mRNA_Ecto-sp13_S_contig1051.486.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1051.486.1
Unique NamemRNA_Ecto-sp13_S_contig1051.486.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1051.486.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1051contigEcto-sp13_S_contig1051:191..2316 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1715
Hectar predicted targeting categoryother localisation
Exons2
Cds size1554
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462535.6610882-UTR-Ecto-sp13_S_contig1051:190..2471681462535.6610882-UTR-Ecto-sp13_S_contig1051:190..247Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1051 191..247 +
1681462535.6919544-UTR-Ecto-sp13_S_contig1051:2212..23161681462535.6919544-UTR-Ecto-sp13_S_contig1051:2212..2316Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1051 2213..2316 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462535.671574-CDS-Ecto-sp13_S_contig1051:247..7761681462535.671574-CDS-Ecto-sp13_S_contig1051:247..776Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1051 248..776 +
1681462535.6838222-CDS-Ecto-sp13_S_contig1051:1187..22121681462535.6838222-CDS-Ecto-sp13_S_contig1051:1187..2212Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1051 1188..2212 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1051.486.1prot_Ecto-sp13_S_contig1051.486.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1051 248..2212 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1051.486.1

>prot_Ecto-sp13_S_contig1051.486.1 ID=prot_Ecto-sp13_S_contig1051.486.1|Name=mRNA_Ecto-sp13_S_contig1051.486.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=518bp
MGLCNERSPRAMHSANKTSSVASSRKVARAARGVGRVASPSSEASAHSIP
LFMATNKTGSKSTDGERVDRCWEGVQDQEEKQVLSCCCSCGAKKDGDRAP
TKLSLQHCRPHPARFARTVMPMFVIDSDPSSAALPQHGEGINKCVDRCAR
TTSEVDNMGDLQRQSTPATIGSDGRKGNKSPAGTTDTSSTSSPASSPPGV
ALVRKCTNARQQGVTFTNDEHTSTPVSLTSFPEEESGCEATPARDDGDGA
NTIEQEEDGDVDTSPTESSCSDRHFFVGAQRLDVSTDVEQLAAERESMEA
GPDDAKASVPKILPEDVALGGLRDSGKGHEKRDGYSATRGEPSIACVAEE
AMAAPAGRSESKSPDLPSVEKRESSPDTATVGDVDDQDYNFVFDDEEPGD
SCRKNVRFSDQALWRVHEVRASFEQHELAELFYTTAELDVMLEEAEMEEA
LDRSKASALQEKSRDGEGVLGDNNDSMPIGAESTHRGKVDGGADLGGLEN
LSVESLSLDDEKSEYNF*
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mRNA from alignment at Ecto-sp13_S_contig1051:191..2316+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1051.486.1 ID=mRNA_Ecto-sp13_S_contig1051.486.1|Name=mRNA_Ecto-sp13_S_contig1051.486.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2126bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1051:191..2316+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTGGTGGCCAGTGCTTTTTCCGATGATGGGGTCGTACACATTCTCCA
AGAGAAGATGGGACTGTGCAACGAAAGATCGCCGAGAGCAATGCATTCCG
CCAACAAAACGTCTTCTGTAGCCAGCAGCAGGAAGGTGGCCAGGGCAGCC
AGGGGGGTAGGACGAGTGGCAAGTCCTTCCTCAGAGGCAAGCGCACACAG
TATTCCGCTGTTCATGGCAACGAACAAGACAGGTAGCAAAAGCACAGATG
GAGAGCGTGTCGACAGGTGCTGGGAAGGGGTTCAAGATCAGGAGGAAAAG
CAAGTGCTTTCGTGTTGCTGCTCCTGCGGCGCCAAAAAAGACGGTGATCG
TGCCCCGACGAAATTAAGCTTGCAACATTGTCGCCCACATCCCGCGCGTT
TTGCTCGGACCGTGATGCCGATGTTTGTCATCGACTCGGACCCCTCCTCG
GCCGCCCTGCCACAGCATGGCGAGGGGATAAACAAGTGTGTTGATAGGTG
CGCTCGAACGACCTCCGAAGTCGACAACATGGGTGATCTTCAACGGCAGA
GCACGCCGGCTACCATCGGATCTGATGGCAGAAAAGGTGATCACAGACGT
ACTTGTTTGGCCGTTGGAGAAGGACAACGCAAGGATGGTGAAGAGAATCA
GGATGAATTCCCGTCTGTATTTGTGGGTGTGAACCCTCATCTCCTAGAGA
GTTAGCGAAGTTGGTCTGTATTGACTGCCCGTGATCGACATTGAGAGGGA
AGTGAATCAAGTGAATAGCGGTGCGATGAGCACAGCATGTGGAGAAAAGG
TTGAGGACGTGCCTCCTCCGTAGAAAGAAGCGGAGCCTCCTCGTTCCTTC
TCCTGAGGTCGCAATCATGTAGTAGCCCCCTGGGCTGATCTTGTTGGTGT
TATCGCCGCTTCACCCGGTACGACCACAACATCCACTGCTACTGCCAATG
ATACCCATGTTCCCCTCCTGTCGTTGTGGACGTCCAACGCCATGCAGGAA
ACAAGTCGCCCGCAGGGACGACAGACACTTCTTCGACTAGTTCTCCTGCT
TCTTCCCCTCCTGGCGTCGCTCTTGTGCGGAAGTGCACGAACGCGCGACA
GCAAGGAGTGACTTTTACGAACGACGAACACACGTCAACTCCAGTTTCCC
TTACGTCTTTCCCTGAGGAAGAGTCGGGGTGTGAGGCAACGCCGGCTCGT
GACGACGGCGACGGAGCCAACACCATAGAGCAAGAGGAAGACGGAGATGT
GGACACGTCACCGACTGAGAGCTCATGTAGCGACCGACACTTCTTCGTTG
GGGCTCAGAGATTAGATGTCTCCACCGACGTCGAACAACTGGCAGCGGAA
AGAGAATCGATGGAGGCGGGGCCGGACGACGCGAAGGCTAGCGTCCCGAA
GATCCTCCCGGAGGATGTAGCTCTAGGGGGGCTACGGGACAGCGGTAAGG
GCCACGAAAAGAGGGACGGCTACAGTGCAACCAGGGGTGAGCCAAGCATT
GCTTGTGTGGCGGAGGAGGCCATGGCTGCTCCAGCAGGGAGGTCCGAGTC
CAAAAGCCCGGACCTACCATCAGTTGAGAAGCGAGAATCTTCCCCCGATA
CCGCTACTGTAGGAGACGTGGACGACCAAGACTACAATTTCGTATTTGAC
GACGAAGAGCCAGGGGATAGCTGCAGAAAAAACGTACGCTTCTCGGACCA
GGCTCTGTGGCGCGTGCACGAGGTTCGAGCCAGCTTCGAGCAGCACGAAC
TTGCGGAACTCTTTTACACCACCGCGGAGCTAGATGTCATGTTGGAGGAA
GCAGAGATGGAAGAAGCCTTGGATCGTTCCAAAGCCAGTGCATTGCAGGA
GAAGAGCCGCGATGGTGAAGGGGTTCTCGGCGACAATAATGACTCAATGC
CCATCGGCGCTGAAAGTACACACAGAGGGAAGGTCGATGGTGGCGCCGAT
CTTGGGGGGTTAGAAAATTTATCCGTTGAAAGCCTTTCGTTAGACGACGA
AAAATCTGAATACAATTTTTGAAACTACTGGTGCTGAAACTTTATGGAGA
TGAGGGATTTGCAAGAGTGCGTTGCCCCGACCAGCCACCTCGGTATCACT
GTTGTTAATTTCTTCCTCAACACCGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1051:191..2316+

>mRNA_Ecto-sp13_S_contig1051.486.1 ID=mRNA_Ecto-sp13_S_contig1051.486.1|Name=mRNA_Ecto-sp13_S_contig1051.486.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1554bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1051:191..2316+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGACTGTGCAACGAAAGATCGCCGAGAGCAATGCATTCCGCCAACAA
AACGTCTTCTGTAGCCAGCAGCAGGAAGGTGGCCAGGGCAGCCAGGGGGG
TAGGACGAGTGGCAAGTCCTTCCTCAGAGGCAAGCGCACACAGTATTCCG
CTGTTCATGGCAACGAACAAGACAGGTAGCAAAAGCACAGATGGAGAGCG
TGTCGACAGGTGCTGGGAAGGGGTTCAAGATCAGGAGGAAAAGCAAGTGC
TTTCGTGTTGCTGCTCCTGCGGCGCCAAAAAAGACGGTGATCGTGCCCCG
ACGAAATTAAGCTTGCAACATTGTCGCCCACATCCCGCGCGTTTTGCTCG
GACCGTGATGCCGATGTTTGTCATCGACTCGGACCCCTCCTCGGCCGCCC
TGCCACAGCATGGCGAGGGGATAAACAAGTGTGTTGATAGGTGCGCTCGA
ACGACCTCCGAAGTCGACAACATGGGTGATCTTCAACGGCAGAGCACGCC
GGCTACCATCGGATCTGATGGCAGAAAAGGAAACAAGTCGCCCGCAGGGA
CGACAGACACTTCTTCGACTAGTTCTCCTGCTTCTTCCCCTCCTGGCGTC
GCTCTTGTGCGGAAGTGCACGAACGCGCGACAGCAAGGAGTGACTTTTAC
GAACGACGAACACACGTCAACTCCAGTTTCCCTTACGTCTTTCCCTGAGG
AAGAGTCGGGGTGTGAGGCAACGCCGGCTCGTGACGACGGCGACGGAGCC
AACACCATAGAGCAAGAGGAAGACGGAGATGTGGACACGTCACCGACTGA
GAGCTCATGTAGCGACCGACACTTCTTCGTTGGGGCTCAGAGATTAGATG
TCTCCACCGACGTCGAACAACTGGCAGCGGAAAGAGAATCGATGGAGGCG
GGGCCGGACGACGCGAAGGCTAGCGTCCCGAAGATCCTCCCGGAGGATGT
AGCTCTAGGGGGGCTACGGGACAGCGGTAAGGGCCACGAAAAGAGGGACG
GCTACAGTGCAACCAGGGGTGAGCCAAGCATTGCTTGTGTGGCGGAGGAG
GCCATGGCTGCTCCAGCAGGGAGGTCCGAGTCCAAAAGCCCGGACCTACC
ATCAGTTGAGAAGCGAGAATCTTCCCCCGATACCGCTACTGTAGGAGACG
TGGACGACCAAGACTACAATTTCGTATTTGACGACGAAGAGCCAGGGGAT
AGCTGCAGAAAAAACGTACGCTTCTCGGACCAGGCTCTGTGGCGCGTGCA
CGAGGTTCGAGCCAGCTTCGAGCAGCACGAACTTGCGGAACTCTTTTACA
CCACCGCGGAGCTAGATGTCATGTTGGAGGAAGCAGAGATGGAAGAAGCC
TTGGATCGTTCCAAAGCCAGTGCATTGCAGGAGAAGAGCCGCGATGGTGA
AGGGGTTCTCGGCGACAATAATGACTCAATGCCCATCGGCGCTGAAAGTA
CACACAGAGGGAAGGTCGATGGTGGCGCCGATCTTGGGGGGTTAGAAAAT
TTATCCGTTGAAAGCCTTTCGTTAGACGACGAAAAATCTGAATACAATTT
TTGA
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