mRNA_Ecto-sp13_S_contig10506.484.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10506.484.1 vs. uniprot
Match: A0A6H5K923_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K923_9PHAE) HSP 1 Score: 579 bits (1493), Expect = 2.070e-193 Identity = 421/506 (83.20%), Postives = 432/506 (85.38%), Query Frame = 1
Query: 1 SDKVLVGIVLWNDLAIALADYRRRGSSITAISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSEWEESPEEGGAEGDSXXXXXXPRVAEVGGAIGRRMGWFPMARTAEASLLQELDRLRAETIDEERNGETPPPPATTRGEGAGKREEGCGDDGAGSLPPLGEGIPLGGGTAAAAVGTDGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAGIEKAKRAPIRFYLVREGHRFVPVGRNPKKGAWKELPEVAIPAARESIPVVLDPSPYQVSHTTELSKVDIAFRLLRLDNAYVCNAGRLVGVITREALADFVDDREVSPMDDCVRLCGALACCLPGRAPADGNAGGSGLRRRISRRSISRGKLAASAVVGELPPGRGGATTTISSASAGRRRGAGAPHGTVRFEPTTPTAATADVADTDLGFATSGQPLLGGRGGLNRRGYSSLGDNTEGRGEEGREGXXGRGGASSPRRGGGGEWDAV 1518
SDKVLVGIVLWNDLAIALADYR+RGSSITAIS XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXPR+AEVGGA+GRRMGWFPM RTAE SLLQELDR RAET GEGAGKRE+GCGDDG+ SLPPLGEGIPLGGGT XXXXXXXXXXXXXXXXXXXXXXXXXXXXXV GIEKAKRAP+RFYLVREGHRFVPVGRNPKKGAWKELPEVAIP ARESIPVVLDPSPYQVSHTTELSKVDIAFRLLRLDNAYVCNAGRLVGVITREALADFVDDREVSPMDDCVRLCGALACCLPGRAPAD NAGG+G+ +RISRRSISRGKLAASAVVGELP GRGGATTT++S S GRRRGAG P GTVRFEPT TA TAD ADTDLGFATSGQPLLGGRGGLN RGYSSLGDNTEG GEEGREG GRG SSPRRGG G WDAV
Sbjct: 379 SDKVLVGIVLWNDLAIALADYRKRGSSITAISSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------------XXXXXXXXPRLAEVGGAVGRRMGWFPMVRTAEVSLLQELDRRRAETXXXXXXXXXXXXXXXXXGEGAGKREDGCGDDGSDSLPPLGEGIPLGGGTXXXXX---------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVGIEKAKRAPVRFYLVREGHRFVPVGRNPKKGAWKELPEVAIPTARESIPVVLDPSPYQVSHTTELSKVDIAFRLLRLDNAYVCNAGRLVGVITREALADFVDDREVSPMDDCVRLCGALACCLPGRAPADDNAGGTGVPKRISRRSISRGKLAASAVVGELPAGRGGATTTMNSVSTGRRRGAGGPDGTVRFEPTASTATTADGADTDLGFATSGQPLLGGRGGLNWRGYSSLGDNTEGGGEEGREGEGGRG-CSSPRRGGRGGWDAV 861
BLAST of mRNA_Ecto-sp13_S_contig10506.484.1 vs. uniprot
Match: D8LJI7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJI7_ECTSI) HSP 1 Score: 481 bits (1237), Expect = 1.090e-157 Identity = 333/500 (66.60%), Postives = 338/500 (67.60%), Query Frame = 1
Query: 1 SDKVLVGIVLWNDLAIALADYRRRGSSITAISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSEWEESPEEGGAEGDSXXXXXXPRVAEVGGAIGRRMGWFPMARTAEASLLQELDRLRAETIDEERNGETPPPPATTRGEGAGKREEG-CGDDGAGSLPPLGEGIPLGGGTAAAAVGTDGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-VAGIEKAKRAPIRFYLVREGHRFVPVGRNPKKGAWKELPEVAIPAARESIPVVLDPSPYQVSHTTELSKVDIAFRLLRLDNAYVCNAGRLVGVITREALADFVDDREVSPMDDCVRLCGALACCLPGRAPADGNAGGSGLRRRISRRSISRGKLAASAVVGELPPGRGGATTTISSASAGRRRGAGAPHGTVRFEPTTPTAATADVADTDLGFATSGQPLLGGRGGLNRRGYSSLGDNTEGRGEEGREGXXGRGGASSPRRG 1494
SDKVLVG+VLWNDLAIALADYRRRGSSITAIS XXXXXXXXXXXXXXX XXXX PR+AEVGGAIGRR+GWFPM RTAEASLL+EL AGKRE+G AGSL PLGEGIPLGGGTAA XXXXXXXXXXXXXXX VAGIEKAKRAPIRFYLVREGHRFVPVGRNPKKGAWKELPEVAIPAARESIPVVLDPSPYQVSHTTELSKVDIAFRLLRLDNAYVCNAGRLVGVITREALADFVDDREVSPMDDCVRLCGALACCLPGRAPAD NAGGSGLRRRISRRSISRGKLAASAVVGELPPGRGGA DLGFATSGQPLLGG GGLN RGYSSLGDNTEG GEEGREG GRGGASSPRRG
Sbjct: 222 SDKVLVGVVLWNDLAIALADYRRRGSSITAISSTTTAPASINSSRGAPLPAFASTTTMIDGRRFQVVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWWPRLAEVGGAIGRRIGWFPMVRTAEASLLREL---------------------------AGKREDGGXXXXDAGSLSPLGEGIPLGGGTAAXXXXXXXXXXXXXXXXXXXXXXXRRTRSSRKALSPAPPVPVPVAGIEKAKRAPIRFYLVREGHRFVPVGRNPKKGAWKELPEVAIPAARESIPVVLDPSPYQVSHTTELSKVDIAFRLLRLDNAYVCNAGRLVGVITREALADFVDDREVSPMDDCVRLCGALACCLPGRAPADDNAGGSGLRRRISRRSISRGKLAASAVVGELPPGRGGA---------------------------------------DLGFATSGQPLLGGGGGLNSRGYSSLGDNTEGGGEEGREGDGGRGGASSPRRG 655
BLAST of mRNA_Ecto-sp13_S_contig10506.484.1 vs. uniprot
Match: A0A835YU91_9STRA (Chloride channel n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU91_9STRA) HSP 1 Score: 92.0 bits (227), Expect = 1.730e-15 Identity = 47/109 (43.12%), Postives = 71/109 (65.14%), Query Frame = 1
Query: 736 APIRFYLVREGHRFVPVGRNPKKGAWKELPEVAIPAARESIPVVLDPSPYQVSHTTELSKVDIAFRLLRLDNAYVCNAGRLVGVITREALADFVDDREVSPMDDCVRLC 1062
A +RF +V+ G + PV +G + + + ++IP+V+DPSP QV+H+TEL K+D FR+L+LD A+VC AG+LVG +TR + FV RE P+D+C+ LC
Sbjct: 631 AHLRFVVVKGGGKVAPVVDT--RGTAYCMQHMLRLTSIDTIPIVMDPSPLQVAHSTELRKLDYMFRMLKLDIAFVCRAGKLVGWVTRGTIRRFVGAREPQPIDECIALC 737
BLAST of mRNA_Ecto-sp13_S_contig10506.484.1 vs. uniprot
Match: W7UA92_9STRA (Chloride channel protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7UA92_9STRA) HSP 1 Score: 88.2 bits (217), Expect = 3.190e-14 Identity = 43/87 (49.43%), Postives = 59/87 (67.82%), Query Frame = 1
Query: 859 PVVLDPSPYQVSHTTELSKVDIAFRLLRLDNAYVCNAGRLVGVITREALADFVDDREVSPMDDCVRLCGA----LACCLPGRAPADG 1107
P+++DPSPYQV T LSKVD +FR+L++ AYV +GRL+GV+TR++L +FV RE PM C++L G+ L CC R P G
Sbjct: 845 PLIMDPSPYQVGDRTLLSKVDFSFRMLKVTQAYVVRSGRLLGVLTRDSLTEFVGTREKKPMHRCLQLLGSCWDSLCCCFRSRRPKVG 931
BLAST of mRNA_Ecto-sp13_S_contig10506.484.1 vs. uniprot
Match: A0A7S2FKC7_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FKC7_9STRA) HSP 1 Score: 79.3 bits (194), Expect = 3.520e-13 Identity = 45/110 (40.91%), Postives = 66/110 (60.00%), Query Frame = 1
Query: 742 IRFYLVREGHRFVPV---GRNPKKGAWKELPEVAIPAARESIPVVLDPSPYQVSHTTELSKVDIAFRLLRLDNAYVCNAGRLVGVITREALADFVDDREVSPMDDCVRLC 1062
++F + G + VPV R+P P +++P LD SPYQV T LSKVD+ FR+L++++AYV AGRL+GVITR+ L + + D+E P+D C+ LC
Sbjct: 79 VQFIIYDNGTKPVPVMGTRRSPNNLLTGYSPLLSVP---------LDTSPYQVLDTMHLSKVDLIFRMLKVNHAYVTRAGRLIGVITRQRLREHLGDKEKRPIDSCLDLC 179
BLAST of mRNA_Ecto-sp13_S_contig10506.484.1 vs. uniprot
Match: A0A7S3GUG0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GUG0_9STRA) HSP 1 Score: 72.8 bits (177), Expect = 4.440e-11 Identity = 36/69 (52.17%), Postives = 45/69 (65.22%), Query Frame = 1
Query: 856 IPVVLDPSPYQVSHTTELSKVDIAFRLLRLDNAYVCNAGRLVGVITREALADFVDDREVSPMDDCVRLC 1062
I V LDPSPYQ+ + LSKVD+ FRLL L+ AYV N+GRLVGV+TR L D++ P D + C
Sbjct: 94 IAVPLDPSPYQIVDSMHLSKVDMVFRLLSLNQAYVTNSGRLVGVVTRSLLRDYLGGHRKKPTDRVKKFC 162
BLAST of mRNA_Ecto-sp13_S_contig10506.484.1 vs. uniprot
Match: A0A6T5VIZ2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A6T5VIZ2_9STRA) HSP 1 Score: 66.6 bits (161), Expect = 4.970e-8 Identity = 38/120 (31.67%), Postives = 63/120 (52.50%), Query Frame = 1
Query: 742 IRFYLVRE-GHRFVPVG----------------RNPKKGAWKELPEVAIPAARESIPVVLDPSPYQVSHTTELSKVDIAFRLLRLDNAYVCNAGRLVGVITREALADFVDDREVSPMDDC 1050
I++ L+ + G+ F+PV RN + +W + S V +DPSPYQ+ T +L+KV++ FR+L+L+ AYV GR+VG+ITR + ++V P ++C
Sbjct: 190 IQYVLISDDGNSFIPVASTSAVASSHTPSNKRLRNNRLSSWAAM----------SYAVAIDPSPYQIVDTMQLNKVNVIFRMLKLNQAYVTRNGRVVGIITRSIMREYVSKYVKKPAENC 299
BLAST of mRNA_Ecto-sp13_S_contig10506.484.1 vs. uniprot
Match: A0A7S3NNS7_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NNS7_9STRA) HSP 1 Score: 66.6 bits (161), Expect = 1.490e-7 Identity = 43/110 (39.09%), Postives = 62/110 (56.36%), Query Frame = 1
Query: 733 RAPIRFYLVREGHRFVPVGRNPKKGAWKELPEVAIPAARESIPVVLDPSPYQVSHTTELSKVDIAFRLLRLDNAYVCNAGRLVGVITREALADFVDDREVSPMDDCVRLC 1062
+A +RF ++ G R VPV + + L A+ +I V+LD SPYQ+ T +L+KVD+ FR L+++ AYV +G LVGV+TR L + PMD C LC
Sbjct: 849 QAVLRF-VINHGGRAVPVATSSTQTNLSPLF-----ASCPNISVLLDTSPYQILDTMDLAKVDLIFRTLKVNQAYVTCSGVLVGVVTRARLRKVLAQDAKEPMDRCRYLC 952
BLAST of mRNA_Ecto-sp13_S_contig10506.484.1 vs. uniprot
Match: A0A8K1CAK7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CAK7_PYTOL) HSP 1 Score: 63.5 bits (153), Expect = 1.260e-6 Identity = 27/57 (47.37%), Postives = 43/57 (75.44%), Query Frame = 1
Query: 847 RESIPVVLDPSPYQVSHTTELSKVDIAFRLLRLDNAYVCNAGRLVGVITREALADFV 1017
R + V++DPSP+Q+ T + +VD+ FR+L+L+NAY+ +GRLVG+ITR+ L F+
Sbjct: 769 RTKLTVLIDPSPFQLMEMTPMKRVDLLFRMLKLNNAYITRSGRLVGLITRDRLMTFL 825
BLAST of mRNA_Ecto-sp13_S_contig10506.484.1 vs. uniprot
Match: A0A418ERF8_9STRA (CBS domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418ERF8_9STRA) HSP 1 Score: 59.3 bits (142), Expect = 1.330e-6 Identity = 27/52 (51.92%), Postives = 39/52 (75.00%), Query Frame = 1
Query: 862 VVLDPSPYQVSHTTELSKVDIAFRLLRLDNAYVCNAGRLVGVITREALADFV 1017
V+++PSP+QV T + +VD FR+L+L+NAYV AGRLVGV++R L F+
Sbjct: 66 VLMNPSPFQVVEMTTMQRVDAVFRMLKLNNAYVTQAGRLVGVVSRARLMRFL 117 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10506.484.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 18
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10506.484.1 >prot_Ecto-sp13_S_contig10506.484.1 ID=prot_Ecto-sp13_S_contig10506.484.1|Name=mRNA_Ecto-sp13_S_contig10506.484.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=449bp MIDGRRFQVVGGGDSSAAAAAAAGGRSEWEESPEEGGAEGDSGGGSWWPRback to top mRNA from alignment at Ecto-sp13_S_contig10506:1993..5715- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10506.484.1 ID=mRNA_Ecto-sp13_S_contig10506.484.1|Name=mRNA_Ecto-sp13_S_contig10506.484.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3723bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10506:1993..5715- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10506:1993..5715- >mRNA_Ecto-sp13_S_contig10506.484.1 ID=mRNA_Ecto-sp13_S_contig10506.484.1|Name=mRNA_Ecto-sp13_S_contig10506.484.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1347bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10506:1993..5715- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |