mRNA_Ecto-sp13_S_contig1050.477.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1050.477.1
Unique NamemRNA_Ecto-sp13_S_contig1050.477.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1050.477.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1050contigEcto-sp13_S_contig1050:2698..3769 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size259
Hectar predicted targeting categoryother localisation
Exons2
Cds size189
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462535.1379004-UTR-Ecto-sp13_S_contig1050:2697..27671681462535.1379004-UTR-Ecto-sp13_S_contig1050:2697..2767Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1050 2698..2767 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462535.1492782-CDS-Ecto-sp13_S_contig1050:2767..28761681462535.1492782-CDS-Ecto-sp13_S_contig1050:2767..2876Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1050 2768..2876 +
1681462535.1588626-CDS-Ecto-sp13_S_contig1050:3689..37691681462535.1588626-CDS-Ecto-sp13_S_contig1050:3689..3769Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1050 3690..3769 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1050.477.1prot_Ecto-sp13_S_contig1050.477.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1050 2768..3769 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1050.477.1

>prot_Ecto-sp13_S_contig1050.477.1 ID=prot_Ecto-sp13_S_contig1050.477.1|Name=mRNA_Ecto-sp13_S_contig1050.477.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=63bp
MGHQTLTPFSGVDPEMLPHSMMMAFCMAYWFFSKSTLTPTGITLPHPLAS
ALMHPRNALAPVH
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mRNA from alignment at Ecto-sp13_S_contig1050:2698..3769+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1050.477.1 ID=mRNA_Ecto-sp13_S_contig1050.477.1|Name=mRNA_Ecto-sp13_S_contig1050.477.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1072bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1050:2698..3769+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGGGATCGGGATCTGGATCTGGATCGTGATCCGCCAACCCCGCGCGTGAA
CAACACACACACAACGAACAATGGGTCACCAAACCCTCACGCCGTTCTCT
GGAGTGGACCCTGAAATGCTGCCGCACAGCATGATGATGGCCTTCTGCAT
GGCATACTGGTTCTTCTCTAAGTCTACATGTACGTATCTGTCAAATCAAT
GATGAGTTCGTTTTGATCTGATCTAGACAGCAGTATTACATACTAGGTAT
TAACCGATTCAGTAAGATACCGACAGGTAAATGTCGTAAGTCTATGTGTT
CCTCCTACGTTAGAATTAAACATAGACAGGTGGGTGGCAAAAGTGATGAT
TGACCCATCTATCTACCCGTAGCAAGCGTTGTACATTGATTGACGTACGT
ACGTACGTATGTACGTTCACAGGTAGACAGCAGTGAATTGTATTGCGTGT
CGCATTTTTTTTCCAAAAGTCAAAAGGATGGGTGCAGGCTAAAACTACAG
AAGTCTAACTGTGTAGTATGCATGCTGTTCACCTTGCACCATGTGGTGTG
CAATGGTAAACAGTAGTTATAATAGTGCACACTGCGCTTCCTTGTGTGAA
CGCATGCTTCAGACAGGCTCTTTTTGGGACACAGAGACACTAATTATTAT
CGTTAGTCCCGTACCGGACGTGGTTGTTGTTGTATTGTAACCACCGAGCA
TATCAGCAGCAGCACCACATAAAAAAGCATTCATTTGTGTGTGTACAAAG
ACAAAGAAGTTACGGGGGATGGATGCCACAGCATCGAAAGGGTGGGGGGT
GGCAACAGCAGTACCTACCGCGAAAAATGTTTGCAAAAAAATGTTGAATT
TTGGACAACGCTCGGAAGGCAACAACTGCTTGCTGAAGTACTTGTATTGC
TTCATCATGCAAATGCTTGCGAAGACTAACCAGTACTTTAATCTGCATCA
TCCATAATTCTCTCCCACTGCTTTGTTGTTTGTTGCCAACAGTGACTCCG
ACCGGGATCACCTTGCCACACCCGCTGGCTTCGGCTTTGATGCATCCACG
AAACGCGTTGGCTCCCGTCCAT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1050:2698..3769+

>mRNA_Ecto-sp13_S_contig1050.477.1 ID=mRNA_Ecto-sp13_S_contig1050.477.1|Name=mRNA_Ecto-sp13_S_contig1050.477.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=189bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1050:2698..3769+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGTCACCAAACCCTCACGCCGTTCTCTGGAGTGGACCCTGAAATGCT
GCCGCACAGCATGATGATGGCCTTCTGCATGGCATACTGGTTCTTCTCTA
AGTCTACATTGACTCCGACCGGGATCACCTTGCCACACCCGCTGGCTTCG
GCTTTGATGCATCCACGAAACGCGTTGGCTCCCGTCCAT
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