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Homology
BLAST of mRNA_Ecto-sp13_S_contig10492.468.1 vs. uniprot
Match: D7G1J8_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1J8_ECTSI) HSP 1 Score: 334 bits (856), Expect = 5.750e-108 Identity = 174/185 (94.05%), Postives = 176/185 (95.14%), Query Frame = 1
Query: 1 QGNPLSRLQHVGLGWQLLANVFLEDVPQFIITVITRPTSVTGVLNLCASGLSLCAKIVHGISSQRAPSLSTQFKMIDQDPAVTRNLFKLRDEAKKKAKAAEKLVYLAWANRRVAGGLCSTGAQKAAAVFQVLQMDPTFVGGDLEYMRADLFSGSRLYITACSLTGPIPSQVGDMTILQAVVLSGN 555
+GNPLSRLQHVGLGWQLLANVFLEDVPQFIITVITRPTSVTGVLNLCASGLSLCAKIVHG SSQRAPSLSTQFKMIDQDPAVTRNLFKLRDEAKKKAKAAEKLVYLAWANR CSTG QKAAAVFQVLQMDPTFVGGDLEYMRADLFSGSRLYITA SLTGPIPSQVGDMTIL+AVVLSGN
Sbjct: 229 KGNPLSRLQHVGLGWQLLANVFLEDVPQFIITVITRPTSVTGVLNLCASGLSLCAKIVHGYSSQRAPSLSTQFKMIDQDPAVTRNLFKLRDEAKKKAKAAEKLVYLAWANR------CSTGEQKAAAVFQVLQMDPTFVGGDLEYMRADLFSGSRLYITASSLTGPIPSQVGDMTILRAVVLSGN 407
BLAST of mRNA_Ecto-sp13_S_contig10492.468.1 vs. uniprot
Match: A0A6H5JNU7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNU7_9PHAE) HSP 1 Score: 165 bits (417), Expect = 3.070e-45 Identity = 82/83 (98.80%), Postives = 83/83 (100.00%), Query Frame = 1
Query: 22 LQHVGLGWQLLANVFLEDVPQFIITVITRPTSVTGVLNLCASGLSLCAKIVHGISSQRAPSLSTQFKMIDQDPAVTRNLFKLR 270
LQHVGLGWQLLANVFLEDVPQFIITVITRPTSVTGVLNLCASGLSLCAKI+HGISSQRAPSLSTQFKMIDQDPAVTRNLFKLR
Sbjct: 292 LQHVGLGWQLLANVFLEDVPQFIITVITRPTSVTGVLNLCASGLSLCAKIIHGISSQRAPSLSTQFKMIDQDPAVTRNLFKLR 374
BLAST of mRNA_Ecto-sp13_S_contig10492.468.1 vs. uniprot
Match: D7FK13_ECTSI (Hypothetical leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FK13_ECTSI) HSP 1 Score: 125 bits (313), Expect = 3.580e-29 Identity = 74/178 (41.57%), Postives = 105/178 (58.99%), Query Frame = 1
Query: 1 QGNPLSRLQHVGLGWQLLANVFLEDVPQFIITVITRPTSVTGVLNLCASGLSLCAKIVHGISSQRAPSLSTQFKMIDQDPAVTRNLFKLRDEAKKKAKAAEKLVYLAWANRRVAGGLCSTGAQKA----AAVFQVLQMDPTFVGGDLEYMRADLFSGSRLYITACSLTGPIPSQVGDM 522
+G LS LQHV LGWQLL NV +ED+PQ +IT +T PTSV GVLN+ +G +L AK+ G +++ +S+Q +MID DP V ++L R +A++ A A L L NR A + + A FQV+Q+DP F+ G+L Y+R L SRL + L G +P +GD+
Sbjct: 201 RGRALSPLQHVPLGWQLLLNVVVEDIPQLVITWVTSPTSVAGVLNIATAGFALLAKMAEGFATRTDLPMSSQLRMIDTDPGVVQHLLNARHKAEELAANAASLAVLV--NRFGAENAAMPTERNSKRLLATAFQVMQVDPGFLNGELGYIREKL-EVSRLNLGRFGLKGSLPPSLGDV 375
BLAST of mRNA_Ecto-sp13_S_contig10492.468.1 vs. uniprot
Match: A0A6H5JP38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP38_9PHAE) HSP 1 Score: 96.3 bits (238), Expect = 2.750e-22 Identity = 46/49 (93.88%), Postives = 47/49 (95.92%), Query Frame = 1
Query: 346 GLCSTGAQKAAAVFQVLQMDPTFVGGDLEYMRADLFSGSRLYITACSLT 492
G CSTG QKAAAVFQVLQMDPTFVGGDLEYMRADLFSGSRLYIT+CSLT
Sbjct: 8 GRCSTGEQKAAAVFQVLQMDPTFVGGDLEYMRADLFSGSRLYITSCSLT 56
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 0 |
| Start | 0 |
| Model size | 786 |
| Hectar predicted targeting category | other localisation |
| Exons | 7 |
| Cds size | 786 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681462534.4436362-CDS-Ecto-sp13_S_contig10492:113..382 | 1681462534.4436362-CDS-Ecto-sp13_S_contig10492:113..382 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig10492 114..382 + |
| 1681462534.4522192-CDS-Ecto-sp13_S_contig10492:895..976 | 1681462534.4522192-CDS-Ecto-sp13_S_contig10492:895..976 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig10492 896..976 + |
| 1681462534.4610422-CDS-Ecto-sp13_S_contig10492:2188..2331 | 1681462534.4610422-CDS-Ecto-sp13_S_contig10492:2188..2331 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig10492 2189..2331 + |
| 1681462534.472245-CDS-Ecto-sp13_S_contig10492:3723..3795 | 1681462534.472245-CDS-Ecto-sp13_S_contig10492:3723..3795 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig10492 3724..3795 + |
| 1681462534.4913757-CDS-Ecto-sp13_S_contig10492:4176..4248 | 1681462534.4913757-CDS-Ecto-sp13_S_contig10492:4176..4248 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig10492 4177..4248 + |
| 1681462534.5057316-CDS-Ecto-sp13_S_contig10492:5218..5290 | 1681462534.5057316-CDS-Ecto-sp13_S_contig10492:5218..5290 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig10492 5219..5290 + |
| 1681462534.515236-CDS-Ecto-sp13_S_contig10492:5672..5749 | 1681462534.515236-CDS-Ecto-sp13_S_contig10492:5672..5749 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig10492 5673..5749 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10492.468.1 >prot_Ecto-sp13_S_contig10492.468.1 ID=prot_Ecto-sp13_S_contig10492.468.1|Name=mRNA_Ecto-sp13_S_contig10492.468.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=262bp
QGNPLSRLQHVGLGWQLLANVFLEDVPQFIITVITRPTSVTGVLNLCASG LSLCAKIVHGISSQRAPSLSTQFKMIDQDPAVTRNLFKLRDEAKKKAKAA EKLVYLAWANRRVAGGLCSTGAQKAAAVFQVLQMDPTFVGGDLEYMRADL FSGSRLYITACSLTGPIPSQVGDMTILQAVVLSGNQLSGCIPAELGKLVN LKELNLSENTLSGPIPVELTKLAALMVMNLSTNALTGSIPAGLSDLKLLT TLMLAKNRLTGE back to topmRNA from alignment at Ecto-sp13_S_contig10492:114..5749+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp13_S_contig10492.468.1 ID=mRNA_Ecto-sp13_S_contig10492.468.1|Name=mRNA_Ecto-sp13_S_contig10492.468.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5636bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10492:114..5749+ (Ectocarpus species13 EcNAP12_S_4_19m) CAGGGCAACCCCCTGAGCAGGCTCCAGCACGTGGGCCTCGGGTGGCAGCT
CCTGGCCAACGTGTTCCTCGAGGACGTGCCGCAGTTCATCATCACCGTCA
TCACCCGCCCCACCTCGGTCACCGGGGTGCTCAACCTCTGCGCCTCCGGC
CTATCCCTGTGCGCCAAGATCGTCCACGGCATCTCCAGCCAGAGGGCCCC
CTCCCTGTCGACGCAGTTCAAGATGATCGACCAGGACCCCGCTGTCACGA
GGAATCTGTTCAAGCTTAGGTGAGGGAAGGGGGCGCCGTCGTTTGCGATA
CGGGTATGTAACATAGCGCACAATGAGATACGCACGCAGCGCACCTTGTT
TATTTTTTTTGCGGGGGGAAGACTTCGCGTACCTATGATATTGTGAGTCC
CATCGACGCCGCTATGCCCTAATTCCATGTCAAACACAGAGTCATACTTC
CGTGGGCGGACGGCCCAAAAATGTTGCTCGTGGTTCACGTGTATCCTACG
GGGAGAGATGCAAGGTCCATGTGGTGCCCTGCCCCCCCAACCCCCCAGCT
TCTGGTTCATCCTTGTGCAAAGCAGCCAGGACCGGTGAAAACCCGGCATG
TCGCCCCGTCTCGGCATTGGAGGGATGCGAGGTCAACGGTCTCTCAGCTA
CGGCATGCGTTTACATGAGTAACCCCCGAACCGCAATTTTCGCTGGTCTT
CCTTGGGTACATGCCTTTGTATAGACAAGAACACCTCGTCATTCGTCCGT
TGACCGTTTTTTTTTCGTCTGAACCCCTCCAGGGATGAGGCTAAGAAGAA
GGCCAAGGCAGCGGAGAAGCTGGTCTACCTCGCTTGGGCCAACAGGCGAG
TCGCCGGGGGCTTGTGTTGCCGGGGCGGGGGGGGGGGGGCTGTTATTGTT
TTCTCCGGTGTTTGGGGAGGTTGACGACGCGGGCACCGTCTCGTTCAAAA
TGACGAGGCGTGAATCTCGGTTGGGGCGACGGGGATGTGGTGAAGAAGCA
ATCCATGGTATGCCGTGGAGGGGGGGGTCGTTGGACTCACAGGCGCATCA
CAAGGCTGTCACACACGGACGGATGGAGAGGCGTAGGGCGAGGGCTCGTC
AGGGGTCGGTCGATTTGGTCTTTCCGCGGAGGCACCTATCGTAGTGTGCC
ATGCGTCTCCTTCTAAGTGAGAGAGAGAAAAATACACGCAGACAGTCAGA
CAGACAGACAGTCAGGCAGACAGACAGACAGAGATAGAGGTAGAGGAGAG
ACAGACAGACAGACAGACCCAGACTCGGATACTGGTTTTCTGGCTTGTGA
TCCGGGAGCAATTGGGCCAACAGATGCTTCGGGAAGAACAACAAGACATA
ATGCTTGAGGCTTACAGAGCGGGGGCGGGTACTTGAATGCTCTACATGCG
AGCAATACAGATCCAACCTAGATCTTTGAAGTCGATACCGCGGTGGCATC
CGAGTGATCCGCCGTTCATCTCCGGTTGTGTGCGCACGTTTTTCTTTCAA
GACAAACCCTTTGAATCCCAGCTCTGGGCACTGGTTTACACGTCGCCTCT
TTTGGTCCTGCGTGTTCGCCCTTCCCTCCCTCGTGCCGCACGCGGTTTGG
TCGAAACTCTGTCTTGGTTGTCTGGCTTTTCTTGGGGAGAAGACGCTTTT
TCTCCGGCGCTACGACAGTGAAGATCTATCTTCGAGTTCATGGGCGTTCT
TTGGAAGTTTTCTGGTATTCAGTGTTAGGACCACGTATGCATCATCAGTA
TCCTCCGGGAACAAGCGTTGCTGGTGGGGTCCGGGTGCCGACCCCGCCGG
TAGGATGGTCCCCCTGCACGACTCAGGCATGATTTCGCTCTACAAAACAA
ATCGTGCAAGCATCGAAATCGAAATCTACGACAAGCACCTTGACACCGAA
CAACACCCGCAATATCACCACAAGAGCCAGATCCGCTCTTCGGGACATTC
CCACGACAACACCCACCTTACCGATCGTCGTTCTATTTTTCAGCCTGCCT
TTGTGAGGTTGTGCTGTGTCTACGTCCTTGTGTCACCCCCCTCCTTCCGG
TGCTGGCGTTTTTTGTCCGTTGCAGGTGCTCAACCGGGGCGCAGAAGGCG
GCGGCGGTGTTTCAGGTCCTCCAAATGGACCCCACCTTCGTCGGCGGAGA
CCTGGAGTACATGAGGGCCGATCTCTTCTCGGGATCAAGGCTTTACATCA
CGGCCTGCAGCCTCACAGGTAAGAGGAGGGGGGGGGAGCGGGGATTTAGA
TCGCCGCATGCTAAAGGGGGCTTTGCATCAACGCATGCGGCGTCACGAGT
ACAGGGGGGGTCATGACGTTACCACATGCAATCTTGCAGGTAAAGGATCC
AGTATAAGATCACCGCATGCGGCCTCGCAGGCAGAGGGAGTGGCTTTGCA
TCACTGCATGCAGCCTCACTGGGGCTTTTTGTCACTGCATGCAGCCTCAA
GTTGTAGAGGAGCTTTCGCATCACTGCATACGGCCTTACAGGTAGAGGGG
GGGGCTTTCTATCACCCTATGCGGCGTCACAGGTAATTTTTTTCTACTTC
GGTGCATGCCGCCTGACAGGCATAGGGGGGGGCTGTACATAACCGCATGC
AGCCTCACAGGGTAGAGGAGGGGGGAATACATACTGAATAAAACTTTGTC
ACTTGAGGAGAATTCATGTTGACTGTACCAACATGCTTCCGATATCGTGT
TTTCCGACGCATGGTATGCATGCGTGCCGATCAAGTCACCCGGCGTCATT
CTGTGTCTTGTAATGCATGAAAATCCTCGAATATTTCCCGGCTCCACGCG
ATACTTTGGAGGCTGGCGCCATGCCTCGGCCTGCATAGCACTCTTCCGTG
CATGCTCTTCGGACCCGCCTGAACGCGAAACCACCATCACTATTGTTCCC
CCTGGCCACCCTTTTTTATTTTTGCAGCAACGTAAATGGTGGTCGAGTAG
ATCATGTTTTGCGGGGTCGAAAACCCTCAATCCGCACAAAGGAGATAATC
GCACCACGTTGTGTTAAATTGGTCAAGCACCCTCGAAGCAGTTACACAGT
GCTGATAACTGTTTCTGGAAGTGAAAGTACTAGAAAATAAATTCAGTAAT
TCGCGGCTGTCATCCTTATGCAAGGACGTAAGCACAAGATGCCGAACACC
CTTAGCAGGATGCAGCGCATCCTCCATGCGACTCGCCGAATACCTCACGG
TGCTTCGCGCTTAGTGATGTGAGAGCCTTGTCCGGTGAGAACCCGGCATG
CTCTGTCTCGGCTTTGTGGGTGTGCGAGGTCAATGGTCTAACGACTACGG
CATACACGGCTATGAGAACCCCCCCCATACACACGCCTTACGTGACACCC
CCTCCCGGAGGCCCAGATCATGGCCTCTGGAAGAGGTTTACGCTTTGAAC
CTCGCTGACGCTGGCATCATGTCGTTGATCAGCAGAATAACACCTTCGGT
ACTTACGATACAGACTCACGCAAACATCTGGTCGGCCAAATGCCAACGTG
TTGTTGTCGTCCGAACCTTGATATTCTGGTTCACGCATAACATACCCATG
TGTACATGAACGAACCTTCATGATCATGCCTCGTTCGTTTGCCCACCCGG
TCGCGCTCAGGGCCCATTCCGTCGCAGGTCGGCGACATGACAATTCTGCA
GGCGGTGGTCTTGTCCGGCAACCAGCTGTCAGGTACGCGCTTGCTTCTTC
TGCGACCCGTCGCAAGAGCCTCCTCGCCCCCGCGCAAGCTTTGTAAGATT
CGTCCTCCGTGGCTCCCACAGGGCCTGTGTGGTGCACGTCCTCCGTTCAA
CAATCCAATGGCGACTGCTGGTGCCTTTGAAAACAAGATTTGTCGTTATT
TCAGCAGATGTGTTCGAAGCGGTTCGAAGTGTTCGAGTGCGTTGCGGGAC
TGCGCCCGCGGGCAGTGTGTTCACCAACTCTGCTTCTCCTTTGTACTCAT
CTCGTGTCTGTCTGTCTGTCTGTCTGTCTGTCTTTCTGTCTGTCTGTATC
TGTATCCACCCTTTGGGCATGCTTGTGGCGTTGTGGCCTTTTCTCACCCC
CGCATGCGCCAAGGCTGCATCCCCGCCGAACTCGGAAAGCTCGTCAACCT
CAAGGAGCTAAATCTCAGCGAAAACACCCTCAGCGGTGAGTGCGTCCATC
CCATTGGTCGAACACTGGCAAGCTTCCGCAAGGGCGCTGGCTGTGAAGCA
ACGGCTGCTACGAGCAAGTGCTAGTACCGTGTCTTGATCGAGGAGTACTG
CCCTCCCCTTGTGGCCCTAACAAGTACTCTGCACCAAGTGTGTTTGGTAG
GTCCGACAAAGGGAATACTCTCCAGTCTGCCGATCCCCTTGAGAGGAGAC
CGGCCGCATGTCAAGAGTGCGCGGCAGGTCCTTCTTGACCTCATCTTCGG
AGTGATACAAAAACAGTGCCATCATTTTGAGACCGTAAGGCTGCGATGGC
ATCGTGAGAAACATCCTCAAGTCGCCCCGAACGAGATGAGATAGATGACA
ACAAAGCGCCCCACTCGGTGGGGTAGTCCGGGTGTTTACAGAGCTTTTTT
CGATTTTGCGGTTTCTACGCAGCTGGTTACAGTTTCGTTCAAAGAAAAAC
GTTTCTCGTCGGTACGTGTACACTTCCAAACTCCTTCGTCTCCGAGATGT
GATACCTTCTGCTAAATGTTTGAGGCTGTGGGGCAGCCGTCATCCCCTGT
GAGCCCCGCACCCCTAAATGGCGACGGCGAACAACGCGACCACGAGCGAT
CTAGCCGTAGCAGAGGGTTAGGGTTACGGTTACAAAAACACGAACACGCT
AAGTAACCCGCTGGCTCATCCGACAGGAGGGCTGCGGTAGGGATTTGACG
ACAGGGGCCTAGTCTTGCGAAAGGAGCAGCCACAGCAGTACTATCGCGCA
TCAATCCTCCTGTCCTGGGACCATTCTCAAGAAGTCTCTACCGTTCGTCT
CTTTGCTCCATTCGGCTCGTCACTAGCTTCGGCATACGCCTTCGTTCCCT
GAAGTTCATTTGTTCGTTCTAAACCTTTCCCTCCACGTTGCCGCTGCTCT
GACGGGCGTATTTTTTCCCCTGATGTGTGTGTGTGTGTTGTCGCGTATGG
TGCAGGTCCGATCCCTGTCGAGCTTACGAAGCTCGCGGCGCTCATGGTCA
TGAATCTGTCTACCAACGCTCTCACCGGTAAGCGAGTGTTGTACTTGCAG
GCTTCCTTTTCGTTTTGTTGTGGAAGCTGGTCCTGTTGTGCAGTCTTTTA
CGGATTGTTCTCTCGGCGGTCGACGAAAGCTGGCCATCAGCCGCGTTTCT
TTCGAAGGCCGACAGCAACTCTTTCCTCGACAAGGTAACCGCGGTCTTGT
TTCGCGGGCTTCCCAAAGACACGCGTTCGGGCGCATGTGCCCACCACCCC
GAGCTGGCGGTGATCGGTCAGTCCTGTGGGAACGATTGCCCCGTCCTCTC
GAGGACGCGTGGTCAGTGGTCTAACCGCCAAGGAACGAAAAAACATGGGC
ACACCCCGGCCCCGAACTTCACAAAGAAACTTACTTCCCTCTTTCTTCCT
TCGCCGCAGGGTCTATCCCGGCGGGACTGTCGGATCTGAAGCTGCTGACC
ACTCTCATGCTCGCGAAGAACCGGCTTACCGGTGAG back to topCoding sequence (CDS) from alignment at Ecto-sp13_S_contig10492:114..5749+ >mRNA_Ecto-sp13_S_contig10492.468.1 ID=mRNA_Ecto-sp13_S_contig10492.468.1|Name=mRNA_Ecto-sp13_S_contig10492.468.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=786bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10492:114..5749+ (Ectocarpus species13 EcNAP12_S_4_19m) CAGGGCAACCCCCTGAGCAGGCTCCAGCACGTGGGCCTCGGGTGGCAGCT CCTGGCCAACGTGTTCCTCGAGGACGTGCCGCAGTTCATCATCACCGTCA TCACCCGCCCCACCTCGGTCACCGGGGTGCTCAACCTCTGCGCCTCCGGC CTATCCCTGTGCGCCAAGATCGTCCACGGCATCTCCAGCCAGAGGGCCCC CTCCCTGTCGACGCAGTTCAAGATGATCGACCAGGACCCCGCTGTCACGA GGAATCTGTTCAAGCTTAGGGATGAGGCTAAGAAGAAGGCCAAGGCAGCG GAGAAGCTGGTCTACCTCGCTTGGGCCAACAGGCGAGTCGCCGGGGGCTT GTGCTCAACCGGGGCGCAGAAGGCGGCGGCGGTGTTTCAGGTCCTCCAAA TGGACCCCACCTTCGTCGGCGGAGACCTGGAGTACATGAGGGCCGATCTC TTCTCGGGATCAAGGCTTTACATCACGGCCTGCAGCCTCACAGGGCCCAT TCCGTCGCAGGTCGGCGACATGACAATTCTGCAGGCGGTGGTCTTGTCCG GCAACCAGCTGTCAGGCTGCATCCCCGCCGAACTCGGAAAGCTCGTCAAC CTCAAGGAGCTAAATCTCAGCGAAAACACCCTCAGCGGTCCGATCCCTGT CGAGCTTACGAAGCTCGCGGCGCTCATGGTCATGAATCTGTCTACCAACG CTCTCACCGGGTCTATCCCGGCGGGACTGTCGGATCTGAAGCTGCTGACC ACTCTCATGCTCGCGAAGAACCGGCTTACCGGTGAG back to top
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