mRNA_Ecto-sp13_S_contig10541.509.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10541.509.1 vs. uniprot
Match: A0A6H5JI22_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI22_9PHAE) HSP 1 Score: 422 bits (1085), Expect = 3.870e-144 Identity = 218/255 (85.49%), Postives = 225/255 (88.24%), Query Frame = 1
Query: 70 VCVLAMDEHTMPFTYRSQQRSMLRXXXXXXXXXXXXXASCRCVLFAAVVLLLQLVGKGSAKSAGGAGGAHRHPTNLQRPPLLEAEAQGSLQATKEENKRRECHNTLGRLSQIASFAVPDDATKRHRLHMPRITGLRRPGCSSGGSDCHLVRDVKMAVAGAMAGAIATAALFPIDTAKTLRQANPKAFKGTRDALAHICRTRGPWAIYTGIPTAVVGAMPSSALYFGTYEAVKTRLMRVAANNFPAGPGGQREGEG 834
+C+L DE TMPF YRSQQRSMLR ASCRCV F AVVLLLQLVGKGSAKSAG AGGAHRHPTN QRPPL EAEA GSL+ATKEE KR+ECH+TLGRLSQ ASFAVPDDAT +HRLHMPRITGLRRP C SGG DCHLVRDVKMAVAGAMAGAIATAALFPIDTAKTLRQANPKAFKG+RDALAHICRTRGPWAIYTGIPTAVVGAMPSSALYFGTYEAVKTRLMRVAANNFPAGPGG REGEG
Sbjct: 1 MCILPTDEPTMPFMYRSQQRSMLRRREGRRHESNSSNASCRCVFFVAVVLLLQLVGKGSAKSAGEAGGAHRHPTNPQRPPLPEAEAYGSLEATKEERKRKECHSTLGRLSQTASFAVPDDATTQHRLHMPRITGLRRPDCLSGGLDCHLVRDVKMAVAGAMAGAIATAALFPIDTAKTLRQANPKAFKGSRDALAHICRTRGPWAIYTGIPTAVVGAMPSSALYFGTYEAVKTRLMRVAANNFPAGPGGPREGEG 255
BLAST of mRNA_Ecto-sp13_S_contig10541.509.1 vs. uniprot
Match: D7G8X0_ECTSI (Mitochondrial carrier protein-like n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8X0_ECTSI) HSP 1 Score: 243 bits (619), Expect = 2.060e-75 Identity = 123/127 (96.85%), Postives = 123/127 (96.85%), Query Frame = 1
Query: 454 MPRITGLRRPGCSSGGSDCHLVRDVKMAVAGAMAGAIATAALFPIDTAKTLRQANPKAFKGTRDALAHICRTRGPWAIYTGIPTAVVGAMPSSALYFGTYEAVKTRLMRVAANNFPAGPGGQREGEG 834
MPRITGLRR C SGGSDCHLVRDVKMAVAGAMAGAIATAALFPIDTAKTLRQANPKAFKGTRDALAHICRTRGPWAIYTGIPTAVVGAMPSSALYFGTYEAVKTRLMRVAANNFPAGPGG REGEG
Sbjct: 1 MPRITGLRRSDCLSGGSDCHLVRDVKMAVAGAMAGAIATAALFPIDTAKTLRQANPKAFKGTRDALAHICRTRGPWAIYTGIPTAVVGAMPSSALYFGTYEAVKTRLMRVAANNFPAGPGGPREGEG 127
BLAST of mRNA_Ecto-sp13_S_contig10541.509.1 vs. uniprot
Match: A0A836CFD2_9STRA (Mitochondrial carrier protein-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFD2_9STRA) HSP 1 Score: 119 bits (298), Expect = 2.920e-28 Identity = 60/92 (65.22%), Postives = 72/92 (78.26%), Query Frame = 1
Query: 532 MAVAGAMAGAIATAALFPIDTAKTLRQANPKAFKGTRDALAHICRTRGPWAIYTGIPTAVVGAMPSSALYFGTYEAVKTRLMRVAANNFPAG 807
MA+AGAMAGAI+T L PIDTAKTLRQ+NP+AFKGT AL+H+ +T GP +IY G+ AVVG+MPSSALYFG YE+VK RL R A + G
Sbjct: 1 MALAGAMAGAISTVTLHPIDTAKTLRQSNPQAFKGTIQALSHMLKTHGPGSIYAGVGAAVVGSMPSSALYFGAYESVKARLTRAAGRRWGGG 92
BLAST of mRNA_Ecto-sp13_S_contig10541.509.1 vs. uniprot
Match: A0A7S2STS4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2STS4_9STRA) HSP 1 Score: 92.0 bits (227), Expect = 7.060e-18 Identity = 47/89 (52.81%), Postives = 61/89 (68.54%), Query Frame = 1
Query: 526 VKMAVAGAMAGAIATAALFPIDTAKTLRQANPKAFKGTRDALAHICRTRGPWAIYTGIPTAVVGAMPSSALYFGTYEAVKTRLMRVAAN 792
++ A+AGA+AG + L P+DT KTLRQ +P+ +K T AL+ RTRG A+Y G+ A +GAMPSSALYFG Y+ VK RL R AN
Sbjct: 30 LRSALAGAIAGGVTNTILHPLDTCKTLRQRHPQQYKSTLAALSSTLRTRGIGALYRGVIPAAIGAMPSSALYFGFYDIVKRRLTRFVAN 118
BLAST of mRNA_Ecto-sp13_S_contig10541.509.1 vs. uniprot
Match: A0A7S2DQE7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DQE7_9STRA) HSP 1 Score: 87.8 bits (216), Expect = 7.570e-17 Identity = 44/88 (50.00%), Postives = 59/88 (67.05%), Query Frame = 1
Query: 523 DVKMAVAGAMAGAIATAALFPIDTAKTLRQANPKAFKGTRDALAHICRTRGPWAIYTGIPTAVVGAMPSSALYFGTYEAVKTRLMRVA 786
D++ A+AG +AG+ T L P+DTAK LRQ NP + GT AL R RG +Y+G+ + +G++PSSALYFGTYE VK RL +A
Sbjct: 23 DIRSALAGGLAGSFTTGILHPLDTAKVLRQKNPTQYAGTLQALVVTARERGIRPLYSGLWASALGSLPSSALYFGTYECVKRRLYALA 110
BLAST of mRNA_Ecto-sp13_S_contig10541.509.1 vs. uniprot
Match: A0A2V3J0Y3_9FLOR (Protein MITOFERRINLIKE 1, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J0Y3_9FLOR) HSP 1 Score: 87.4 bits (215), Expect = 2.890e-16 Identity = 44/90 (48.89%), Postives = 60/90 (66.67%), Query Frame = 1
Query: 529 KMAVAGAMAGAIATAALFPIDTAKTLRQANPKAFKGTRDALAHICRTRGPWAIYTGIPTAVVGAMPSSALYFGTYEAVKTRLMRVAANNF 798
++A AG MAG + L P+DT KT+RQA+P F+G L I RTRGP+A+Y GI A++G+ SSALYFG YE VK L +++ +F
Sbjct: 21 RLAAAGGMAGMLTNTLLHPLDTVKTVRQADPTHFRGMAPTLLKIIRTRGPFALYAGIVPALIGSAFSSALYFGAYEMVKGALAQMSPYSF 110
BLAST of mRNA_Ecto-sp13_S_contig10541.509.1 vs. uniprot
Match: A0A7R9WVA4_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WVA4_9STRA) HSP 1 Score: 87.8 bits (216), Expect = 5.910e-16 Identity = 46/88 (52.27%), Postives = 60/88 (68.18%), Query Frame = 1
Query: 529 KMAVAGAMAGAIATAALFPIDTAKTLRQANPKAFKGTRDALAHICRTRGPWAI---YTGIPTAVVGAMPSSALYFGTYEAVKTRLMRV 783
++A+AG +AGA T+AL+PID+AKTLRQ+NP + R A + ++ W I Y GI A VGA+PSSALYFG YE+VKT L R
Sbjct: 160 RVALAGGLAGATGTSALYPIDSAKTLRQSNPSMYSSVRHAFLSLIKSGNRWHISKAYKGIIPAAVGAIPSSALYFGAYESVKTALQRA 247
BLAST of mRNA_Ecto-sp13_S_contig10541.509.1 vs. uniprot
Match: A0A7S3LH63_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LH63_9STRA) HSP 1 Score: 85.9 bits (211), Expect = 1.100e-15 Identity = 54/127 (42.52%), Postives = 72/127 (56.69%), Query Frame = 1
Query: 397 SQIASFAVPDDATKRHRLHMPRITGLRRP-GCSSGGSDCHLVRDVKMAVAGAMAGAIATAALFPIDTAKTLRQANPKAFKGTRDALAHICRTRGPWAI---YTGIPTAVVGAMPSSALYFGTYEAVK 765
+QI A DA HR + G ++ G GS + +R + +AG +AGA T ALFP+D+AKTLRQ++P +K R AL + G W I Y G+ A +GA+PSSALYFG YE VK
Sbjct: 113 NQIKDTAFHTDAAHCHRQFLRTTFGRKKNRGRPQQGSFSYAIR---VGLAGGIAGAAGTLALFPVDSAKTLRQSSPSLYKNVRQALGKLVVEDGKWHIGRAYCGVIPATLGAIPSSALYFGAYECVK 236
BLAST of mRNA_Ecto-sp13_S_contig10541.509.1 vs. uniprot
Match: A0A7S3LFM8_9STRA (Hypothetical protein n=2 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LFM8_9STRA) HSP 1 Score: 85.9 bits (211), Expect = 2.710e-15 Identity = 54/127 (42.52%), Postives = 72/127 (56.69%), Query Frame = 1
Query: 397 SQIASFAVPDDATKRHRLHMPRITGLRRP-GCSSGGSDCHLVRDVKMAVAGAMAGAIATAALFPIDTAKTLRQANPKAFKGTRDALAHICRTRGPWAI---YTGIPTAVVGAMPSSALYFGTYEAVK 765
+QI A DA HR + G ++ G GS + +R + +AG +AGA T ALFP+D+AKTLRQ++P +K R AL + G W I Y G+ A +GA+PSSALYFG YE VK
Sbjct: 113 NQIKDTAFHTDAAHCHRQFLRTTFGRKKNRGRPQQGSFSYAIR---VGLAGGIAGAAGTLALFPVDSAKTLRQSSPSLYKNVRQALGKLVVEDGKWHIGRAYCGVIPATLGAIPSSALYFGAYECVK 236
BLAST of mRNA_Ecto-sp13_S_contig10541.509.1 vs. uniprot
Match: A0A448Z9E8_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z9E8_9STRA) HSP 1 Score: 82.8 bits (203), Expect = 2.740e-14 Identity = 43/87 (49.43%), Postives = 62/87 (71.26%), Query Frame = 1
Query: 526 VKMAVAGAMAGAIATAALFPIDTAKTLRQANPKAFKGTRDALAHICRTRGPWA-IYTGIPTAVVGAMPSSALYFGTYEAVKTRLMRV 783
+++A+AG +AGA +A L+PID+AKTLRQ+NP A+ RDAL + +++ +Y GI A +GA+PSSALYFG YE+ K L R+
Sbjct: 116 LRIALAGGLAGATGSAVLYPIDSAKTLRQSNPTAYSSVRDALWTMLKSKNALRRVYRGILPAALGAIPSSALYFGAYESSKVTLKRL 202 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10541.509.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10541.509.1 >prot_Ecto-sp13_S_contig10541.509.1 ID=prot_Ecto-sp13_S_contig10541.509.1|Name=mRNA_Ecto-sp13_S_contig10541.509.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=281bp GYRRLSPLPECGQIIVVLCASFSVCVLAMDEHTMPFTYRSQQRSMLRRREback to top mRNA from alignment at Ecto-sp13_S_contig10541:1404..4686+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10541.509.1 ID=mRNA_Ecto-sp13_S_contig10541.509.1|Name=mRNA_Ecto-sp13_S_contig10541.509.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3283bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10541:1404..4686+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10541:1404..4686+ >mRNA_Ecto-sp13_S_contig10541.509.1 ID=mRNA_Ecto-sp13_S_contig10541.509.1|Name=mRNA_Ecto-sp13_S_contig10541.509.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=843bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10541:1404..4686+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |