mRNA_Ecto-sp13_S_contig105.475.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig105.475.1
Unique NamemRNA_Ecto-sp13_S_contig105.475.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig105.475.1 vs. uniprot
Match: D8LQG0_ECTSI (Guanylate cyclase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQG0_ECTSI)

HSP 1 Score: 156 bits (395), Expect = 2.360e-48
Identity = 77/82 (93.90%), Postives = 80/82 (97.56%), Query Frame = 1
Query:    1 MIIKSSNERFKRKTGVGIATGHMCTGIIGKPNFRSEYALAGDVVNLAARLAAASEKGKNGVLCDEATLQSLTGEVCKGRPYP 246
            MI+ SS+ERFKRKTGVGIATGHMCTGIIGKPNFRSEYALAGDVVNLAARLAAASEKG+NGVLCDEATLQSLTGEVCKGR YP
Sbjct:    1 MIVMSSDERFKRKTGVGIATGHMCTGIIGKPNFRSEYALAGDVVNLAARLAAASEKGENGVLCDEATLQSLTGEVCKGRRYP 82          
BLAST of mRNA_Ecto-sp13_S_contig105.475.1 vs. uniprot
Match: A0A835YYC7_9STRA (Guanylate cyclase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYC7_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 9.140e-14
Identity = 39/70 (55.71%), Postives = 54/70 (77.14%), Query Frame = 1
Query:    7 IKSSNER-FKRKTGVGIATGHMCTGIIGKPNF-RSEYALAGDVVNLAARLAAASEKGKNG-VLCDEATLQ 207
            IK + +R F+ + GVGIA+G +C G+IGK +F R EYALAGD+VNLAARLAA ++  + G VLCD+ T++
Sbjct:   33 IKETAKRDFRHRVGVGIASGQICCGLIGKADFSRCEYALAGDMVNLAARLAARADTEREGCVLCDQYTIE 102          
BLAST of mRNA_Ecto-sp13_S_contig105.475.1 vs. uniprot
Match: A0A7S1SUT1_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SUT1_9CHLO)

HSP 1 Score: 53.9 bits (128), Expect = 1.760e-6
Identity = 26/50 (52.00%), Postives = 32/50 (64.00%), Query Frame = 1
Query:   49 GIATGHMCTGIIGKPNFRSEYALAGDVVNLAARLAAASEKGKNGVLCDEA 198
            GI TGH   G++G P  R EYA+ GD+VN AARLA  + K    +LC EA
Sbjct:   79 GITTGHCFCGLVGDPKIRCEYAVMGDIVNTAARLAGGAAKRGESILCAEA 128          
BLAST of mRNA_Ecto-sp13_S_contig105.475.1 vs. uniprot
Match: D2VCL0_NAEGR (Uncharacterized protein FM146 n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2VCL0_NAEGR)

HSP 1 Score: 52.0 bits (123), Expect = 8.530e-6
Identity = 30/61 (49.18%), Postives = 37/61 (60.66%), Query Frame = 1
Query:   37 KTGVGIATGHMCTGIIGKPNFRSEYALAGDVVNLAARLAAASEKGKNGVLCDEATLQSLTG 219
            K G+GIA+G    G +G   +R E+ + GD VNLAARL   SEK    VLC+E T Q L G
Sbjct:  414 KFGLGIASGKCFIGNVGS-EYRKEFTIYGDKVNLAARLMKESEKNDGVVLCEEETAQMLKG 473          
BLAST of mRNA_Ecto-sp13_S_contig105.475.1 vs. uniprot
Match: D7FJ46_ECTSI (Guanylyl cyclase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ46_ECTSI)

HSP 1 Score: 51.2 bits (121), Expect = 1.590e-5
Identity = 31/65 (47.69%), Postives = 39/65 (60.00%), Query Frame = 1
Query:    7 IKSSNERFKRKTGVGIATGHMCTGIIGKPNFRSEYALAGDVVNLAARLAAASEKGKNGVLCDEAT 201
            I +S +    KT +GI TGH   G +G    RSEYA+ GDV+NLAARL     K K  ++CDE T
Sbjct:  569 IHASLQVRDMKTSMGITTGHALCGRMGG-KIRSEYAMVGDVINLAARLMG---KAKGRIVCDEVT 629          
BLAST of mRNA_Ecto-sp13_S_contig105.475.1 vs. uniprot
Match: A0A7S1T3H5_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1T3H5_9CHLO)

HSP 1 Score: 50.1 bits (118), Expect = 2.860e-5
Identity = 26/59 (44.07%), Postives = 36/59 (61.02%), Query Frame = 1
Query:   49 GIATGHMCTGIIGKPNFRSEYALAGDVVNLAARLAAASEKGKNGVLCDEATLQSLTGEV 225
            G+++G    GIIGKP+ R EYA+ GDVVN AARLA A+      +LC +   Q    ++
Sbjct:   42 GVSSGMCFCGIIGKPDIRCEYAVMGDVVNTAARLAVAAAARGVRLLCTDVAAQGARSDL 100          
BLAST of mRNA_Ecto-sp13_S_contig105.475.1 vs. uniprot
Match: A0A7W1VRV3_9BACT (Adenylate/guanylate cyclase domain-containing protein n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A7W1VRV3_9BACT)

HSP 1 Score: 50.1 bits (118), Expect = 3.960e-5
Identity = 30/85 (35.29%), Postives = 45/85 (52.94%), Query Frame = 1
Query:   19 NERFKRKTGVGIATGHMCTGIIGKPNFRSEYALAGDVVNLAARLAAASEKGKNGVLC---------DEATLQSLTGEVCKGRPYP 246
            ++R K   GVG+  G +  G IG P+FR E+ + GD VNLAARL +A+++ K  +L          D    +S+     KG+  P
Sbjct:  520 DDRIKLSIGVGVNHGEVVVGNIGHPDFRMEFTVLGDGVNLAARLESATKQFKTDLLVGQEAEKLTRDHFIFRSVGAIAFKGKTQP 604          
BLAST of mRNA_Ecto-sp13_S_contig105.475.1 vs. uniprot
Match: A0A061RLZ7_9CHLO (Guanylate cyclase n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RLZ7_9CHLO)

HSP 1 Score: 50.1 bits (118), Expect = 3.990e-5
Identity = 24/55 (43.64%), Postives = 35/55 (63.64%), Query Frame = 1
Query:   49 GIATGHMCTGIIGKPNFRSEYALAGDVVNLAARLAAASEKGKNGVLCDEATLQSL 213
            G+ATG    G++G P  R EYA+ GD VN AARLAA + K    +LC ++  +++
Sbjct:  188 GLATGSCYCGLVGNPRTRCEYAVMGDTVNTAARLAAHAAKTNQALLCGQSVQEAV 242          
BLAST of mRNA_Ecto-sp13_S_contig105.475.1 vs. uniprot
Match: A0A061RZX5_9CHLO (Guanylate cyclase n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RZX5_9CHLO)

HSP 1 Score: 50.1 bits (118), Expect = 4.080e-5
Identity = 24/55 (43.64%), Postives = 35/55 (63.64%), Query Frame = 1
Query:   49 GIATGHMCTGIIGKPNFRSEYALAGDVVNLAARLAAASEKGKNGVLCDEATLQSL 213
            G+ATG    G++G P  R EYA+ GD VN AARLAA + K    +LC ++  +++
Sbjct:  545 GLATGSCYCGLVGNPRTRCEYAVMGDTVNTAARLAAHAAKTNQALLCGQSVQEAV 599          
BLAST of mRNA_Ecto-sp13_S_contig105.475.1 vs. uniprot
Match: A0A061RBI5_9CHLO (Guanylyl cyclase n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RBI5_9CHLO)

HSP 1 Score: 49.7 bits (117), Expect = 5.370e-5
Identity = 24/55 (43.64%), Postives = 35/55 (63.64%), Query Frame = 1
Query:   49 GIATGHMCTGIIGKPNFRSEYALAGDVVNLAARLAAASEKGKNGVLCDEATLQSL 213
            G+A+G+   G++G P  R EYA+ GD VN AARLA A+ K    ++C E+   +L
Sbjct:  481 GLASGNCYCGLVGSPEIRCEYAVMGDTVNTAARLAGAAHKMGRPIICAESLRAAL 535          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig105.475.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D8LQG0_ECTSI2.360e-4893.90Guanylate cyclase domain-containing protein n=1 Ta... [more]
A0A835YYC7_9STRA9.140e-1455.71Guanylate cyclase domain-containing protein n=1 Ta... [more]
A0A7S1SUT1_9CHLO1.760e-652.00Hypothetical protein (Fragment) n=1 Tax=Tetraselmi... [more]
D2VCL0_NAEGR8.530e-649.18Uncharacterized protein FM146 n=1 Tax=Naegleria gr... [more]
D7FJ46_ECTSI1.590e-547.69Guanylyl cyclase n=1 Tax=Ectocarpus siliculosus Ta... [more]
A0A7S1T3H5_9CHLO2.860e-544.07Hypothetical protein (Fragment) n=1 Tax=Tetraselmi... [more]
A0A7W1VRV3_9BACT3.960e-535.29Adenylate/guanylate cyclase domain-containing prot... [more]
A0A061RLZ7_9CHLO3.990e-543.64Guanylate cyclase n=1 Tax=Tetraselmis sp. GSL018 T... [more]
A0A061RZX5_9CHLO4.080e-543.64Guanylate cyclase n=1 Tax=Tetraselmis sp. GSL018 T... [more]
A0A061RBI5_9CHLO5.370e-543.64Guanylyl cyclase n=1 Tax=Tetraselmis sp. GSL018 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig105contigEcto-sp13_S_contig105:37456..37868 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size249
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionAdenylyl cyclase class-3/4/guanylyl cyclase
Ec32 orthologEc-10_005510.1
Cds size249
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462535.0979645-CDS-Ecto-sp13_S_contig105:37455..375561681462535.0979645-CDS-Ecto-sp13_S_contig105:37455..37556Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig105 37456..37556 +
1681462535.1084497-CDS-Ecto-sp13_S_contig105:37720..378681681462535.1084497-CDS-Ecto-sp13_S_contig105:37720..37868Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig105 37721..37868 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig105.475.1prot_Ecto-sp13_S_contig105.475.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig105 37456..37868 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig105.475.1

>prot_Ecto-sp13_S_contig105.475.1 ID=prot_Ecto-sp13_S_contig105.475.1|Name=mRNA_Ecto-sp13_S_contig105.475.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=83bp
MIIKSSNERFKRKTGVGIATGHMCTGIIGKPNFRSEYALAGDVVNLAARL
AAASEKGKNGVLCDEATLQSLTGEVCKGRPYP*
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mRNA from alignment at Ecto-sp13_S_contig105:37456..37868+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig105.475.1 ID=mRNA_Ecto-sp13_S_contig105.475.1|Name=mRNA_Ecto-sp13_S_contig105.475.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=413bp|location=Sequence derived from alignment at Ecto-sp13_S_contig105:37456..37868+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATCATTAAGTCCTCCAATGAGCGGTTCAAGAGGAAGACTGGTGTCGG GATCGCCACGGGTCACATGTGCACGGGAATCATCGGAAAGCCGAACTTCA GGTGAGGCATAGAGGCCCTGAAAAAATCCGCGGTGTACCTTGTGCTGTCG GCCTCGTGGTTGTAGCCGTGCATTGCCGTGTGAGGGACCACGCACACACG GGCCACCTTACGGCCCACCGTGTGTTCGCCCGCGCACGCGCACCGCAACC TTCAACAAACATCAGGTCAGAGTATGCCCTAGCCGGGGACGTGGTCAACC TGGCGGCGAGGCTTGCCGCGGCATCGGAGAAGGGAAAAAACGGCGTCCTC TGCGACGAAGCAACGCTACAGTCTCTGACCGGCGAGGTATGCAAGGGCCG TCCATACCCATGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig105:37456..37868+

>mRNA_Ecto-sp13_S_contig105.475.1 ID=mRNA_Ecto-sp13_S_contig105.475.1|Name=mRNA_Ecto-sp13_S_contig105.475.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=249bp|location=Sequence derived from alignment at Ecto-sp13_S_contig105:37456..37868+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATCATTAAGTCCTCCAATGAGCGGTTCAAGAGGAAGACTGGTGTCGG
GATCGCCACGGGTCACATGTGCACGGGAATCATCGGAAAGCCGAACTTCA
GGTCAGAGTATGCCCTAGCCGGGGACGTGGTCAACCTGGCGGCGAGGCTT
GCCGCGGCATCGGAGAAGGGAAAAAACGGCGTCCTCTGCGACGAAGCAAC
GCTACAGTCTCTGACCGGCGAGGTATGCAAGGGCCGTCCATACCCATGA
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