mRNA_Ecto-sp13_S_contig10510.489.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig10510.489.1
Unique Name	mRNA_Ecto-sp13_S_contig10510.489.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

[Close]

BLAST of mRNA_Ecto-sp13_S_contig10510.489.1 vs. uniprot
Match: A0A7S2XQ82_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XQ82_9STRA)

HSP 1 Score: 239 bits (611), Expect = 1.490e-79
Identity = 111/113 (98.23%), Postives = 112/113 (99.12%), Query Frame = 1

Query:    1 MMTKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGM 339
            MMTKCDPRHGKYMACCLMYRGDVVPKDVNAAVAT+KTKRTIQFVDWCPTGFKCGINYQPPTVVP GDLARVQRAVCMVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGM
Sbjct:   18 MMTKCDPRHGKYMACCLMYRGDVVPKDVNAAVATVKTKRTIQFVDWCPTGFKCGINYQPPTVVPDGDLARVQRAVCMVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGM 130

[Close]

BLAST of mRNA_Ecto-sp13_S_contig10510.489.1 vs. uniprot
Match: A0JKF1_QUERO (A-tubulin (Fragment) n=1 Tax=Quercus robur TaxID=38942 RepID=A0JKF1_QUERO)

HSP 1 Score: 232 bits (591), Expect = 1.010e-76
Identity = 104/113 (92.04%), Postives = 110/113 (97.35%), Query Frame = 1

Query:    1 MMTKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGM 339
            MM KCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLA+VQRAVCM++N+T++AE  SRIDHKFDLMYAKRAFVHWYVGEGM
Sbjct:   39 MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGM 151

[Close]

BLAST of mRNA_Ecto-sp13_S_contig10510.489.1 vs. uniprot
Match: A0A7J8SZW8_GOSDV (Tubulin_C domain-containing protein n=2 Tax=rosids TaxID=71275 RepID=A0A7J8SZW8_GOSDV)

HSP 1 Score: 231 bits (590), Expect = 1.290e-76
Identity = 103/113 (91.15%), Postives = 110/113 (97.35%), Query Frame = 1

Query:    1 MMTKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGM 339
            MM KCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLA+VQRAVCM++N+T++AE  SRIDHKFDLMYAKRAF+HWYVGEGM
Sbjct:    1 MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFIHWYVGEGM 113

[Close]

BLAST of mRNA_Ecto-sp13_S_contig10510.489.1 vs. uniprot
Match: E8NHQ9_LEIMU (Uncharacterized protein LmxM_13_0290_1 n=10 Tax=cellular organisms TaxID=131567 RepID=E8NHQ9_LEIMU)

HSP 1 Score: 231 bits (590), Expect = 1.340e-76
Identity = 103/113 (91.15%), Postives = 111/113 (98.23%), Query Frame = 1

Query:    1 MMTKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGM 339
            M+TKCDPRHGKYM+CCLMYRGDVVPKDVNAA+ATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLA+VQRAVCM+AN+TAIAE  +RIDHKFDLMY+KRAFVHWYVGEGM
Sbjct:    1 MLTKCDPRHGKYMSCCLMYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMIANSTAIAEVFARIDHKFDLMYSKRAFVHWYVGEGM 113

[Close]

BLAST of mRNA_Ecto-sp13_S_contig10510.489.1 vs. uniprot
Match: A0A7S2A4A3_9STRA (Tubulin alpha chain n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2A4A3_9STRA)

HSP 1 Score: 240 bits (612), Expect = 1.890e-76
Identity = 110/113 (97.35%), Postives = 113/113 (100.00%), Query Frame = 1

Query:    1 MMTKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGM 339
            MMT+CDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLA+VQRAVCMVANTTA+AEALSRIDHKFDLMYAKRAFVHWYVGEGM
Sbjct:  258 MMTRCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMVANTTAVAEALSRIDHKFDLMYAKRAFVHWYVGEGM 370

[Close]

BLAST of mRNA_Ecto-sp13_S_contig10510.489.1 vs. uniprot
Match: A0A7S9YUW8_IRIGE (Beta-tubulin (Fragment) n=1 Tax=Iris germanica TaxID=34205 RepID=A0A7S9YUW8_IRIGE)

HSP 1 Score: 231 bits (588), Expect = 2.980e-76
Identity = 103/113 (91.15%), Postives = 108/113 (95.58%), Query Frame = 1

Query:    1 MMTKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGM 339
            MM KCDPRHGKYMACCLMYRGDVVPKDVNAAV TIKTKRT+QFVDWCPTGFKCGINYQPPTVVPGGDLA+VQRAVCM++N TA+AE  SRIDHKFDLMYAKRAFVHWYVGEGM
Sbjct:    5 MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGM 117

[Close]

BLAST of mRNA_Ecto-sp13_S_contig10510.489.1 vs. uniprot
Match: TBA2_PELFA (Tubulin alpha-2 chain n=45 Tax=cellular organisms TaxID=131567 RepID=TBA2_PELFA)

HSP 1 Score: 241 bits (614), Expect = 3.120e-76
Identity = 112/113 (99.12%), Postives = 112/113 (99.12%), Query Frame = 1

Query:    1 MMTKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGM 339
            MMT CDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGM
Sbjct:  301 MMTNCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGM 413

[Close]

BLAST of mRNA_Ecto-sp13_S_contig10510.489.1 vs. uniprot
Match: A9LGN1_9STRA (Tubulin alpha chain (Fragment) n=6 Tax=Chrysophyceae TaxID=2825 RepID=A9LGN1_9STRA)

HSP 1 Score: 237 bits (605), Expect = 5.520e-76
Identity = 108/112 (96.43%), Postives = 112/112 (100.00%), Query Frame = 1

Query:    1 MMTKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEG 336
            M+TKCDPRHGKYMACC+MYRGDVVPKDVNAAVATIKTKRT+QFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMV+NTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEG
Sbjct:  250 MLTKCDPRHGKYMACCMMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVSNTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEG 361

[Close]

BLAST of mRNA_Ecto-sp13_S_contig10510.489.1 vs. uniprot
Match: A0A7C9EM32_OPUST (Tubulin_C domain-containing protein n=2 Tax=Pentapetalae TaxID=1437201 RepID=A0A7C9EM32_OPUST)

HSP 1 Score: 230 bits (587), Expect = 5.720e-76
Identity = 103/113 (91.15%), Postives = 110/113 (97.35%), Query Frame = 1

Query:    1 MMTKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGM 339
            MM KCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPP+VVPGGDLA+VQRAVCM++N+T++AE  SRIDHKFDLMYAKRAFVHWYVGEGM
Sbjct:   13 MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGM 125

[Close]

BLAST of mRNA_Ecto-sp13_S_contig10510.489.1 vs. uniprot
Match: C0SK39_RHDSA (Tubulin alpha chain (Fragment) n=1 Tax=Rhodomonas salina TaxID=52970 RepID=C0SK39_RHDSA)

HSP 1 Score: 234 bits (598), Expect = 5.820e-76
Identity = 106/113 (93.81%), Postives = 111/113 (98.23%), Query Frame = 1

Query:    1 MMTKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGM 339
            MMTKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLA+VQRAVCMV+N+TA+AE  SR+DHKFDLMYAKRAFVHWYVGEGM
Sbjct:  170 MMTKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMVSNSTAVAEVFSRLDHKFDLMYAKRAFVHWYVGEGM 282

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig10510.489.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig10510.489.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A7S2XQ82_9STRA	1.490e-79	98.23	Hypothetical protein n=1 Tax=Attheya septentrional...	[more]
A0JKF1_QUERO	1.010e-76	92.04	A-tubulin (Fragment) n=1 Tax=Quercus robur TaxID=3...	[more]
A0A7J8SZW8_GOSDV	1.290e-76	91.15	Tubulin_C domain-containing protein n=2 Tax=rosids...	[more]
E8NHQ9_LEIMU	1.340e-76	91.15	Uncharacterized protein LmxM_13_0290_1 n=10 Tax=ce...	[more]
A0A7S2A4A3_9STRA	1.890e-76	97.35	Tubulin alpha chain n=1 Tax=Ditylum brightwellii T...	[more]
A0A7S9YUW8_IRIGE	2.980e-76	91.15	Beta-tubulin (Fragment) n=1 Tax=Iris germanica Tax...	[more]
TBA2_PELFA	3.120e-76	99.12	Tubulin alpha-2 chain n=45 Tax=cellular organisms ...	[more]
A9LGN1_9STRA	5.520e-76	96.43	Tubulin alpha chain (Fragment) n=6 Tax=Chrysophyce...	[more]
A0A7C9EM32_OPUST	5.720e-76	91.15	Tubulin_C domain-containing protein n=2 Tax=Pentap...	[more]
C0SK39_RHDSA	5.820e-76	93.81	Tubulin alpha chain (Fragment) n=1 Tax=Rhodomonas ...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig10510	contig	Ecto-sp13_S_contig10510:163..1145 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	0
Start	1
Seed ortholog score	245.7
Seed ortholog evalue	1e-62
Seed eggNOG ortholog	2880.D7G923
Model size	339
KEGG ko	ko:K07374
KEGG Pathway	ko04145,ko04210,ko04530,ko04540,ko05130,map04145,map04210,map04530,map04540,map05130
Hectar predicted targeting category	other localisation
Exons	2
EggNOG free text desc.	structural constituent of cytoskeleton
EggNOG OGs	COG5023@1,KOG1376@2759
Cds size	339
COG Functional cat.	Z
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko03019,ko03036,ko04147,ko04812

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681462535.9109576-CDS-Ecto-sp13_S_contig10510:162..420	1681462535.9109576-CDS-Ecto-sp13_S_contig10510:162..420	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig10510 163..420 +
1681462535.926062-CDS-Ecto-sp13_S_contig10510:1064..1145	1681462535.926062-CDS-Ecto-sp13_S_contig10510:1064..1145	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig10510 1065..1145 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig10510.489.1	prot_Ecto-sp13_S_contig10510.489.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig10510 163..1145 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig10510:163..1145+
coding sequence from alignment at Ecto-sp13_S_contig10510:163..1145+

protein sequence of mRNA_Ecto-sp13_S_contig10510.489.1

>prot_Ecto-sp13_S_contig10510.489.1 ID=prot_Ecto-sp13_S_contig10510.489.1|Name=mRNA_Ecto-sp13_S_contig10510.489.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=113bp
MMTKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTG
FKCGINYQPPTVVPGGDLARVQRAVCMVANTTAIAEALSRIDHKFDLMYA
KRAFVHWYVGEGM

mRNA from alignment at Ecto-sp13_S_contig10510:163..1145+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig10510.489.1 ID=mRNA_Ecto-sp13_S_contig10510.489.1|Name=mRNA_Ecto-sp13_S_contig10510.489.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=983bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10510:163..1145+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGACCAAGTGCGACCCCCGCCACGGCAAGTACATGGCGTGCTGCCT
CATGTACCGCGGAGACGTGGTGCCCAAGGACGTGAACGCCGCGGTGGCCA
CCATCAAGACCAAGCGCACCATCCAGTTCGTAGACTGGTGCCCCACCGGC
TTCAAGTGCGGCATCAACTACCAGCCCCCCACCGTCGTGCCCGGCGGCGA
CCTCGCCCGCGTGCAGCGCGCCGTGTGCATGGTGGCCAACACCACCGCCA
TTGCGGAGGTGCGTCTCTTTTTAATCTCGTGTTTCCGTTGATCTTCGTTG
TATGTGGTCAAGAATTTGTAGGGTATGTAACGTCCCCCGAGCGATTGCGC
TCGACTTTTCCTGCTTCTGCCAGAAATAGAGACGCAGTTTTGGGAAACGC
GCGTCAAGTACCAGCCATGAACGCATGCATCACGTCGTGCAGCCCGCCGT
GTCAAAACACTGCCGTGGTACATCTATGGGCAATTGACAGCACACAGGCC
AATACAGCCATCGATTGCGATGAAAAGATCAACTCAACACCGGTCAAGGA
TAGATCCATATCTTTTTCACGCAGATGGTCTGCGTAAATAGCGCTACCGG
TCCATCGTTGCTGCATGCCGAGTTCATCTTTAATCGCAACCGATGGGTGT
CTTGGCGTTTGTCATTGACTGATAGATAGAGCGATATAGAAGAGTAAGAA
GTTCACCATCACCTGGGCAGTGCCACCACACTTTGTTACGAGACAAAACC
TATACCTATGCTGTGTTTGGCCCGAGCATCTACGTCGAGTGTTGATTAAT
TTGTGGACATGTTTCTTTCGCGAAATTTGTCACCCACCTTTTGCCTGACT
ACCTCTTCCCTTCGACCGTTGTGCCATTACTTAACAATGTGTGCACTGCC
AGGCTCTGTCGCGCATCGACCACAAGTTCGACCTCATGTACGCCAAGCGT
GCGTTCGTGCACTGGTACGTGGGTGAGGGTATG

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10510:163..1145+

>mRNA_Ecto-sp13_S_contig10510.489.1 ID=mRNA_Ecto-sp13_S_contig10510.489.1|Name=mRNA_Ecto-sp13_S_contig10510.489.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=339bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10510:163..1145+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGACCAAGTGCGACCCCCGCCACGGCAAGTACATGGCGTGCTGCCT
CATGTACCGCGGAGACGTGGTGCCCAAGGACGTGAACGCCGCGGTGGCCA
CCATCAAGACCAAGCGCACCATCCAGTTCGTAGACTGGTGCCCCACCGGC
TTCAAGTGCGGCATCAACTACCAGCCCCCCACCGTCGTGCCCGGCGGCGA
CCTCGCCCGCGTGCAGCGCGCCGTGTGCATGGTGGCCAACACCACCGCCA
TTGCGGAGGCTCTGTCGCGCATCGACCACAAGTTCGACCTCATGTACGCC
AAGCGTGCGTTCGTGCACTGGTACGTGGGTGAGGGTATG