mRNA_Ecto-sp13_S_contig10489.465.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10489.465.1
Unique NamemRNA_Ecto-sp13_S_contig10489.465.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10489.465.1 vs. uniprot
Match: A0A6H5JZM9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZM9_9PHAE)

HSP 1 Score: 160 bits (406), Expect = 5.400e-44
Identity = 80/86 (93.02%), Postives = 84/86 (97.67%), Query Frame = 1 
Query:    1 MTPEFGQRQAEDGTGLPEPVGFAPYSLQSLNTPESIGRIMIFHQPRVHPVRAGRFQVVIGAASRVKYSVSVMAATAIDAFAAFDES 258
            M PEFGQRQAEDG GLPEPVGFAPYSLQSLNTPES+GR+MIFHQPRVHPVRAGRFQVVIGAASRVKYSVSV+A+TAIDAFAAFDES
Sbjct: 2063 MPPEFGQRQAEDGAGLPEPVGFAPYSLQSLNTPESLGRVMIFHQPRVHPVRAGRFQVVIGAASRVKYSVSVVASTAIDAFAAFDES 2148
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BLAST of mRNA_Ecto-sp13_S_contig10489.465.1 vs. uniprot
Match: D8LJN6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJN6_ECTSI)

HSP 1 Score: 152 bits (384), Expect = 5.000e-41
Identity = 77/86 (89.53%), Postives = 81/86 (94.19%), Query Frame = 1 
Query:    1 MTPEFGQRQAEDGTGLPEPVGFAPYSLQSLNTPESIGRIMIFHQPRVHPVRAGRFQVVIGAASRVKYSVSVMAATAIDAFAAFDES 258
            M P FGQ QAEDG  LP+PVGFAPYSLQSLNTPESIGR+MIFHQPRVHPVRAGRFQVVIGAASRVKYS+SV+AATAIDAFAAFDES
Sbjct: 1793 MPPAFGQGQAEDGAELPQPVGFAPYSLQSLNTPESIGRVMIFHQPRVHPVRAGRFQVVIGAASRVKYSLSVVAATAIDAFAAFDES 1878
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BLAST of mRNA_Ecto-sp13_S_contig10489.465.1 vs. uniprot
Match: A0A7S3UTN3_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UTN3_HETAK)

HSP 1 Score: 62.0 bits (149), Expect = 2.380e-10
Identity = 29/55 (52.73%), Postives = 40/55 (72.73%), Query Frame = 1 
Query:   16 GQRQAEDGTGLPEPVGFAPYSLQSLNTPESIGRIMIFHQPRVHPVRAGRFQVVIG 180
            G R+   G G P PVGFA + LQSLNTP S+GR+++ H+PR  PVR G F++++G
Sbjct:   76 GAREVLGGAG-PVPVGFAAHGLQSLNTPTSLGRLVLQHRPRAIPVRPGTFRLIVG 129
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BLAST of mRNA_Ecto-sp13_S_contig10489.465.1 vs. uniprot
Match: A0A2D7DTQ6_9SPIO (Uncharacterized protein n=1 Tax=Spirochaeta sp. TaxID=28185 RepID=A0A2D7DTQ6_9SPIO)

HSP 1 Score: 62.4 bits (150), Expect = 2.100e-9
Identity = 28/62 (45.16%), Postives = 41/62 (66.13%), Query Frame = 1 
Query:   34 DGTGLPEPVGFAPYSLQSLNTPESIGRIMIFHQPRVHPVRAGRFQVVIGAASRVKYSVSVMA 219
            DG   P P+G+APY  Q LNT  + G+ ++ H P   P+++G + VV+GAAS  KYS++V A
Sbjct: 1439 DGLSPPIPIGYAPYESQQLNTGTTFGKTVLVHDPSEKPLKSGVYNVVLGAASATKYSITVEA 1500
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BLAST of mRNA_Ecto-sp13_S_contig10489.465.1 vs. uniprot
Match: A0A8J2SQY8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SQY8_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 1.000e-8
Identity = 27/57 (47.37%), Postives = 40/57 (70.18%), Query Frame = 1 
Query:   49 PEPVGFAPYSLQSLNTPESIGRIMIFHQPRVHPVRAGRFQVVIGAASRVKYSVSVMA 219
            P P+G+APYS Q LNT  + G+ ++ H P   P+++G + VV+GAAS  KYS++V A
Sbjct: 2031 PIPIGYAPYSSQQLNTGTTFGKTVLVHDPSEKPLKSGVYNVVLGAASATKYSITVEA 2087
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BLAST of mRNA_Ecto-sp13_S_contig10489.465.1 vs. uniprot
Match: A0A6G0W836_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W836_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 1.480e-6
Identity = 27/55 (49.09%), Postives = 35/55 (63.64%), Query Frame = 1 
Query:   49 PEPVGFAPYSLQSLNTPESIGRIMIFHQPRVHPVRAGRFQVVIGAASRVKYSVSV 213
            P+P+G   Y+  SLNT ES+GRI+I H PR  PV  G F +V+G  S   YS+ V
Sbjct: 1429 PQPIGQVKYADVSLNTRESLGRIVIRHAPRQLPVAQGIFHIVVGCPSETIYSIEV 1483
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BLAST of mRNA_Ecto-sp13_S_contig10489.465.1 vs. uniprot
Match: A0A024TE96_9STRA (Uncharacterized protein n=5 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TE96_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 1.800e-5
Identity = 24/55 (43.64%), Postives = 35/55 (63.64%), Query Frame = 1 
Query:   49 PEPVGFAPYSLQSLNTPESIGRIMIFHQPRVHPVRAGRFQVVIGAASRVKYSVSV 213
            P P+G   YS  +LNT ES+GR+++ HQP   P+  G + +V+G  S  KYS+ V
Sbjct: 1446 PTPLGQVLYSDVALNTRESLGRVVLRHQPAQVPIAQGTYHIVVGCPSDTKYSIVV 1500
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10489.465.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5JZM9_9PHAE5.400e-4493.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJN6_ECTSI5.000e-4189.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3UTN3_HETAK2.380e-1052.73Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A2D7DTQ6_9SPIO2.100e-945.16Uncharacterized protein n=1 Tax=Spirochaeta sp. Ta... [more]
A0A8J2SQY8_9STRA1.000e-847.37Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A6G0W836_9STRA1.480e-649.09Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A024TE96_9STRA1.800e-543.64Uncharacterized protein n=5 Tax=Aphanomyces invada... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10489contigEcto-sp13_S_contig10489:444..1486 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size258
Hectar predicted targeting categoryother localisation
Exons3
Cds size258
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462534.1020176-CDS-Ecto-sp13_S_contig10489:443..5331681462534.1020176-CDS-Ecto-sp13_S_contig10489:443..533Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10489 444..533 -
1681462534.1123772-CDS-Ecto-sp13_S_contig10489:888..10021681462534.1123772-CDS-Ecto-sp13_S_contig10489:888..1002Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10489 889..1002 -
1681462534.1300645-CDS-Ecto-sp13_S_contig10489:1432..14861681462534.1300645-CDS-Ecto-sp13_S_contig10489:1432..1486Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10489 1433..1486 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10489.465.1prot_Ecto-sp13_S_contig10489.465.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10489 444..1486 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10489.465.1

>prot_Ecto-sp13_S_contig10489.465.1 ID=prot_Ecto-sp13_S_contig10489.465.1|Name=mRNA_Ecto-sp13_S_contig10489.465.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=86bp
MTPEFGQRQAEDGTGLPEPVGFAPYSLQSLNTPESIGRIMIFHQPRVHPV
RAGRFQVVIGAASRVKYSVSVMAATAIDAFAAFDES
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mRNA from alignment at Ecto-sp13_S_contig10489:444..1486-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10489.465.1 ID=mRNA_Ecto-sp13_S_contig10489.465.1|Name=mRNA_Ecto-sp13_S_contig10489.465.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1043bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10489:444..1486- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACGCCCGAGTTCGGGCAACGACAGGCCGAAGATGGAACGGGGCTCCC
TGAGGTGATGTGACTTGTTTTGGGTGAGGGGGGTGAGGCAGGCTTGTACA
CGCTCAAGCAGGGGCTGCTGTTGGCATGGGATCATGGGATGCCTGCAGCG
AGAGCAGGCATAGACAGACCGTTATGATCATGATCTAGACGGTGGTGCTT
CATGGTGGTGACGGGCACGGTCGTCTGCTATTGAAAGCGCGACAGCAGCA
TCAGAACCTTTTTCCAGTTCTTCACGATGGTACTGGCAGCTTGGGTTCCG
TCTCGTCGATACGCTCAACACATACAGCGTGCAGCTGCACGTTGTTTGTC
CTACGGGCGTTTTGCCGAGAATTCGCCACGCGGAAGAGTAGCCCCTCCCA
CACAACTCAAGGTCCTCCCGATCCCGCCTCCACCCATTCCCCGTCAACAC
CCCTGTTTTTTCTCCGAACTGTGCCGTTTTGTAGCCAGTGGGGTTCGCCC
CGTACTCTCTGCAGTCTCTCAACACACCAGAGTCGATCGGAAGGATAATG
ATATTCCACCAGCCTCGGGTGCACCCCGTGCGGGCGGGGCGGTTTCAGGT
GAATATGTGGTGGGAGAACAGCTGTGATGGCACACTCCCGCGGCACTATT
ATTGTGGAGGCCGCCGATATTTCCCTGCCGAATGACGAATTTCAAAAAGA
CAGCCTTCCCCCGTACCATTCCGTAGCGGTTGCAGTATTGTTGGTCGTGC
GTCCTGATTCCGGTAAATATGATGCGACATACTGTGCAACTGTTGCAACG
TGTTGGAATCACTCGCGTACACCGACACACAAAACCTGTGGCCGCCTCTA
GAGTTGATTTGTCTCTTGTGCGCTCGCGGTACTGCCCATTGCGGCAGTTG
ACAGTGCTATTTGAACGAACGCGTGAGTGCTTTTCTCCCTCATCTTTGTG
CAGGTGGTGATTGGTGCAGCGTCGCGCGTGAAGTACAGCGTTAGCGTTAT
GGCCGCCACGGCCATCGATGCGTTTGCTGCTTTCGATGAGAGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10489:444..1486-

>mRNA_Ecto-sp13_S_contig10489.465.1 ID=mRNA_Ecto-sp13_S_contig10489.465.1|Name=mRNA_Ecto-sp13_S_contig10489.465.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=258bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10489:444..1486- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACGCCCGAGTTCGGGCAACGACAGGCCGAAGATGGAACGGGGCTCCC
TGAGCCAGTGGGGTTCGCCCCGTACTCTCTGCAGTCTCTCAACACACCAG
AGTCGATCGGAAGGATAATGATATTCCACCAGCCTCGGGTGCACCCCGTG
CGGGCGGGGCGGTTTCAGGTGGTGATTGGTGCAGCGTCGCGCGTGAAGTA
CAGCGTTAGCGTTATGGCCGCCACGGCCATCGATGCGTTTGCTGCTTTCG
ATGAGAGC
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