mRNA_Ecto-sp13_S_contig105.474.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig105.474.1
Unique NamemRNA_Ecto-sp13_S_contig105.474.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig105.474.1 vs. uniprot
Match: D8LQF9_ECTSI (Guanylyl cyclase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQF9_ECTSI)

HSP 1 Score: 576 bits (1485), Expect = 1.460e-202
Identity = 304/364 (83.52%), Postives = 309/364 (84.89%), Query Frame = 1 
Query:  580 MDAALLFVDISGYTSSMEMFAQQGAQGIEKFWKMFNAYFCDLLDIIQGTGGDIDCFAGDAILIVYETERIWKRTGESVRKCINTLDGTQPTKLCLATMAAAQCGGRLLNKLSPYNFSDGASESSLTLHGSIGAGSLRTVNIGGTTAQAGSSFATFVCGGVFEQLAIAHDLSRKNEICLSGEAVALTEYWLDLWDHAEHETCKILKGVKEFGDGEQQQQPQPESGPLETQASTSAAEGAKPPGVLQGLNPAKATMPSLYTSVPKDTNVCTRLNMTAHEYDGLTEDLKGFISSSVLDKMESVRGDAASGIALGELRQGTVGFVKFDIKDINSSACANPENGIKEVAQVAMMGFREVLIAGGYVNKV 1671
            MDAALLFVDISGYT+SMEMFAQQGAQGIEKFWKMFNAYFCDLLDIIQGTGGDIDCFAGDAILIVYETERIWKRTGESVRKCINTLDGTQPTKLCLATMAAAQCGGRLLNKLSPYNFSDG +ES+LTLHGSIG GSLRTVNIGGTTAQAGSSFATFVCGGVFEQLAIAHDLSRKNE+CLSGEA                                                STSAAE AKPPGVLQGLNPAKATMPSLYTSV KDTNVCTRLNMTA EYDGLTEDLK FI SSVLDKMESVRGDAASGIALGELRQGTVGFVKFDIKDINSSACANPE+GIKEVAQVAMMGFREVLIAGGYVNKV
Sbjct:    1 MDAALLFVDISGYTASMEMFAQQGAQGIEKFWKMFNAYFCDLLDIIQGTGGDIDCFAGDAILIVYETERIWKRTGESVRKCINTLDGTQPTKLCLATMAAAQCGGRLLNKLSPYNFSDGVNESTLTLHGSIGVGSLRTVNIGGTTAQAGSSFATFVCGGVFEQLAIAHDLSRKNEVCLSGEA------------------------------------------------STSAAEEAKPPGVLQGLNPAKATMPSLYTSVSKDTNVCTRLNMTAPEYDGLTEDLKSFIPSSVLDKMESVRGDAASGIALGELRQGTVGFVKFDIKDINSSACANPEDGIKEVAQVAMMGFREVLIAGGYVNKV 316
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BLAST of mRNA_Ecto-sp13_S_contig105.474.1 vs. uniprot
Match: A0A835Z8Z0_9STRA (Guanylate cyclase domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8Z0_9STRA)

HSP 1 Score: 115 bits (288), Expect = 5.970e-26
Identity = 76/195 (38.97%), Postives = 104/195 (53.33%), Query Frame = 1 
Query:  583 DAALLFVDISGYTSSMEMFAQQGAQGIEKFWKMFNAYFCDLLDIIQGTGGDIDCFAGDAILIVYETERIWKRT-GESVRKCINTLDGTQPT----KLCLATMAAAQCGGRLLNKLSPY-----NFSDGASESSL--TLHGSIGAGSLRTVNI--GGTTAQAGSSFATFVCGGVFEQLAIAHDLSRKNEICLSGEA 1125
            D ALLFVDISG+TSSME FA QG++G E+FW+  + YF  LL  I   GGD++CFAGDA+++ +  E +     G  +      L G   +    +L +AT  A      +L  +SPY     +F     +  L  TLHGS+GAG L  + +    T   A      +VCG V  QLA AH +S  N+  LS +A
Sbjct:    2 DCALLFVDISGFTSSMERFATQGSRGTERFWRAISGYFGSLLREIYSRGGDVECFAGDAMMVSFGAEEVASHPIGALILARHLALHGDVQSEADARLAVATKVAVDAAAAMLRTMSPYTRVERDFPGPGQDMQLLLTLHGSVGAGGLTALELIHADTGETARGKRWHYVCGPVIGQLARAHAISAANDCVLSKQA 196
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BLAST of mRNA_Ecto-sp13_S_contig105.474.1 vs. uniprot
Match: A0A090AHP6_9GAMM (Adenylate/guanylate cyclase n=1 Tax=Thioploca ingrica TaxID=40754 RepID=A0A090AHP6_9GAMM)

HSP 1 Score: 99.4 bits (246), Expect = 5.880e-18
Identity = 71/232 (30.60%), Postives = 118/232 (50.86%), Query Frame = 1 
Query:  523 LVVQRRIGKPGKPRYAT-ECMDAALLFVDISGYTSSMEMFAQQGAQGIEKFWKMFNAYFCDLLDIIQGTGGDIDCFAGDAILIVYETERIWKRTGESVRKCINTLDGTQPTKLCLATMAAAQCGGRLLNKLSPYNFSDGASESSLTLHGSIGAGSLRTVNIGGTTAQAGSSFATFVCGGVFEQLAIAHDLSRKNEICLSGEAVALTEYWLDLWDHAEHETCK----ILKGVK 1203
            L+++R    P  P   T E +  A+LF D+SG+T+  E  A+QGA G E+  ++ N YF  L+ +I   GGD+  FAGDA++ ++ T          +    +  + +   +L L T  AAQCG  +   L  Y+  +   + +L+LH SIGAG +  +++GG   +    +   V G    Q+ +A   ++ NE+ LS +A      W  L + A+ E+C+     L G+K
Sbjct:   21 LMLRRFAHDPRLPTEPTVEHLFGAVLFADMSGFTTLAETLAEQGAAGAEQLTQIINNYFSQLIGVIHAHGGDVVKFAGDALVALWLTAEETSLKNSLISSWQSPQEDSHSEQLTLVTHRAAQCGLAIQETLKDYHIYN---QMTLSLHVSIGAGEIALLHLGGVFGR----WELLVTGNPLVQVGLADKQAKPNEVLLSPQA------WQYLPERAQVESCQGGYVRLVGIK 239
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BLAST of mRNA_Ecto-sp13_S_contig105.474.1 vs. uniprot
Match: A0A349JPQ6_9CYAN (Uncharacterized protein n=1 Tax=Microcoleaceae bacterium UBA11344 TaxID=2055792 RepID=A0A349JPQ6_9CYAN)

HSP 1 Score: 96.7 bits (239), Expect = 2.640e-17
Identity = 67/183 (36.61%), Postives = 93/183 (50.82%), Query Frame = 1 
Query:  568 ATECMDAALLFVDISGYTSSMEMFAQQGAQGIEKFWKMFNAYFCDLLDIIQGTGGDIDCFAGDAILIVYETERIWKRTGESVRKCINTLDGTQPTKLCLATMAAAQCGGRLLNKLSPYNFSDGASESSLTLHGSIGAGSLRTVNIGGTTAQAGSSFATFVCGGVFEQLAIAHDLSRKNEICLS 1116
            A+   +AA+LFVDISG+T+  E  AQ+G+ G+E+     NAYF  L+++I    GDI  FAGDA+L ++  E +                      L LAT  AAQC   +LN L  Y     A+ + L LH  IGAG L+   IGG   +    +  FV G    Q+A+A   +   E+CLS
Sbjct:   31 ASSSFEAAVLFVDISGFTALTERLAQKGSIGVEELTTHLNAYFGQLIELIIAHKGDIVKFAGDAMLAIWPAESL---------------------SLDLATYCAAQCALAILNDLGEYQ----AANAQLQLHIGIGAGELKEFYIGGMNGR----WEYFVAGEPIAQVALAETAAGIGEVCLS 184
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BLAST of mRNA_Ecto-sp13_S_contig105.474.1 vs. uniprot
Match: A0A835YYD2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYD2_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 2.740e-17
Identity = 36/65 (55.38%), Postives = 50/65 (76.92%), Query Frame = 1 
Query:  604 DISGYTSSMEMFAQQGAQGIEKFWKMFNAYFCDLLDIIQGTGGDIDCFAGDAILIVYETERIWKR 798
            D+SG+T+ ME FA  G  GIEKFW + N YF +LL  I+GTGGD++CFAGDA+++VY+ + I +R
Sbjct:    2 DVSGFTACMERFASHGPAGIEKFWTIINGYFNELLSYIRGTGGDVECFAGDALMVVYDAKGIARR 66
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BLAST of mRNA_Ecto-sp13_S_contig105.474.1 vs. uniprot
Match: A0A2T1EXD2_9CYAN (Uncharacterized protein n=1 Tax=filamentous cyanobacterium Phorm 46 TaxID=2107705 RepID=A0A2T1EXD2_9CYAN)

HSP 1 Score: 91.7 bits (226), Expect = 1.550e-15
Identity = 64/178 (35.96%), Postives = 89/178 (50.00%), Query Frame = 1 
Query:  583 DAALLFVDISGYTSSMEMFAQQGAQGIEKFWKMFNAYFCDLLDIIQGTGGDIDCFAGDAILIVYETERIWKRTGESVRKCINTLDGTQPTKLCLATMAAAQCGGRLLNKLSPYNFSDGASESSLTLHGSIGAGSLRTVNIGGTTAQAGSSFATFVCGGVFEQLAIAHDLSRKNEICLS 1116
            +AA+LFVDISG+T+  E  AQ+G+ G+E+     NAYF  L+++I    GDI  FAGDA+L ++ TE +                      L  AT  AAQC   +LN L  Y     A+ + L LH  IGAG L+   IGG   +    +   V G    Q+ +A   +   E+CLS
Sbjct:   36 EAAVLFVDISGFTALTERLAQKGSIGVEELTTHLNAYFGQLIELILAHNGDIIKFAGDAMLAIWPTESM---------------------SLGSATYCAAQCALAILNDLGKYQ----AANAELRLHMGIGAGELQEFYIGGLNGR----WEYLVAGEPIAQVGLAETAAGIGEVCLS 184
[Close]
BLAST of mRNA_Ecto-sp13_S_contig105.474.1 vs. uniprot
Match: A0A2T1G4V0_9CYAN (Uncharacterized protein n=1 Tax=filamentous cyanobacterium Phorm 6 TaxID=2107706 RepID=A0A2T1G4V0_9CYAN)

HSP 1 Score: 91.7 bits (226), Expect = 1.550e-15
Identity = 64/178 (35.96%), Postives = 89/178 (50.00%), Query Frame = 1 
Query:  583 DAALLFVDISGYTSSMEMFAQQGAQGIEKFWKMFNAYFCDLLDIIQGTGGDIDCFAGDAILIVYETERIWKRTGESVRKCINTLDGTQPTKLCLATMAAAQCGGRLLNKLSPYNFSDGASESSLTLHGSIGAGSLRTVNIGGTTAQAGSSFATFVCGGVFEQLAIAHDLSRKNEICLS 1116
            +AA+LFVDISG+T+  E  AQ+G+ G+E+     NAYF  L+++I    GDI  FAGDA+L ++ TE +                      L  AT  AAQC   +LN L  Y     A+ + L LH  IGAG L+   IGG   +    +   V G    Q+ +A   +   E+CLS
Sbjct:   36 EAAVLFVDISGFTALTERLAQKGSIGVEELTTHLNAYFGQLIELILAHNGDIIKFAGDAMLAIWPTESM---------------------SLGSATYCAAQCALAILNDLGKYQ----AANAELRLHMGIGAGELQEFYIGGLNGR----WEYLVAGEPIAQVGLAETAAGIGEVCLS 184
[Close]
BLAST of mRNA_Ecto-sp13_S_contig105.474.1 vs. uniprot
Match: A0A7S4HKQ7_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4HKQ7_9EUKA)

HSP 1 Score: 84.3 bits (207), Expect = 5.490e-15
Identity = 68/200 (34.00%), Postives = 95/200 (47.50%), Query Frame = 1 
Query:  586 AALLFVDISGYTSSMEMFAQQGAQGIEKFWKMFNAYFCDLLDIIQGTGGDIDCFAGDAILIVYETERIWKRTGESVRKCINTLDGTQPTKLCLATMAAAQCGGRLLNKLSPYNFSDGASESSLTLHGSIGAGSLRTVNIGGTTAQAGSSFATFVCGGVFEQLAIAHDLSRKNEICLSGEAVALTEYWLDLWDHAEHETCK 1185
            AA+LF+DISG+TS  E  AQ GA G E   K  N+YF  L+  +   GGD+  FAGDA++ ++         GE+         G+    L   T+ A QCG  +  +L  Y+ ++G S   LTLH  +G+G L ++  G        S+   V G    QL  A D S+  E+ +S      TE W     H   E CK
Sbjct:    7 AAILFLDISGFTSLNERLAQLGAAGPELVSKHINSYFASLIKAVSEHGGDVLKFAGDALICMW--------AGET--------PGSSMDNLTSLTLRAIQCGFDIQTRLDKYDSNEGFS---LTLHIGVGSGELLSLWAGSK-----GSWEYLVSGEPLAQLRTAVDNSKTGEVVIS------TESW-----HLVQEYCK 171
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BLAST of mRNA_Ecto-sp13_S_contig105.474.1 vs. uniprot
Match: A0A061S848_9CHLO (Guanylate cyclase n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061S848_9CHLO)

HSP 1 Score: 89.0 bits (219), Expect = 1.180e-14
Identity = 63/194 (32.47%), Postives = 101/194 (52.06%), Query Frame = 1 
Query:  559 PRYATECMDAALLFVDISGYTSSMEMFAQQGAQGIEKFWKMFNAYFCDLLDIIQGTGGDIDCFAGDAILIVYETERIWKRTGESVRKCINTLDGTQPTKLCLATMAAAQCGGRLLNKLSPYNFSDGASESSLTLHGSIGAGSLRTVNIGGTTAQAGSSFATFVCGGVFEQLAIAHDLSRKNEICLSGEAVALTE 1140
            P  A   ++AA L VD+SG+T   E +A++G +G+E+F  + ++ F  L  + +   GD+DCFAGDA++IV+ET +  +  G S   C       + +    A   A  C    + ++S    S GA   SL+LHG+I AGS+  V  GG   +   +F   + G   ++L  A   S K+E+ L+  A  L +
Sbjct:   61 PEPAPRRLEAAFLLVDVSGFTKLSESYAREGIEGVEQFSLLVSSVFSRLAYLAELHRGDLDCFAGDAMVIVFETSKFHETQGASDSTC-----DIERSNQEAAVQEALAC----VRQMSSEAKSFGAG-GSLSLHGAISAGSVYAVECGGRHVRRSEAF---LLGEPLQELGRALKQSAKSEVVLAPSASVLLD 241
[Close]
BLAST of mRNA_Ecto-sp13_S_contig105.474.1 vs. uniprot
Match: A0A061QVT6_9CHLO (Guanylyl cyclase n=2 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061QVT6_9CHLO)

HSP 1 Score: 87.4 bits (215), Expect = 2.700e-14
Identity = 63/186 (33.87%), Postives = 97/186 (52.15%), Query Frame = 1 
Query:  586 AALLFVDISGYTSSMEMFAQQGAQGIEKFWKMFNAYFCDLLDIIQGTGGDIDCFAGDAILIVY-ETERIWKRTGESV---RKCINTLDGTQPTKLCLATMA--AAQCGGRLLNKLSPYNFSDGASESSLTLHGSIGAGSLRTVNIGGTTAQAGSSFATFVCGGVFEQLAIAHDLSRKNEICLSGEA 1125
            A  L +D+SG+T+  E F++ G +  E+F  + + +F    +II   GGDIDCFAGDA+LI++  T  + K+  + +   R   N+  G       L   A  A QC   +  +L+ Y  S G     LT+H ++  G + +V  GG+ A+ G +F   V G    +L  A DLSR +EI L+  A
Sbjct:   65 AVTLLLDVSGFTALSEKFSEGGTKSFEEFSLLLSGFFARTCEIIFSYGGDIDCFAGDALLILFPSTIAVHKKRLDKLLLPRDSRNSSGGASVLNSNLIEPATRALQCAFAVSRELNEYEVSPGLPR--LTIHAAMACGDIYSVECGGSQARRGEAF---VLGRPLCELRKAVDLSRSSEIVLTAMA 245
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig105.474.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQF9_ECTSI1.460e-20283.52Guanylyl cyclase n=1 Tax=Ectocarpus siliculosus Ta... [more]
A0A835Z8Z0_9STRA5.970e-2638.97Guanylate cyclase domain-containing protein (Fragm... [more]
A0A090AHP6_9GAMM5.880e-1830.60Adenylate/guanylate cyclase n=1 Tax=Thioploca ingr... [more]
A0A349JPQ6_9CYAN2.640e-1736.61Uncharacterized protein n=1 Tax=Microcoleaceae bac... [more]
A0A835YYD2_9STRA2.740e-1755.38Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A2T1EXD2_9CYAN1.550e-1535.96Uncharacterized protein n=1 Tax=filamentous cyanob... [more]
A0A2T1G4V0_9CYAN1.550e-1535.96Uncharacterized protein n=1 Tax=filamentous cyanob... [more]
A0A7S4HKQ7_9EUKA5.490e-1534.00Hypothetical protein (Fragment) n=1 Tax=Vannella s... [more]
A0A061S848_9CHLO1.180e-1432.47Guanylate cyclase n=1 Tax=Tetraselmis sp. GSL018 T... [more]
A0A061QVT6_9CHLO2.700e-1433.87Guanylyl cyclase n=2 Tax=Tetraselmis sp. GSL018 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig105contigEcto-sp13_S_contig105:29444..36991 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeBacteria
Stop0
Start1
Seed ortholog score82.4
Seed ortholog evalue7.3e-13
Seed eggNOG ortholog329726.AM1_2452
Model size1689
KEGG rclassRC00295
KEGG koko:K01768
KEGG ReactionR00089,R00434
KEGG Pathwayko00230,ko02025,ko04113,ko04213,map00230,map02025,map04113,map04213
KEGG ModuleM00695
Hectar predicted targeting categoryother localisation
Exons8
EggNOG free text desc.SMART Adenylyl cyclase class-3 4 guanylyl cyclase
EggNOG OGs1G335@1117,COG0457@1,COG0457@2,COG2114@1,COG2114@2,COG3899@1,COG3899@2
Ec32 ortholog descriptionguanylyl cyclase
Ec32 orthologEc-10_005500.1
EC4.6.1.1
Cds size1689
COG Functional cat.T
Best tax levelCyanobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig105.474.1prot_Ecto-sp13_S_contig105.474.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig105 29444..36991 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462534.9803638-CDS-Ecto-sp13_S_contig105:29443..298661681462534.9803638-CDS-Ecto-sp13_S_contig105:29443..29866Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig105 29444..29866 +
1681462534.9924195-CDS-Ecto-sp13_S_contig105:31816..321131681462534.9924195-CDS-Ecto-sp13_S_contig105:31816..32113Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig105 31817..32113 +
1681462535.0017922-CDS-Ecto-sp13_S_contig105:32574..328741681462535.0017922-CDS-Ecto-sp13_S_contig105:32574..32874Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig105 32575..32874 +
1681462535.01197-CDS-Ecto-sp13_S_contig105:33881..339831681462535.01197-CDS-Ecto-sp13_S_contig105:33881..33983Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig105 33882..33983 +
1681462535.0215268-CDS-Ecto-sp13_S_contig105:34542..347521681462535.0215268-CDS-Ecto-sp13_S_contig105:34542..34752Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig105 34543..34752 +
1681462535.0352187-CDS-Ecto-sp13_S_contig105:35560..357521681462535.0352187-CDS-Ecto-sp13_S_contig105:35560..35752Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig105 35561..35752 +
1681462535.0464318-CDS-Ecto-sp13_S_contig105:36290..364341681462535.0464318-CDS-Ecto-sp13_S_contig105:36290..36434Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig105 36291..36434 +
1681462535.059043-CDS-Ecto-sp13_S_contig105:36970..369911681462535.059043-CDS-Ecto-sp13_S_contig105:36970..36991Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig105 36971..36991 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig105.474.1

>prot_Ecto-sp13_S_contig105.474.1 ID=prot_Ecto-sp13_S_contig105.474.1|Name=mRNA_Ecto-sp13_S_contig105.474.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=563bp
MVLFFSCACAPHVQDDTSLETSDQLQGNSGTDSKEKIIDSAAVVPSPEGA
QEGRKASPTHNGSDDPPRESKFRAFEKADVSPVPDSKPEASLLGGSILEE
NSRTGQTASAGAPTRNFDGVALGSSAFRRLGATSPRRSWNSLSAFSGAEN
SSVPREHRHLVALAALLPQRVIENLVVQRRIGKPGKPRYATECMDAALLF
VDISGYTSSMEMFAQQGAQGIEKFWKMFNAYFCDLLDIIQGTGGDIDCFA
GDAILIVYETERIWKRTGESVRKCINTLDGTQPTKLCLATMAAAQCGGRL
LNKLSPYNFSDGASESSLTLHGSIGAGSLRTVNIGGTTAQAGSSFATFVC
GGVFEQLAIAHDLSRKNEICLSGEAVALTEYWLDLWDHAEHETCKILKGV
KEFGDGEQQQQPQPESGPLETQASTSAAEGAKPPGVLQGLNPAKATMPSL
YTSVPKDTNVCTRLNMTAHEYDGLTEDLKGFISSSVLDKMESVRGDAASG
IALGELRQGTVGFVKFDIKDINSSACANPENGIKEVAQVAMMGFREVLIA
GGYVNKVIMDEKG
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mRNA from alignment at Ecto-sp13_S_contig105:29444..36991+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig105.474.1 ID=mRNA_Ecto-sp13_S_contig105.474.1|Name=mRNA_Ecto-sp13_S_contig105.474.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=7548bp|location=Sequence derived from alignment at Ecto-sp13_S_contig105:29444..36991+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGTTGTTTTTCAGCTGTGCGTGCGCACCACATGTGCAAGATGACAC
CTCGCTTGAAACATCGGATCAACTCCAAGGGAACTCTGGCACCGACTCTA
AGGAAAAGATCATCGATTCCGCCGCGGTGGTCCCTTCTCCGGAAGGAGCA
CAGGAGGGCCGTAAAGCTTCGCCGACCCACAACGGTTCGGACGACCCACC
ACGAGAATCCAAATTTCGTGCATTTGAGAAGGCCGACGTCAGCCCTGTTC
CCGATTCCAAGCCGGAAGCCTCCCTTTTAGGAGGATCGATCTTAGAAGAA
AACTCCAGAACAGGACAGACTGCATCCGCGGGAGCACCAACACGAAATTT
TGACGGGGTCGCACTTGGTTCCTCAGCATTCCGTCGTTTGGGCGCGACAA
GCCCTCGCAGGAGTTGGAACAGTGTGAGGCATTTCACACTGCTGTGCTAG
ACTTGTAAACTTGTACATCGCTGACACCAAGGGTGTGCCCATAACGTAGG
TATTTCGCTCAGGTTCCCCACTCGTGATGGCCACATCAACTCGCAGCTGT
ACATAACTTGATTGTACATGTACAGAAGCAATCATTGATATTTGTACAGC
AAAGAGTACTTGTATGGCACACGTGCAGATCCCGTTTAGTGTATATTTTC
CCTCATTTCCAAGAGTGCGAGCCGTCGCTAATGGTGCCACCAGACCATCG
TATGTGGTAGGGCGTGGAGTGGGCATCTGCTGCAATATTCCTTAATTCCG
CGAAGCCGAGGACTTGGCCCTCGATTTGCAGTTACTTCTGCATCGTCGCT
TGTGGATTCGGCTAGCCGTAGCTTCTCAATAAGCCCGAGAGGCTGTCAAC
GGTTGCGCTTTAGTCGCGATCAACCTGAGGCAAGATCGGTGACCAACCCG
GAGAAGAGGTGTTCACATGTACATCGCCACTGTGCTGCTCCTCGCAAGCA
AACGCAATAATAGACGATAGGGCTGCGTGGAATGTCAGAACGCCGGATGC
AGCAAAATAGCTGTCGTGAACACCTACTGTTTATGCGCGCGCCAGCAGCG
ATCAATGCAACTTTTCGAAAATCTGAGTTTGTGCGATGCACCCTGGTTAT
CCACGTGCGTAGACTCGATGAACAAACAGGCTCGCCGCGGGCTAAGCCGA
TATTCCGCGGAAGCTTTGGTTTCATAGCCCATGCATCCCATAAACCTGTC
GGCGAGAAAAGAACTGCGATGGCATGAGAGGCAATGCAAGGATGGTCATA
AATCCATTATGTTCTCGGAACGTTCTCCACGGTCCCAAATCCAGTAGCAT
CTCTCCAGACCCCTGAATCAATGTTGAATTCCTTATTTGGTTGGCGGGTT
GCCTCTTCAACAATCATCCCACGAGTGCTGGAGAGTGGCCTCGACATCGT
TATTTTGTCTGCAGACCCCATCGGTATTGCTGTAACATGATGTCTCAGTG
CACCTTGGTTTGTTTTTCAACAATTAATTGTGCGAGGACAGCACTTTCAA
GCAGTGTATGACTGCGGCAAATTTCATGCTGATCGTATCGCAGAGTTTTA
CCGTTGACCTTGGTTCTCTTACAGGCTGTTTTAAACACAACTGTTTTGCT
CCAAATTTACAAGTGTGTCCGACTTTGCAGATTTCCAATTGGGAAGGAAC
TCGTTCCAAATTTTTTGTTGCTAGTAGTTTCCAAGCTTCCAACTTTCAAT
TTTGTCTTCCTCAGCCGCAAATCGACGTTCTATGATCTACGGATTTAGAA
ATTACGAAATCTGGAAGCGAAGCAGCTACTGTGTGAATGGTCCCTTAGCT
GGGCCCTTTTTTCTTTGCTTCACGCATCTCATCACGACAATGTGTTTATC
GTGTCTCTCTTCTTCAGCCCTTCCGGTACAGCCGGTATCGCGAGCAAAGC
TTCTTACCTGTGAGACATCCGTTTTCGTCTGCGATGCATGACTCCAGTAT
AGTTGCAATAACTGCTCAGCAGCTCACTTTCCTCGCTCATCGACGTCGTT
GGAGAACTTGTACTCTCAAAAGAGTGTTTTCGAAACAACGTCTTTGTGAG
AAGGGGGAATCGTTCTCGACAGACGCTGGGGAGATGAGACCCTGTTGAAC
GGTCACCTACACATCTTCTCGATGATTTTGTTTGGGAATTTGTTGTGTGT
GATGGACAATAAAATCGTAGTTACGGATGTTCTATTGATGTCCCGTGTTT
GGATAACGGTACCGGGTAGATGTCGGATTCTTTTTGAAGGCAACAAACAA
CAACCACAACAGCAACAACAACAACATTTTTTGTCAAGTGTACCACGACA
AGTCGAGTGTTTTTTACTCGTTTTTCTCTTGTCTTTTACTCGTTTTTCTC
TCTTTCCCCTCTGCTCCACTCAGCTGAGTGCGTTCTCCGGAGCAGAAAAC
AGCTCGGTTCCCAGAGAGCACCGCCATTTGGTGGCCCTAGCCGCGCTCTT
ACCTCAGCGCGTGATCGAGAATCTCGTGGTGCAACGGCGGATAGGGAAGC
CCGGGAAGCCCCGCTATGCCACGGAATGCATGGACGCCGCTTTGCTGTTT
GTTGATATCAGTGGCTATACATCTTCGATGGAAATGTTCGCGCAACAGGG
CGCTCAAGGCATCGAGAAGTTTTGGAAAATGTTTAACGCATACTTCTGCG
ACCTCTTGGATATCATTCAGGTAGTTGTTCTCCCTTTCGCCGCAATCCAT
CTAAGTGCTTACATATGCGAGAGGATGTTTTTCAGTCCATGGAATTATTT
TGCTTTGGGCAATGATTGCGCCACGTATCCCTCTTCTGGGATTGTCCCAT
TTTGGCTTATTCTGCTTTAAATTAGGTAATCACGACCGCGACGCCCTTCC
CTGGCCTTAATGGCCGGCGCGATCGCAGAATGGTCTCACGGAAAGATCAG
AGATTGTCGTGCACTAGGCGAGGTCGCACGGCTTCTGCATGAGGTTCCAT
TGGTAGAAGCTAGCTGATCCTGATATTTTCGCCGAAAACCAGGCGTAGAT
TGGGCACCAACAGGGACTTCAACTGTGTCCAACGCCACATTATTTTCTCG
AAGGGACACTCGGATTTGTTCCTCTACCGTATGTAAATATGACTCCTCGT
GCGAAAACTCGTGACACCAAACGCCGTGCAGGGTACCGGCGGAGATATAG
ATTGTTTCGCCGGGGATGCCATCCTCATTGTGTACGAGACAGAGAGGATA
TGGAAACGCACAGGCGAGAGCGTTCGGAAGTGCATCAATACCCTTGATGG
CACCCAGCCCACAAAGCTTTGCTTGGCTACCATGGCCGCCGCGCAGTGCG
GCGGCAGGCTCCTGAACAAACTTAGTCCCTACAACTTCTCGGACGGTGCT
AGCGAGTCCTCTCTAACTCTTCACGGGTCCATCGGCGCTGGGAGTTTGCG
CACGGTGAACATCGGGGGTACCACGGCTCAGGTGAGTGAGGGGCACGGGG
GCGCACATCAACCCTGACCGCAGGGGGACTTCGGGTTCAACCGTAGAACT
TATTTTAAACCCAGTGTCGAGCTTGTGATTTGCCAGTGTCCCTCGGTGGT
GAGACCTCGAACAGAGCGGGGGCTCGTAGTGCGGTCGAAATCGCTTGCCG
TGTGCTTCGGTGACCATACTAGACCCATCCCGCAAAAGGCGACGTACATA
GAGCGGTTCATTCAGGTCGTCACCAAATCGATTTGCTTGGGTCCTGAGTA
TGTGTGCCTTGATGTCCCGGGGTGTGGTTCTTTTTTTTTCCTTCTGCTAA
AGACGAGAAGACCCCGACATCAGTCGTGTATTACGTCGTGCCTGGCCTTT
CAAGCTTGGTTGTCTGGAAAGCGTCCCTTGTTTTCCCTAACTTTCGCTCC
GGTGGTCTAGTTGGTACCTTCGAAACCTCGTGTAGGTCAGGCCAGGGGTT
CGAATACCGGCGTACGCGAGCTTTCCCTGCAACGGGAGTGTTTCTCTCGC
TTCCGGTCCTGACCTAGTGGATAGCGCTAGTTCGTGTGTACACAGAGTGG
AGAGAGCGCTGAACTCTTCTCGCATTAAGAATCGAACGCACCATACCGCA
AGAGGGGAGGGTAGAGAGGGGCCCTTCTGTGAGACCACGGGTTGGAGTAA
ACGGCACTAGTGCTGTGAGCGTTGATTTGAAGTGAAGACAGAAATATAAA
CAAAAGACCCAGTTTCTATCACTTGAAGGGCGCATTTCCTGTTTGTCAAT
CTTCGCCTCGATTGGCAGGAGAGTAAGCAAGCGTTGTTTTATGTATCTCA
GGGATGACACCAGTTTCTCTTTTGTTCTAGAAATGAGGAGTTAAAAATAA
GGGCTGCAGGTTTTTGTCTACAAGTTGTCGCTCGTCGCATCTAAGCGCAC
AAATGTTCTCTATATCCTAAACTCCGTCACCTCTCCACGTGCACCCCCCG
TGAATGAAACGAATTTCTTCATATTCGTGGATGTCTAGGCAGGGAGTTCA
TTTGCGACGTTTGTGTGCGGAGGCGTCTTCGAACAGCTGGCGATCGCGCA
CGACCTGTCAAGAAAGAACGAAATCTGCCTTAGTGGCGAGGTGAGGGAGT
TACAGCTACCTGGTTCACGGTGGAGGATTTGATCCTGCGTTGCGGTCTAG
CAGGGTTCCCACGTCGTATGTGCTGAAGAGTCGGGATGGAGCACGTGCGA
AAGCTGAAAGAATAAACAGTGAAAGGATGGAGCTCGAAAGGTTGTACTGT
AAATATTTTCGCGTACCACATCACGGCCAGGACGGGGCCTCGAGGCTAAC
AAGCCGAAATAGTTTCCTTGGAGTCTCCCTCCCGGCGACCTTCTATTTCT
CTCTCAGATTGTCCTTTTTCCGAGCCACAAACCGATCCCAGGCATCGGTT
GGCAATGTCCTAGAGTGCCCAGGAGCGAACATGATTTCAGGACAAAATGG
CAGACGATGCGTCGTCTCGACCCTCTCTTCACAGGCTGCTTGTGACCGTT
GAGAGGGGGCATCCTGTGCTTGTGTGCGAGGCGAAAAATATGCTCTGTGC
CTGCATAGCATCTTGAACCACCTTCATTGCATGCGTAGGGGAGATTGGAA
CTTGGTTATTGGAAAAATTTTGTTGTTCGTTGGTTTTCCTTGGCGGCAGG
CGGTTGCATTGACTGAGTACTGGCTAGACCTTTGGGATCACGCCGAGCAC
GAAACGTGTAAAATCCTGAAGGGGGTCAAGGAATTTGGTGATGGAGAGCA
GCAGCAGCAGCCACAGCCTGAGTCGGGGCCTCTTGAGACTCAGGCATCAA
CTTCTGCGGCGGAGGGAGCTAAGCCTCCTGGAGTCTTGCAAGGGCTCAAC
CCTGCCAAGGTGATTGGTTGGTACACGTGTGTCGCGTGGTTTGACGCCGC
AGGTGCGTTTCTGGAAGCCCATCTGGGAGACTTAAGCCCCTACGTTTGAA
TTTGGTGGAAAGATTTGTAAGGGATGACAGCTCCAGTTTGCGTGCTACCA
AATACGAAGGACCGTTCTGACTTCCCGCCCACAGCTATGCAACATACGAT
GACACCGAAGTAGAGCATATTACTAGGGAGAAGAACAACCAACAATATTT
TCGGAAATTGCCTGAAGGTGTGTTCTGGTAAGTCTGAATTGAGTACTCCA
TCGTAGTTTATATGACCGGTCGCCATGGTAGCCTAGTTTGTGTCCTCGAG
AATCTTCCAGTGGTCATGGTCAGTGGATCAGATTTCGGCGTAAGCGAGCT
TTTGTTGCAACGTGAGTTTTTCTCTCGCTTCGTTCCTGGCCTTGGCGAAA
AGCGCCGGTCAGTGTGTACACAGAGGGGAGAGAGTGTGCTCCACTCTTCT
CGAATTAATAATCGAAGGCAAAGTACCGCAGGAACGGTGGGTAGGGGGAA
CCCTTCTGTGAGACCACGGGTTGGAGAAGACCTCACAAGTGCTGTGAGCG
CCGATTTGAAGAGGAGACAAACAAAAAAAAGTTATGTCGAAGAAACTTGT
CATGTATCTCGCGCCGCACCTTGGTCATCAAGACGAAAAACGTCTGCGTT
AGCCAAAATCGTCATATTATAGAGTGACAAGAAAAAAAACACCGCTTGCT
CGCCACCTTCATGCCCATGTACCCGTTTGCCCTGGCAACTGCCGGGCGTT
GTTTTTCCGTGATATAGGCTACGATGCCTAGCTTGTACACCAGTGTTCCA
AAGGACACCAACGTGTGCACGAGATTGAATATGACCGCCCATGAGTACGA
CGGGCTGACAGAGGACCTAAAGGGCTTCATTTCAAGCTCGGTTCTCGACA
AGATGGAGAGCGTTCGAGGGGATGCGGCGAGCGGGATCGCCTTGGGAGAG
CTCCGGCAGGTGGACATTGCGATAGCTTTGAACTACAAGTTTTCCTGTAG
CGTGAACATGCACAATTACTTGTAGACTTCTCTCGATGTTTCACGCTTGT
GGTTCGTTCCAGGTGCGCTGTTGCGGGTGCGTGATGTTGCTAGATAAGTC
GTGATGCATGATGAGAATGGACCATAGAGATAGCAGAGGCGCATAAGGCG
TTGAGGTCTTTCCTGGGTGTGCTTTGGCACAGAATTTCACGACCTCGCCA
GGACAAGGCCTTTTCCAATGATCGGCAACACACCGATCCCTTAAACCATC
GTCTGCCAATCGATCGAACGCGGTATCCAGACTCCCGACCAAGAGGCATA
CGTTTGTTGCTGTTCACGCTTGCAATCACTCTCATATTTGCTTAGTCCTG
ACGCAACTGATCGAAAGCAAGCTACGAAGTGATATGACTTGCTTACCGTA
CAAAAAATACACATGGAGGAAGGGCCAAAGCAATGTTATGCTAGACTGTG
TAGCATTTCCTTTGTACCATCTGCCTCCTTTGCTGTCTCCCATTCAGGGC
ACGGTTGGGTTCGTGAAATTCGACATCAAGGACATTAACAGCAGCGCTTG
TGCCAATCCAGAAAACGGTATCAAGGAGGTGGCTCAGGTGGCGATGATGG
GCTTTCGAGAAGTCCTGATTGCCGGGGGCTATGTGAACAAGGTGACGCAT
GGTTGGAGCTATTTTCCCGACGTTGGTTTGGATGTCGCCGCACGAATCAT
GGACGAAATCACACGTGGGTTCTTGAGCTCTGCAAGGGACGTGAACTGTC
TCCCAAAGGTATCTTGTTGTATCGTTAGCACCAATTTTGCGGGGAGTTTC
CTCCCGAAAACCTGGCGGCAGGAAATTTTTCGTTGGTTCGACATCATGTC
TCAGCTAATAGTCGCTCGTTGGAGTTGTGTGGGTCAAACATCGTGCGATG
GAAGACTTGTGCGAGGTTTTGACCTGTCGTCCTCGCCCATAAGCACGTTG
CCACATGCATAGCCAAATCCACACTGCAACACGACACGCACTTGTCATTC
TCATGCTCCTTGGTGCTCGCCTCGTGCTAGTGAAGTCTACCTCCGCAATA
GGTCGTACAAACATAGTCATCGAGAAATTCGTCAACAATCAACAAACAAA
CGGTGTTTCTCATATTTTGTCTGCATAGTGTAGGGTCTCAACTACCGTTT
GGTGTTACGTCATTTTTTCGGCTACAGGTTATAATGGACGAAAAAGGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig105:29444..36991+

>mRNA_Ecto-sp13_S_contig105.474.1 ID=mRNA_Ecto-sp13_S_contig105.474.1|Name=mRNA_Ecto-sp13_S_contig105.474.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1689bp|location=Sequence derived from alignment at Ecto-sp13_S_contig105:29444..36991+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGTTGTTTTTCAGCTGTGCGTGCGCACCACATGTGCAAGATGACAC
CTCGCTTGAAACATCGGATCAACTCCAAGGGAACTCTGGCACCGACTCTA
AGGAAAAGATCATCGATTCCGCCGCGGTGGTCCCTTCTCCGGAAGGAGCA
CAGGAGGGCCGTAAAGCTTCGCCGACCCACAACGGTTCGGACGACCCACC
ACGAGAATCCAAATTTCGTGCATTTGAGAAGGCCGACGTCAGCCCTGTTC
CCGATTCCAAGCCGGAAGCCTCCCTTTTAGGAGGATCGATCTTAGAAGAA
AACTCCAGAACAGGACAGACTGCATCCGCGGGAGCACCAACACGAAATTT
TGACGGGGTCGCACTTGGTTCCTCAGCATTCCGTCGTTTGGGCGCGACAA
GCCCTCGCAGGAGTTGGAACAGTCTGAGTGCGTTCTCCGGAGCAGAAAAC
AGCTCGGTTCCCAGAGAGCACCGCCATTTGGTGGCCCTAGCCGCGCTCTT
ACCTCAGCGCGTGATCGAGAATCTCGTGGTGCAACGGCGGATAGGGAAGC
CCGGGAAGCCCCGCTATGCCACGGAATGCATGGACGCCGCTTTGCTGTTT
GTTGATATCAGTGGCTATACATCTTCGATGGAAATGTTCGCGCAACAGGG
CGCTCAAGGCATCGAGAAGTTTTGGAAAATGTTTAACGCATACTTCTGCG
ACCTCTTGGATATCATTCAGGGTACCGGCGGAGATATAGATTGTTTCGCC
GGGGATGCCATCCTCATTGTGTACGAGACAGAGAGGATATGGAAACGCAC
AGGCGAGAGCGTTCGGAAGTGCATCAATACCCTTGATGGCACCCAGCCCA
CAAAGCTTTGCTTGGCTACCATGGCCGCCGCGCAGTGCGGCGGCAGGCTC
CTGAACAAACTTAGTCCCTACAACTTCTCGGACGGTGCTAGCGAGTCCTC
TCTAACTCTTCACGGGTCCATCGGCGCTGGGAGTTTGCGCACGGTGAACA
TCGGGGGTACCACGGCTCAGGCAGGGAGTTCATTTGCGACGTTTGTGTGC
GGAGGCGTCTTCGAACAGCTGGCGATCGCGCACGACCTGTCAAGAAAGAA
CGAAATCTGCCTTAGTGGCGAGGCGGTTGCATTGACTGAGTACTGGCTAG
ACCTTTGGGATCACGCCGAGCACGAAACGTGTAAAATCCTGAAGGGGGTC
AAGGAATTTGGTGATGGAGAGCAGCAGCAGCAGCCACAGCCTGAGTCGGG
GCCTCTTGAGACTCAGGCATCAACTTCTGCGGCGGAGGGAGCTAAGCCTC
CTGGAGTCTTGCAAGGGCTCAACCCTGCCAAGGCTACGATGCCTAGCTTG
TACACCAGTGTTCCAAAGGACACCAACGTGTGCACGAGATTGAATATGAC
CGCCCATGAGTACGACGGGCTGACAGAGGACCTAAAGGGCTTCATTTCAA
GCTCGGTTCTCGACAAGATGGAGAGCGTTCGAGGGGATGCGGCGAGCGGG
ATCGCCTTGGGAGAGCTCCGGCAGGGCACGGTTGGGTTCGTGAAATTCGA
CATCAAGGACATTAACAGCAGCGCTTGTGCCAATCCAGAAAACGGTATCA
AGGAGGTGGCTCAGGTGGCGATGATGGGCTTTCGAGAAGTCCTGATTGCC
GGGGGCTATGTGAACAAGGTTATAATGGACGAAAAAGGT
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