHRQHHPMNKPAERGPSSTGNVPSKERRRHPQTIVLKKSCDFCFKRRKRCDGRAQRRCSFCIEKGRPECHYSMRSLPSKS-KTPTVVPTSGEEDAVRDDSPSPGLSLRARAEVDNDANADTGAQHTAKKKGSGTAVGVTGLVLPFKRARLSASPATGLAGLLENELLGDFFGCLGFLSLATESIIRGAMVSVMRANNVLIQQGATTPARPXXXXXXXXXXXXXDTEETPVSSVRTEEACWRNAVTTEDAALPRDASTCILWCAIALGALVRGYPLPHV 341
BLAST of mRNA_Ecto-sp13_S_contig10543.511.1 vs. uniprot
Match: D8LSE2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSE2_ECTSI) HSP 1 Score: 426 bits (1094), Expect = 3.770e-141 Identity = 223/285 (78.25%), Postives = 235/285 (82.46%), Query Frame = 3
Query: 414 MSSKTPTVVPISGEEDAARDDSPPTGLSLWAAAEVDDEDNADTGAQHTAKK-GSGAAVGVTGLVLPFKRARLSASPATGLAGLLENELLGDFFGCLGFLSIATESIVRGAMVSVMRANNVLNQQGAITPARPXXXXXXXXXXXXXXTEEAPVSSVPTEETCWRNAVTTEDAALPRDASTCILWCAIALGALVRGYPLPHVGGNEGRFLV-AKAGCSRLSSQCWTPFSIGYFDRNPSRSPFESCCSRRNKSAIPVPTSIFLVLCSNELYA*PSSIAEQQVQRYVHL 1262
MSS+TPTVVP SGEEDA RDDSPPTG+S WA AE D++ NADTG Q TAKK GS AVGVTGLVLPFKRAR+SASPATGLAGLLENELLG+FFGCLGFLS+ATESIVRGAMVSVMRA+N LNQ+GA TPARP TEEAP SSV TEE CWR AVTTEDAALPRDASTCILWCAIALGALVRGYPLPHVGGN L K G +S QCWTPFSIGY RNPSR PFESCC RRNKSA P+PT +FLVLCSNELYA PSSIAEQQVQRYVHL
Sbjct: 1 MSSETPTVVPASGEEDAVRDDSPPTGVSFWAGAEADNDANADTGTQPTAKKKGSETAVGVTGLVLPFKRARISASPATGLAGLLENELLGEFFGCLGFLSLATESIVRGAMVSVMRASNGLNQRGATTPARPRPATDGAWLVEEDDTEEAPASSVRTEEACWRKAVTTEDAALPRDASTCILWCAIALGALVRGYPLPHVGGNSNAALWWLKQGAEGMSRQCWTPFSIGYVARNPSRYPFESCCRRRNKSATPLPTPVFLVLCSNELYAWPSSIAEQQVQRYVHL 285
BLAST of mRNA_Ecto-sp13_S_contig10543.511.1 vs. uniprot
Match: A0A6H5K1T9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1T9_9PHAE) HSP 1 Score: 116 bits (290), Expect = 2.900e-26 Identity = 67/102 (65.69%), Postives = 74/102 (72.55%), Query Frame = 3
Query: 708 SIATESIVRGAMVSVMRANNVLNQQGAITPARPXXXXXXXXXXXXXXTEEAPVSS-VPTEETCWRNAVTTEDAALPRDASTCILWCAIALGALVRGYPLPHV 1010
S+ +S VRGAMVSVM+AN +LNQ+GA + P TE P+SS V TEE CWRNAVTTEDAALPRDASTCILWCAIALGALVRGYPL HV
Sbjct: 35 SVPLDSDVRGAMVSVMQAN-LLNQRGAAS-CGPSPAAARCGLAEEDDTEATPLSSSVRTEEACWRNAVTTEDAALPRDASTCILWCAIALGALVRGYPLAHV 134
BLAST of mRNA_Ecto-sp13_S_contig10543.511.1 vs. uniprot
Match: A0A6H5L0W7_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0W7_9PHAE) HSP 1 Score: 121 bits (303), Expect = 5.980e-26 Identity = 89/246 (36.18%), Postives = 119/246 (48.37%), Query Frame = 3
Query: 291 KSCDFCFKRRKRCDGRAQRRCSFCVEKGRPECHYSMRSLPSMSSKTPTVVP-ISGEEDAARDDSPPTGLSLWAAAEVDDEDNADTGAQHTAKKGSGAAVGVTGLVLPFKRARLSASPATGLAGLLENELLGDFFGCLGFLSIATESIVRGAMVSVMRANNVLNQQGAITPARPXXXXXXXXXXXXXXTEEAPVSSVPTEET---CWRNAVTTEDAALPRDASTCILWCAIALGALVRGYPLPHVGG 1016
KSC FC KR++ CD R R CS C+EK +P CHY ++ LP ++ PT + D S +G + A + + A GA ++ + KR RLSASPATGL G+ EN LG FFGCLG L + TES VR AMV VM + Q G +R T + + + +E C A+ LP + C++WCAIALGAL+RG P+ V G
Sbjct: 56 KSCTFCAKRKRSCDSRRPR-CSLCIEKNQPHCHYPLKPLPKRAAAKPTAARRLXXXXXXXSDCSISSGDASKAKRLAEAHEVASYGAGSVLATVDTRSMPTVRGRMSLKRCRLSASPATGLVGMQENGFLGAFFGCLGILPLTTESTVRNAMVEVM-----MRQCGGQAYSR---------------TGGSGMEGLAEDEEKGWCGGGALARRHT-LPDHPAKCMMWCAIALGALMRGVPVERVTG 279
BLAST of mRNA_Ecto-sp13_S_contig10543.511.1 vs. uniprot
Match: D7FTD5_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTD5_ECTSI) HSP 1 Score: 113 bits (282), Expect = 6.390e-25 Identity = 88/273 (32.23%), Postives = 121/273 (44.32%), Query Frame = 3
Query: 225 PSSTGNVPSKERRRHPQTIVLKKSCDFCFKRRKRCDGRAQRRCSFCVEKGRPECHYSMRSLPSMSSKTPTVVPIS------GEEDAARDDSPPT-----GLSLWAAAEVDDEDNADTGAQHTAKKGSGAAVGVTGLVLPFKRARLSASPATGLAGLLENELLGDFFGCLGFLSIATESIVRGAMVSVMRANNVLNQQGAITPARPXXXXXXXXXXXXXXTEEAPVSSVPTEETCWRNAVTTEDAALPRDASTCILWCAIALGALVRGYPLPHV 1010
P+ G+ + ++ Q KSC C +R++ CD R R CS+C+EK RP C Y ++S ++ P + + G A R +PP G+ + A A AD + T + KR RL ASPATGL G+ E+ L DFFGC G L + TES VR AMV +M GA P + T A E+ C + P A+ C++WCAIALGAL+RG P+ HV
Sbjct: 19 PAQPGHAAAAAAQQSTQLSATYKSCMLCARRKRACDSRKPR-CSYCIEKKRPYCFYRLKSATKPGAEGPPSLSSTFSASWGGVNTAMRPANPPRVASHGGVEVLATA-------ADIWSMPTVPE-----------YPSIKRCRLRASPATGLVGMKESGFLCDFFGCFGILPLTTESTVRNAMVEIM--------MGAELPRK-----RYNEEHLGVRTRWAEDEGEGEEKGCSGDRTVVRRGTQPDHAAMCMMWCAIALGALMRGVPVEHV 259
BLAST of mRNA_Ecto-sp13_S_contig10543.511.1 vs. uniprot
Match: D7FTE0_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTE0_ECTSI) HSP 1 Score: 115 bits (288), Expect = 5.060e-24 Identity = 90/246 (36.59%), Postives = 119/246 (48.37%), Query Frame = 3
Query: 291 KSCDFCFKRRKRCDGRAQRRCSFCVEKGRPECHYSMRSLPSMSSKTPTVVP-ISGEEDAARDDSPPTGLSLWAA--AEVDDEDNADTGAQHTAKKGSGAAVGVTGLVLPFKRARLSASPATGLAGLLENELLGDFFGCLGFLSIATESIVRGAMVSVMRANNVLNQQGAITPARPXXXXXXXXXXXXXXTEEAPVSSVPTEETCWRNA-VTTEDAALPRDASTCILWCAIALGALVRGYPLPHVGG 1016
KSC FC KR++ CD + R CS C+EK +P CHY ++ LP ++ P +S ++ D S +G + A AE + + DTG A + + V G + KR RLS+SPATGL G+ EN L DFFGC G L + TES VR AMV VM + Q G E+ EE W LP + C++WCAIALGAL+RG + HV G
Sbjct: 56 KSCTFCAKRKRACDSQRPR-CSLCIEKKQPYCHYPLKPLPKRAAAKPAAARRLSSSSPSSSDCSISSGDASKAKRLAEAQEGASYDTGGV-LATVNTRSMPTVRGR-MSLKRCRLSSSPATGLVGMPENGFLCDFFGCFGILPLTTESTVRNAMVEVM-----MRQCGG------QAYSGTGGSGMEGLAED--------EEKDWHGGGALARRHTLPDHPAKCMMWCAIALGALMRGISVEHVMG 279
BLAST of mRNA_Ecto-sp13_S_contig10543.511.1 vs. uniprot
Match: A0A6H5L0K0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0K0_9PHAE) HSP 1 Score: 109 bits (272), Expect = 5.820e-22 Identity = 86/254 (33.86%), Postives = 110/254 (43.31%), Query Frame = 3
Query: 291 KSCDFCFKRRKRCDGRAQRRCSFCVEKGRPECHYSMRSLPSMSSKTPTVVPISGEEDAARDDSPPTGLSLWAAAEVDDEDNADTGAQHTAKKGSGAAVGVTGLV-----------LPFKRARLSASPATGLAGLLENELLGDFFGCLGFLSIATESIVRGAMVSVMRANNVLNQQGAITPARPXXXXXXXXXXXXXXTEEAPVSSVPTEETCWRNA-VTTEDAALPRDASTCILWCAIALGALVRGYPLPHVGG 1016
KSC FC KR++ CD + R C+EK +P CHY ++ L ++ PT D + A + + A A G+G GV V + KR RLS+SPATGL G+ EN L DFFGCLG L + TES VR AMV VM + Q G E+ EE WR LP + C++WCAIALGAL+RG P+ V G
Sbjct: 56 KSCTFCAKRKRACDSQKPRCRVLCIEKNQPHCHYPLKPLLKRAAAKPTAAXXXXXXXXXXSDCSISSGDASKAKRLAE-------APEVASYGTG---GVLATVDTRSMPTVRGRMSLKRCRLSSSPATGLVGMPENGFLCDFFGCLGILPLTTESTVRNAMVEVM-----MRQCGG------QVYSGTGGSGMEGLAED--------EEKGWRGGGALARRHTLPDHPAKCMMWCAIALGALMRGVPVERVTG 280
BLAST of mRNA_Ecto-sp13_S_contig10543.511.1 vs. uniprot
Match: A0A6H5JYW4_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYW4_9PHAE) HSP 1 Score: 104 bits (260), Expect = 1.670e-20 Identity = 87/247 (35.22%), Postives = 114/247 (46.15%), Query Frame = 3
Query: 270 PQTIVLKKSCDFCFKRRKRCDGRAQRRCSFCVEKGRPECHYSMRSLPSMSSKTPTVVPISGEEDAARDDSPPTGLSLWAAAEVDDEDNADTGAQHTAKKGSGAAVGVTGLVLPFKRARLSASPATGLAGLLENELLGDFFGCLGFLSIATESIVRGAMVSVMRANNVLNQQGAITPARPXXXXXXXXXXXXXXTEEAPVSSVPTEETCWRNAVTTEDAALPRDASTCILWCAIALGALVRGYPLPHV 1010
P +++SC C +++KRCDG Q+ C CV G +C Y MR + + D A G + +A+ GA V T +LP KR RLSASPATGL G+ EN L DFFGC+GF+ + + S +R MV +M + L QQ AI A +E + P CW A +E LP DASTC WCAIALGAL +G P+ V
Sbjct: 24 PTLPGMRRSCTECGRKKKRCDG--QQPCRRCVGSG-GQCAYIMRRWHLLKPHQQQHQSQRPDRDGAH------GREVLQSAQP------------------GALV--TCGMLPLKRFRLSASPATGLVGMQENAFLSDFFGCVGFVPLTSHSHIRETMVRIMASPAPL-QQSAIGGA---------------CSEVGTMVRAP----CWNEA--SERNQLPMDASTCTFWCAIALGALAKGSPVESV 219
BLAST of mRNA_Ecto-sp13_S_contig10543.511.1 vs. uniprot
Match: A0A6H5JBJ1_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBJ1_9PHAE) HSP 1 Score: 104 bits (259), Expect = 2.280e-20 Identity = 81/254 (31.89%), Postives = 115/254 (45.28%), Query Frame = 3
Query: 279 IVLKKSCDFCFKRRKRCDGRAQRRCSFCVEKGRPECHYSMRSLPSMSSKTPTVVPISGEEDAARDDSPPTGLSLWAAAEVDDEDNADTGAQHTAKKGSGAAVGVTGLVLPFKRARLSASPATGLAGLLENELLGDFFGCLGFLSIATESIVRGAMVSVMRANNVLNQQGAITPARPXXXXXXXXXXXXXXTEEAPVSSVPTEETCWRNAVTTED-----AALPRDASTCILWCAIALGALVRGYPLPHVGGNEG 1025
+ +++SC C +++++CDG A CS C+ G +C YS R P + + R P G + + E+ + S A+ +G+ LP KR RLSASPATGL G+ EN L DFFGC+GFL + T S +RG MV +M + +Q GA S + E C +A+ TED + L S C WCA+ +GALV G P+ VG G
Sbjct: 16 LGMRRSCCECGRKKRKCDGMAP--CSRCLRSG-VQCTYSKRKPHQ---------PQTQHQHQRR----PRGPACMPSTEL-------------LRHSSSGALQASGM-LPLKRFRLSASPATGLVGMQENAFLSDFFGCVGFLPLTTPSHIRGEMVRMMTLSTAPHQLGA---------------------------SYDSPEQCQFDAILTEDGITTGSQLSTGPSACTFWCAVGVGALVNGSPVELVGNYSG 212
BLAST of mRNA_Ecto-sp13_S_contig10543.511.1 vs. uniprot
Match: D8LU09_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU09_ECTSI) HSP 1 Score: 93.2 bits (230), Expect = 8.710e-17 Identity = 59/137 (43.07%), Postives = 73/137 (53.28%), Query Frame = 3
Query: 600 VLPFKRARLSASPATGLAGLLENELLGDFFGCLGFLSIATESIVRGAMVSVMRANNVLNQQGAITPARPXXXXXXXXXXXXXXTEEAPVSSVPTEETCWRNAVTTEDAALPRDASTCILWCAIALGALVRGYPLPHV 1010
+LP KR RL+ASPATGL G+ EN L DFFGC+GF+ + + S +R MV +M + L QQ AI A V S+ CW A +E LP D STC WCAIALGAL +G P+ V
Sbjct: 1 MLPLKRFRLTASPATGLVGMQENAFLSDFFGCVGFVPLTSHSHIRETMVKIMASPAPL-QQSAIGGAF------------------GGVGSM-VRARCWNKA--SEKPQLPMDPSTCTFWCAIALGALAKGCPVESV 115 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10543.511.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10543.511.1 >prot_Ecto-sp13_S_contig10543.511.1 ID=prot_Ecto-sp13_S_contig10543.511.1|Name=mRNA_Ecto-sp13_S_contig10543.511.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=374bp MCGRNQALHKAQGQGTVTDNTPMNKPETRHRQHHPINKQAERGPSSTGNVback to top mRNA from alignment at Ecto-sp13_S_contig10543:1008..4479- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10543.511.1 ID=mRNA_Ecto-sp13_S_contig10543.511.1|Name=mRNA_Ecto-sp13_S_contig10543.511.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3472bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10543:1008..4479- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10543:1008..4479- >mRNA_Ecto-sp13_S_contig10543.511.1 ID=mRNA_Ecto-sp13_S_contig10543.511.1|Name=mRNA_Ecto-sp13_S_contig10543.511.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1122bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10543:1008..4479- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |