mRNA_Ecto-sp13_S_contig1051.487.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1051.487.1 vs. uniprot
Match: D7FT76_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT76_ECTSI) HSP 1 Score: 1837 bits (4759), Expect = 0.000e+0 Identity = 987/1153 (85.60%), Postives = 1031/1153 (89.42%), Query Frame = 1
Query: 223 AQEELLVVQEREGKGAEERNLMANAVSTTPRVATVSNSDSAAVRSVVDMRDESSARILEIGYRSVLRPEEGSGLAWRLGPQGQNNIVAQGGRSRVSNTFSDDATTRPHVKPPGIQQPWPMYAREGGEERREGAGGREDSRDRAEIPYRRPIEKEEDRMFRREGPIPDPPENMLGTGKATDHRGSPSLSETLSEHRRCVNPRRDQNTLVLAQPLPAGHVARCADNDDTDYRDVHEHSKQPHTADGGGQHITSSAEEVDSTVDSMTGDGMPRGQRKLWPPSPPSSCCGSVVESISLPRHEDTSQGLGDRLVSSSLVSDAAVAESHKMYPEGHRSMGFVARQRFEQLAAESRREEWSRAQEESRRKLASGGRWMNRTSRVILARS-FSCVGGE-KGNSHVTGGEGRRPSVFERLAHRAPYYEEDPVRDDYSDNEEYVRTEAVRADDHGARGYPFQPTINHRSSQLASRMPHRVKDMHGYPQQRLHQEGEEWLSRRKKRIQLADEELQERAAARHVNPESERVLARRSRSKMAWFRSAMMEAFEEVDADKTGWLSLAGVESLLSKCGMLPDQGPDDVRDDVLLAVWAALSEEETSEVGGYGSSDGGLDQDDLKPTFGVPVDDLAVLLAEAARTYEYGRVDARPRSDGHESFPSAFPEELRQNKQIKDLCNELSGIFEVNQLRHTSKRQDKRSVQTGETAEGNGRACSQGTSAKLKPAGRRRDGGDVLLSAPPRVVTRGQVAAMAARFEEQIRERERKIELLRRGEEARTTTDHTFEPSMAATATSEALALRRKVAQAAKGQGTGVLSRDGVISESRYPTKTDLRTSEEREVDENCTFQPRLFQPLPIPPPRYPVQSTARVGGRSGGGSTTDSAGDATSNIASATTVDRATASWMAQVNRLKAGRINRLRRLEEERATANRSEPLPPAVRQLFVDEGIQLCPTKNLSGRSSALANKRDGSTTSKGKGCNSARRTSNNVSSPTSWLRLQGRCRGHRRLKDKRREEQARKNAEDNAERLKRKRLLNRACRRSAAVVGLEAALSAREAKQECSGLDDPPVIIVELEFVRQKWWALLPFWADTCPKEAVGKLAEQQPTVVVEGVAHELEEFFRDEKDRAGECMTSVDRDHVAEQGVLAGRDAGPGKNNRRDVPKVVLRVDAG 3675
AQ+E V Q+RE KGA ERN M A+STT VA V SDS VRSVVDMRDESSARI EIGYRSVLRPEEGSGL WRLGPQ QNNIVAQGGRSRVSNT SDDA TR HV PGIQ+P + REG EE RE AGG+E RDRAE+PYRR IEK+EDRMFRREGPIP+PPEN +GTG+AT HRGSPSLSETLSEHR CVN R DQ+TLVLAQ PAGHVARCADNDDTDYR HEHSKQPHT DG GQH+TSS EE D+ V+ MTGD +PRG+R+LWPPS PSSCCGSVVES PRHEDTSQG GDRLVSSSLVS A VAESH MYPE HRSMGFVARQRFEQLAAE RREEWSR QEE+RRKLASGGRW+NRTSR ILARS FSC GG GNS VTGGEGR PSVFERLAHRAPY+EEDP DDYSDNEEY R AV AD GAR YPFQPTINHRSS LASRMPHR +DMHG PQQRLH+EGEEWLSRR+KRIQLADEELQE+AAARHVNPESERVLARRSRS+MAWFRSAMMEAFEEVDAD+TGWLSLAGVESLLSKCGMLPDQGPDDVRDDVLLAVWAALSEEETSEVGG+GSSDGGLDQ DLKPTFGVPVDDLAVLLAEAART EY RVDARPRSDGHESFPSAFPEEL+QNKQIKD+CNELSGIFEVNQL SKRQD R VQTGETAE RACSQGTSA+L PAGRRRDGGDVLLSAPPRVVTR QVAAMA RFEEQ+RERERKIELLRR EEARTTTDHTFEPSMAATAT EALALRRKVA+AAK QGTGV SRD VISESR+PTKTD RT+EEREVDENCTFQPRLFQPLP+PPPRYPV STA VGGRSGG STTDSAG SATTVDRATASWMAQVNRLK GR RLRRLEEERATANRSEPLPPAVRQLFVDEGIQLCPTKNLSGRSSALANKRDGS TSKGKGCNSARRTSN VSSPTSWLRLQGRC G RRLKDKRREEQARKNAED+AERLKRKR+L+RACRRSAAVVGLEAALSAREA++ECSGLDDPPV+IVELEFVRQKWWALLPFWADTCPKEAVGKLAEQQP VV+EGVAHELEEFFRDE DRAG+CMTSVDRD VAEQG LAGRD GPGKNNRRDVPKVVLRVDAG
Sbjct: 2 AQDEPRVAQDREEKGAAERNPMTTAISTTAGVAAVPTSDSV-VRSVVDMRDESSARIWEIGYRSVLRPEEGSGLPWRLGPQDQNNIVAQGGRSRVSNTISDDAATRSHVNAPGIQEPCALSTREG-EETRESAGGQEGHRDRAEVPYRRLIEKKEDRMFRREGPIPNPPENTVGTGRATGHRGSPSLSETLSEHRCCVNRRLDQDTLVLAQTPPAGHVARCADNDDTDYRGFHEHSKQPHTDDGEGQHVTSSTEEFDNAVELMTGDRIPRGRRELWPPSAPSSCCGSVVESFLPPRHEDTSQGPGDRLVSSSLVSAAPVAESHTMYPEEHRSMGFVARQRFEQLAAERRREEWSRVQEETRRKLASGGRWVNRTSRAILARSSFSCAGGGGNGNSLVTGGEGRGPSVFERLAHRAPYHEEDPAGDDYSDNEEYGRAAAVGADGQGAREYPFQPTINHRSSLLASRMPHRDEDMHGCPQQRLHREGEEWLSRREKRIQLADEELQEKAAARHVNPESERVLARRSRSRMAWFRSAMMEAFEEVDADRTGWLSLAGVESLLSKCGMLPDQGPDDVRDDVLLAVWAALSEEETSEVGGHGSSDGGLDQGDLKPTFGVPVDDLAVLLAEAARTCEYDRVDARPRSDGHESFPSAFPEELQQNKQIKDVCNELSGIFEVNQLHRASKRQDNRRVQTGETAEEERRACSQGTSAELIPAGRRRDGGDVLLSAPPRVVTRSQVAAMAERFEEQVRERERKIELLRRSEEARTTTDHTFEPSMAATATPEALALRRKVARAAKRQGTGVPSRDRVISESRHPTKTDRRTTEEREVDENCTFQPRLFQPLPMPPPRYPVPSTAHVGGRSGGESTTDSAGXXXXXXXSATTVDRATASWMAQVNRLKTGRKKRLRRLEEERATANRSEPLPPAVRQLFVDEGIQLCPTKNLSGRSSALANKRDGSATSKGKGCNSARRTSNKVSSPTSWLRLQGRCPGRRRLKDKRREEQARKNAEDDAERLKRKRVLSRACRRSAAVVGLEAALSAREAERECSGLDDPPVVIVELEFVRQKWWALLPFWADTCPKEAVGKLAEQQPRVVMEGVAHELEEFFRDEIDRAGKCMTSVDRDQVAEQGALAGRDVGPGKNNRRDVPKVVLRVDAG 1152
BLAST of mRNA_Ecto-sp13_S_contig1051.487.1 vs. uniprot
Match: A0A6H5JSU8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSU8_9PHAE) HSP 1 Score: 1788 bits (4632), Expect = 0.000e+0 Identity = 956/1152 (82.99%), Postives = 1018/1152 (88.37%), Query Frame = 1
Query: 223 AQEELLVVQEREGKGAEERNLMANAVSTTPRVATVSNSDSAAVRSVVDMRDESSARILEIGYRSVLRPEEGSGLAWRLGPQGQNNIVAQGGRSRVSNTFSDDATTRPHVKPPGIQQPWPMYAREGGEERREGAGGREDSRDRAEIPYRRPIEKEEDRMFRREGPIPDPPENMLGTGKATDHRGSPSLSETLSEHRRCVNPRRDQNTLVLAQPLPAGHVARCADNDDTDYRDVHEHSKQPHTADGGGQHITSSAEEVDSTVDSMTGDGMPRGQRKLWPPSPPSSCCGSVVESISLPRHEDTSQGLGDRLVSSSLVSDAAVAESHKMYPEGHRSMGFVARQRFEQLAAESRREEWSRAQEESRRKLASGGRWMNRTSRVILARS-FSCVGGEKGNSHVTGGEGRRPSVFERLAHRAPYYEEDPVRDDYSDNEEYVRTEAVRADDHGARGYPFQPTINHRSSQLASRMPHRVKDMHGYPQQRLHQEGEEWLSRRKKRIQLADEELQERAAARHVNPESERVLARRSRSKMAWFRSAMMEAFEEVDADKTGWLSLAGVESLLSKCGMLPDQGPDDVRDDVLLAVWAALSEEETSEVGGYGSSDGGLDQDDLKPTFGVPVDDLAVLLAEAARTYEYGRVDARPRSDGHESFPSAFPEELRQNKQIKDLCNELSGIFEVNQLRHTSKRQDKRSVQTGETAEGNGRACSQGTSAKLKPAGRRRDGGDVLLSAPPRVVTRGQVAAMAARFEEQIRERERKIELLRRGEEARTTTDHTFEPSMAATATSEALALRRKVAQAAKGQGTGVLSRDGVISESRYPTKTDLRTSEEREVDENCTFQPRLFQPLPIPPPRYPVQSTARVGGRSGGGSTTDSAGDATSNIASATTVDRATASWMAQVNRLKAGRINRLRRLEEERATANRSEPLPPAVRQLFVDEGIQLCPTKNLSGRSSALANKRDGSTTSKGKGCNSARRTSNNVSSPTSWLRLQGRCRGHRRLKDKRREEQARKNAEDNAERLKRKRLLNRACRRSAAVVGLEAALSAREAKQECSGLDDPPVIIVELEFVRQKWWALLPFWADTCPKEAVGKLAEQQPTVVVEGVAHELEEFFRDEKDRAGECMTSVDRDHVAEQGVLAGRDAGPGKNNRRDVPKVVLRVDAG 3675
AQ+E V QERE KGA ERN A+STT RVA V SDS VRSVVDMRD+SSARI EIGYRS+LRPEEGSGL WRLGPQ QN+IV QGGRSRVSNTFSDDA TR HV PG Q+PWP+ AREG EE RE AGG+E +RDRAEIP RP+E EEDRMFRR GPIPD P N + TG+AT H GSPSL ET SEH CVN RRDQ+TLVLAQ PAGHVARCAD DD DYRD HEHS+QP+TADG GQHITSS E+VD+ V+SMTGDG+PRGQR+L PPSPPSSCCGSVV+S S PRHEDTSQGLGDRLVSS VS A+AESH M PE H SMGFVARQRFEQLAAE RREEWSRA+EE+RRKLA+GG W+N TSR ILARS FSC GG+KGNSHVTGGEGR PSVFERLAHRAPY+EEDPVRDD+ DNEEY R AVRAD HGARG+PFQPTINHRSS LASRMP+R KD HG PQQRLH+EGEEWLSRR+KRIQLADEE+QE+AAARHVNPESERVLARRSRS+MAWFRSAMMEAF+EVDA++TGWLSLAGVESLLSKCGMLP+QGPDDVRDDVLLAVWA LSEEETSEVGG+GSSDGGLDQDDLKPTFGVP DDLAVLLAEAART EY RVDARP+ DGHESFPSAF EEL+Q+KQIKDLCNELSGIFEVNQL SKRQDKR VQTGETA RACSQG S +LKPAGRRRDG DVLLSAPPRVVTRGQVAAMA RFEEQIRERERKIE+LRR +EARTTTDHTF+P+MAATAT EALALRRKVA+ AKGQGTGV SRD ISESR+PTKTDLRTSEER+V+ENCTFQPRLFQPLPIPPPRYPV ST RVGGRSGG STTDSA VDRATASWMAQVNRLKAGR NRLRRLEEERATANRSEPLPPAVRQLFVDEGIQL PTK+LSGRSSA ANKRDGSTTSKGK CNSARRTSN VSSP+SW RLQGRCRG RRLKDKRREEQARKNAED+AE+LKRKR+L+RACRRSAAVVGLEAALSAREA++ECSGLDDPPV+IVELEFVRQKWWALLPFWADTCPKEAVGKLAEQQP VVVEGVA ELEEFFRDE DRAG CMTSVDRD VAEQG LAGRD GPGKNNRR VPKVVLRVD G
Sbjct: 2 AQDEPRVAQEREEKGAAERNPTTTAISTTARVAAVPISDSV-VRSVVDMRDDSSARIWEIGYRSILRPEEGSGLPWRLGPQDQNSIVDQGGRSRVSNTFSDDAATRSHVNAPGTQEPWPLSAREG-EETRESAGGQEGNRDRAEIPCERPVENEEDRMFRRAGPIPDLPANTVSTGRATGHMGSPSLPETFSEHNCCVNRRRDQDTLVLAQTPPAGHVARCADTDDNDYRDFHEHSEQPNTADGEGQHITSSTEKVDNAVESMTGDGIPRGQRELRPPSPPSSCCGSVVQSFSPPRHEDTSQGLGDRLVSSPYVSAVAMAESHTMSPEDHSSMGFVARQRFEQLAAERRREEWSRAREETRRKLAAGGWWVNCTSRAILARSSFSCAGGDKGNSHVTGGEGRGPSVFERLAHRAPYHEEDPVRDDFFDNEEYGRAAAVRADGHGARGHPFQPTINHRSSLLASRMPYRDKDKHGCPQQRLHREGEEWLSRREKRIQLADEEMQEKAAARHVNPESERVLARRSRSRMAWFRSAMMEAFDEVDANRTGWLSLAGVESLLSKCGMLPNQGPDDVRDDVLLAVWATLSEEETSEVGGHGSSDGGLDQDDLKPTFGVPADDLAVLLAEAARTCEYDRVDARPQMDGHESFPSAFAEELQQSKQIKDLCNELSGIFEVNQLHRASKRQDKRRVQTGETAGEERRACSQGISTELKPAGRRRDGEDVLLSAPPRVVTRGQVAAMAERFEEQIRERERKIEILRRSDEARTTTDHTFQPNMAATATPEALALRRKVARTAKGQGTGVPSRDRAISESRHPTKTDLRTSEERDVEENCTFQPRLFQPLPIPPPRYPVPSTPRVGGRSGGESTTDSAXXXXXXXXXXXXVDRATASWMAQVNRLKAGRKNRLRRLEEERATANRSEPLPPAVRQLFVDEGIQLGPTKDLSGRSSASANKRDGSTTSKGKDCNSARRTSNKVSSPSSWFRLQGRCRGRRRLKDKRREEQARKNAEDDAEQLKRKRVLSRACRRSAAVVGLEAALSAREAERECSGLDDPPVVIVELEFVRQKWWALLPFWADTCPKEAVGKLAEQQPRVVVEGVAQELEEFFRDEIDRAGACMTSVDRDQVAEQGALAGRDVGPGKNNRRHVPKVVLRVDVG 1151 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1051.487.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1051.487.1 >prot_Ecto-sp13_S_contig1051.487.1 ID=prot_Ecto-sp13_S_contig1051.487.1|Name=mRNA_Ecto-sp13_S_contig1051.487.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=1226bp MSVTSNGRSHQHVVEHRATPSTAAGKKRNVSFDGDLVERTPPLPAATAAGback to top mRNA from alignment at Ecto-sp13_S_contig1051:2628..7082- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1051.487.1 ID=mRNA_Ecto-sp13_S_contig1051.487.1|Name=mRNA_Ecto-sp13_S_contig1051.487.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4455bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1051:2628..7082- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1051:2628..7082- >mRNA_Ecto-sp13_S_contig1051.487.1 ID=mRNA_Ecto-sp13_S_contig1051.487.1|Name=mRNA_Ecto-sp13_S_contig1051.487.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=3678bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1051:2628..7082- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |