mRNA_Ecto-sp13_S_contig10534.504.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10534.504.1
Unique NamemRNA_Ecto-sp13_S_contig10534.504.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig10534.504.1 vs. uniprot
Match: A0A6H5L6J8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6J8_9PHAE)

HSP 1 Score: 242 bits (617), Expect = 3.480e-72
Identity = 152/174 (87.36%), Postives = 159/174 (91.38%), Query Frame = 1
Query:  232 NDGYLSINALVDGGAAIEARDNKGRTPLHLASSSHRCAEMKAXXXXXXXXXXXXXXXXXXXXXAVDEGCDAANARSPVDLLLRWGADETARDDGDQXXXXXXXXXGPSVGNSPVELWEYRVEVTDTTYANAAPVQKLLDDARKDRTWRRRGWLVMCRAFPDKVRLRADSGGSNA 753
            +DGYL INALVDGGAAIE RDNKGRTPLHLASSSHR  EMK    XXXXXXXXXXXXXXXXXXAVDEG DAA+A SPVDLLLRWGADE+A+DDGDQXXXXXXXXXGP+VGNSP E WEYRVEVT TTYA+ APVQKLLDDA+KDRTWRRRGWLVMCRAFPDKVRLRADSGGS A
Sbjct:  480 HDGYLLINALVDGGAAIEDRDNKGRTPLHLASSSHRFVEMKVLLRXXXXXXXXXXXXXXXXXXAVDEGYDAADACSPVDLLLRWGADESAKDDGDQXXXXXXXXXGPNVGNSPAEPWEYRVEVTHTTYADVAPVQKLLDDAQKDRTWRRRGWLVMCRAFPDKVRLRADSGGSIA 653          
BLAST of mRNA_Ecto-sp13_S_contig10534.504.1 vs. uniprot
Match: D7FJ34_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ34_ECTSI)

HSP 1 Score: 206 bits (524), Expect = 2.590e-57
Identity = 141/183 (77.05%), Postives = 150/183 (81.97%), Query Frame = 1
Query:  235 DGYLSINALVDGGAAIEARDNKGRTPLHLASSSHRCAEMKAXXXXXXXXXXXXXXXXXXXXXAVDEGCDAANARSPVDLLLRWGADETARDDGDQXXXXXXXXXGPSVGNSPVELWEYRVEVTDTTYANAAPVQKLLDDARKDRTWRRRGWLVMCRAFPDKVRLRADSGGSNAKPGRDVRVRG 783
            DGYLSINALVDG                LAS+SH C  MKAXXXXXXXXXXXXXXXXXXXXXAVDEG  A + RSPVDLLLRWGADETA+DD   XXXXXXXXXGP+VGNSP ELWEYRV+VT +TY  AAPVQKLLDDA+KDRTWRRRGWLVMCRAFPD+VRLRAD+  SNAK GRDVRVRG
Sbjct:  708 DGYLSINALVDGXXXXXXXXXXXXXXXXLASASHSCTGMKAXXXXXXXXXXXXXXXXXXXXXAVDEGYYATDVRSPVDLLLRWGADETAKDDXXXXXXXXXXXXGPNVGNSPAELWEYRVKVTCSTYGVAAPVQKLLDDAQKDRTWRRRGWLVMCRAFPDRVRLRADTERSNAKTGRDVRVRG 890          
BLAST of mRNA_Ecto-sp13_S_contig10534.504.1 vs. uniprot
Match: A0A6H5JW93_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW93_9PHAE)

HSP 1 Score: 172 bits (437), Expect = 1.230e-45
Identity = 126/262 (48.09%), Postives = 149/262 (56.87%), Query Frame = 1
Query:    4 NGGLLHQAAEGGSVSCVEALLAGGADIALRDEAGRTALHVAALHSDQVXXXXXXXXXXXXXXXXXXXXXXXXXXXANDGYLSINALVDGGAAIEARDN--KGRTPLHLASSSHRCAEMKAXXXXXXXXXXXXXXXXXXXXXAVDEGCDAANARSPVDLLLRWGADETARDDGDQXXXXXXXXXGPSVGNSPVELWEYRVEVTDTTYANAAPVQKLLDDARKDRTWRRRGWLVMCRAFPDKVRLRADSGGSNAKPGRDVRVRG 783
            N GL+H+AA+G S SCVE  LAG ADI LRD+   TALH AA HS  +                                  +  L++ GA  ++RD+   GR PL +A+          XXXXXXXXXXXXXXX       VD   D A+ R+ VDLLLRWGADE A+DDGD                SP ELWEYRV VTDTT+A   P+ KLL D +KDRTWRRRGWLV+C AF  KVRL+AD+GG+NA  GR VRV G
Sbjct:  526 NRGLIHEAAQGSSASCVELNLAGSADINLRDDEESTALHAAAGHSTSI----------------------------------VEKLLEHGADPDSRDSDGNGRNPLLVAAYXXXXXXXXXXXXXXXXXXXXXXXXRSPLHLGVDGWIDLADVRALVDLLLRWGADEIAKDDGDDSQD----------SRSPGELWEYRVGVTDTTHAEVPPIGKLLKDTQKDRTWRRRGWLVLCHAFTYKVRLKADNGGANAGTGRSVRVGG 743          
BLAST of mRNA_Ecto-sp13_S_contig10534.504.1 vs. uniprot
Match: A0A6H5JN15_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN15_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 3.080e-23
Identity = 64/185 (34.59%), Postives = 93/185 (50.27%), Query Frame = 1
Query:  232 NDGYLSINALVDGGAAIEARDNKGRTPLHLASSSHRCAEMKAXXXXXXXXXXXXXXXXXXXXXAVDEGCDAANAR--SPVDLLLRWGADETARDDGDQXXXXXXXXXGPSVGNSPVELWEYRVEVTDTTYANAAPVQKLLDDARKDRTWRRRGWLVMCRAFPDKVRLRADSGGSNAKPGRDVRVR 780
            N+  + I AL   G +   +DN GRTP  LA+  H  + M+                      +  + CD+ ++   + +DLLLRWGADE A D               S+GN+P+ +W         ++AN   V+K+   A +D+ WR+RGWLV+CRAFP+ VRL+ADS G+    GR VR R
Sbjct:  635 NNNGVCIEALTSAGTSTSIKDNDGRTPFQLATICHSRSVMRMLLR------------------SAHDRCDSRDSAMATTIDLLLRWGADENAVD---------------SLGNTPLTVWRENESTYTLSWANKQSVKKIFKRAPRDKRWRQRGWLVLCRAFPNSVRLKADSDGTCPAAGRSVRAR 786          
BLAST of mRNA_Ecto-sp13_S_contig10534.504.1 vs. uniprot
Match: D7G751_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G751_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 3.710e-17
Identity = 48/114 (42.11%), Postives = 68/114 (59.65%), Query Frame = 1
Query:  439 DAANARSPVDLLLRWGADETARDDGDQXXXXXXXXXGPSVGNSPVELWEYRVEVTDTTYANAAPVQKLLDDARKDRTWRRRGWLVMCRAFPDKVRLRADSGGSNAKPGRDVRVR 780
            D+A A + +DLLLRWGADE A D               S G +PV +W     +   ++AN   V+K+   A +D+ WRRRGWLV+CRAFP++VRL+ D+ G+  + GR +R R
Sbjct:  747 DSAMATT-MDLLLRWGADENAVD---------------SAGRTPVTVWRENESMYTLSWANKQSVKKMFQRAPRDKAWRRRGWLVLCRAFPNRVRLKEDNAGTCPRAGRSLRAR 844          
BLAST of mRNA_Ecto-sp13_S_contig10534.504.1 vs. uniprot
Match: A0A6H5L7B7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7B7_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 7.960e-15
Identity = 91/214 (42.52%), Postives = 107/214 (50.00%), Query Frame = 1
Query:   34 GGSVSCVEALLAGGADIALRDEAGRTALHVAALHSDQVXXXXXXXXXXXXXXXXXXXXXXXXXXXANDGYLSINALVDGGAAIEARDNKGRTPLHLASSSHRCAEMKAXXXXXXXXXXXXXXXXXXXXXAVDEGCDAANARSPVDLLLRWGADETARDDGDQXXXXXXXXXGPSVGNSPVELWEYRVEVTDTTYANAAPVQKLLDDARKDRTWR 675
            G S   VE LL  GA++  RD   RT LH  A+                                 N  Y SI+ALVDGGAAIE  DN GRT LHLASS HRCA MKAXXXXXXXXXXXXXXXXXXXXX V                      ET++D              P VG +PV++W    E+     ++AAP+++LL  A+KDRTWR
Sbjct:  551 GDSAEVVEILLQHGAEVESRDMDDRTPLHKVAM-------------------------------TYNKRYTSIDALVDGGAAIETPDNFGRTILHLASSKHRCAAMKAXXXXXXXXXXXXXXXXXXXXXXVSY--------------------ETSKD----TVEYEDVEDEPYVGRTPVDVWRALAEMNYAWASSAAPIRRLLVGAQKDRTWR 709          
BLAST of mRNA_Ecto-sp13_S_contig10534.504.1 vs. uniprot
Match: A0A6H5K8F3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8F3_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 3.680e-14
Identity = 55/117 (47.01%), Postives = 62/117 (52.99%), Query Frame = 1
Query:   10 GLLHQAAEGGSVSCVEALLAGGADIALRDEAGRTALHVAALHSDQVXXXXXXXXXXXXXXXXXXXXXXXXXXXA-NDGYLSINALVDGGAAIEARDNKGRTPLHLASSSHRCAEMKA 357
            G LH AAEGG+VS VE  LA G DI  R  AG TAL VAA  S +V                                + S++ALVDGGAAI+A DN G T LH+AS  HRCAEMKA
Sbjct:  594 GGLHAAAEGGNVSRVELFLADGVDINFRVNAGSTALRVAARRSSEVVEKLLQHGADTDARNVSDRTPLHEATLTYKKEHNSVDALVDGGAAIDAWDNMGNTSLHIASLKHRCAEMKA 710          
BLAST of mRNA_Ecto-sp13_S_contig10534.504.1 vs. uniprot
Match: A0A6H5JN84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN84_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 7.720e-13
Identity = 42/106 (39.62%), Postives = 58/106 (54.72%), Query Frame = 1
Query:  463 VDLLLRWGADETARDDGDQXXXXXXXXXGPSVGNSPVELWEYRVEVTDTTYANAAPVQKLLDDARKDRTWRRRGWLVMCRAFPDKVRLRADSGGSNAKPGRDVRVR 780
            +DLLLRWGADE A +               S G +PV +W     V     A+   V K+     +D+ WRRRGWLV+CRA P++VRL+AD  G+ +  G+ +R R
Sbjct:  705 IDLLLRWGADENAVN---------------SAGRTPVTVWRRNGYVHRLPAASRTSVPKMFHWIPRDKAWRRRGWLVLCRALPNRVRLKADDAGTCSGAGQSLRAR 795          
BLAST of mRNA_Ecto-sp13_S_contig10534.504.1 vs. uniprot
Match: D7FHH2_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHH2_ECTSI)

HSP 1 Score: 67.4 bits (163), Expect = 4.560e-9
Identity = 32/76 (42.11%), Postives = 47/76 (61.84%), Query Frame = 1
Query:  553 SVGNSPVELWEYRVEVTDTTYANAAPVQKLLDDARKDRTWRRRGWLVMCRAFPDKVRLRADSGGSNAKPGRDVRVR 780
            S G +P  +W     + + ++     V+K+ + A  D+ WRRRGWLV+CRAFP +VRL+AD+ G+    GR VR R
Sbjct:  775 STGITPAIVWRDNESMDNLSWEKWQSVRKMFEWAPSDKAWRRRGWLVLCRAFPHRVRLKADNVGACPGAGRSVRAR 850          
BLAST of mRNA_Ecto-sp13_S_contig10534.504.1 vs. uniprot
Match: A0A6H5KNA2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNA2_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 2.710e-8
Identity = 44/112 (39.29%), Postives = 54/112 (48.21%), Query Frame = 1
Query:  421 AVDEGCDAANARSPVDLLLRWGADETARDDGDQXXXXXXXXXGPSVGNSPVELWEYRVEVTDTTYANAAPVQKLLDDARKDRTWRRRGWLVMCRAFPDKVRLRADSGGSNAK 756
            A+   C   N  +  DLLL WGADETA D  D           P +   P E     + +            KLL+ A KDRTWRRRG LVMCRA PD++ L AD   + A+
Sbjct:   22 ALHTACHVVNPDA-ADLLLTWGADETAADWNDAAVSAVI----PRIDEPPEENRPAILRLA-----------KLLEFADKDRTWRRRGLLVMCRAHPDRLLLAADVSNNTAE 117          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10534.504.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L6J8_9PHAE3.480e-7287.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FJ34_ECTSI2.590e-5777.05Ankyrin repeat protein n=2 Tax=Ectocarpus siliculo... [more]
A0A6H5JW93_9PHAE1.230e-4548.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN15_9PHAE3.080e-2334.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G751_ECTSI3.710e-1742.11Ankyrin repeat protein n=2 Tax=Ectocarpus siliculo... [more]
A0A6H5L7B7_9PHAE7.960e-1542.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K8F3_9PHAE3.680e-1447.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN84_9PHAE7.720e-1339.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FHH2_ECTSI4.560e-942.11Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5KNA2_9PHAE2.710e-839.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10534contigEcto-sp13_S_contig10534:293..1075 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score236.9
Seed ortholog evalue1.1e-59
Seed eggNOG ortholog2880.D7FGP5
Model size784
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Cds size783
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462537.006771-CDS-Ecto-sp13_S_contig10534:292..10751681462537.006771-CDS-Ecto-sp13_S_contig10534:292..1075Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10534 293..1075 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10534.504.1prot_Ecto-sp13_S_contig10534.504.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10534 293..1075 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10534.504.1

>prot_Ecto-sp13_S_contig10534.504.1 ID=prot_Ecto-sp13_S_contig10534.504.1|Name=mRNA_Ecto-sp13_S_contig10534.504.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=261bp
RNGGLLHQAAEGGSVSCVEALLAGGADIALRDEAGRTALHVAALHSDQVV
EKLLHHGADTESRDVGNHTALHKAAIANDGYLSINALVDGGAAIEARDNK
GRTPLHLASSSHRCAEMKALLRSGADIRARDKSGRSPLHLAVDEGCDAAN
ARSPVDLLLRWGADETARDDGDQDDDDDDDDDGPSVGNSPVELWEYRVEV
TDTTYANAAPVQKLLDDARKDRTWRRRGWLVMCRAFPDKVRLRADSGGSN
AKPGRDVRVRG
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mRNA from alignment at Ecto-sp13_S_contig10534:293..1075+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10534.504.1 ID=mRNA_Ecto-sp13_S_contig10534.504.1|Name=mRNA_Ecto-sp13_S_contig10534.504.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=783bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10534:293..1075+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGAAACGGAGGACTCCTTCACCAGGCTGCCGAAGGAGGCAGCGTTTCCTG CGTGGAAGCACTTCTCGCCGGTGGTGCCGACATCGCTCTTCGTGACGAGG CGGGACGTACGGCGCTGCACGTGGCTGCGCTTCATTCCGACCAGGTCGTG GAAAAGCTGCTCCATCACGGCGCTGACACAGAGTCTCGAGACGTAGGTAA TCACACCGCGCTGCACAAGGCCGCCATTGCCAATGACGGGTACCTTTCGA TCAACGCCCTTGTTGACGGGGGTGCTGCCATCGAGGCCCGGGATAACAAA GGTAGAACTCCCCTTCATCTCGCTTCTTCGTCGCACAGATGCGCAGAAAT GAAGGCCCTTCTTCGGAGCGGTGCTGACATCCGTGCGAGAGACAAGAGTG GACGCTCACCGCTACACCTTGCGGTGGATGAAGGGTGCGACGCCGCCAAT GCGCGCTCGCCTGTGGACCTGCTATTGAGATGGGGGGCAGATGAAACCGC CAGAGACGACGGCGACCAAGACGATGACGACGACGACGACGACGATGGCC CAAGCGTCGGCAACAGCCCTGTAGAGCTGTGGGAGTATCGCGTTGAGGTC ACGGACACAACATACGCCAACGCGGCTCCCGTTCAAAAGCTTTTGGATGA TGCCCGGAAGGACAGGACGTGGCGGCGACGTGGCTGGCTTGTCATGTGCC GTGCTTTCCCCGACAAGGTGCGGCTGAGAGCGGATAGCGGAGGATCGAAC GCTAAACCGGGGAGAGATGTTCGGGTGCGCGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10534:293..1075+

>mRNA_Ecto-sp13_S_contig10534.504.1 ID=mRNA_Ecto-sp13_S_contig10534.504.1|Name=mRNA_Ecto-sp13_S_contig10534.504.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=783bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10534:293..1075+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGAAACGGAGGACTCCTTCACCAGGCTGCCGAAGGAGGCAGCGTTTCCTG
CGTGGAAGCACTTCTCGCCGGTGGTGCCGACATCGCTCTTCGTGACGAGG
CGGGACGTACGGCGCTGCACGTGGCTGCGCTTCATTCCGACCAGGTCGTG
GAAAAGCTGCTCCATCACGGCGCTGACACAGAGTCTCGAGACGTAGGTAA
TCACACCGCGCTGCACAAGGCCGCCATTGCCAATGACGGGTACCTTTCGA
TCAACGCCCTTGTTGACGGGGGTGCTGCCATCGAGGCCCGGGATAACAAA
GGTAGAACTCCCCTTCATCTCGCTTCTTCGTCGCACAGATGCGCAGAAAT
GAAGGCCCTTCTTCGGAGCGGTGCTGACATCCGTGCGAGAGACAAGAGTG
GACGCTCACCGCTACACCTTGCGGTGGATGAAGGGTGCGACGCCGCCAAT
GCGCGCTCGCCTGTGGACCTGCTATTGAGATGGGGGGCAGATGAAACCGC
CAGAGACGACGGCGACCAAGACGATGACGACGACGACGACGACGATGGCC
CAAGCGTCGGCAACAGCCCTGTAGAGCTGTGGGAGTATCGCGTTGAGGTC
ACGGACACAACATACGCCAACGCGGCTCCCGTTCAAAAGCTTTTGGATGA
TGCCCGGAAGGACAGGACGTGGCGGCGACGTGGCTGGCTTGTCATGTGCC
GTGCTTTCCCCGACAAGGTGCGGCTGAGAGCGGATAGCGGAGGATCGAAC
GCTAAACCGGGGAGAGATGTTCGGGTGCGCGGC
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