mRNA_Ecto-sp13_S_contig10488.464.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig10488.464.1
Unique Name	mRNA_Ecto-sp13_S_contig10488.464.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig10488.464.1 vs. uniprot
Match: D7G7P0_ECTSI (Glycine/D-amino acid oxidase-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7P0_ECTSI)

HSP 1 Score: 204 bits (519), Expect = 6.130e-66
Identity = 103/104 (99.04%), Postives = 104/104 (100.00%), Query Frame = 1

Query:    1 LLDKKSLGLVNAYQPSLTSTWMFQKSMSVGVGERVDANLIVNLLANNFKSMDKLGNPVLKPFLQDVVQFGPLARVLAGVTLDAPLSIPPLLLHVGIVPLADWIG 312
            LLDKKSLGLVNAYQPSLTSTWMFQKSMSVGVGERVDANLIV+LLANNFKSMDKLGNPVLKPFLQDVVQFGPLARVLAGVTLDAPLSIPPLLLHVGIVPLADWIG
Sbjct:   38 LLDKKSLGLVNAYQPSLTSTWMFQKSMSVGVGERVDANLIVDLLANNFKSMDKLGNPVLKPFLQDVVQFGPLARVLAGVTLDAPLSIPPLLLHVGIVPLADWIG 141

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BLAST of mRNA_Ecto-sp13_S_contig10488.464.1 vs. uniprot
Match: A0A6H5L433_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L433_9PHAE)

HSP 1 Score: 199 bits (505), Expect = 2.330e-58
Identity = 100/104 (96.15%), Postives = 102/104 (98.08%), Query Frame = 1

Query:    1 LLDKKSLGLVNAYQPSLTSTWMFQKSMSVGVGERVDANLIVNLLANNFKSMDKLGNPVLKPFLQDVVQFGPLARVLAGVTLDAPLSIPPLLLHVGIVPLADWIG 312
            LLDKKSLGLVNAYQPSLTSTWMFQKSMSVGVGERV ANLIV+LLANNF+SMDKLGNPVLKPFLQDVVQFGPLARVL GVTLDAPLSIPPLLLHVGIVPLADWIG
Sbjct:  504 LLDKKSLGLVNAYQPSLTSTWMFQKSMSVGVGERVGANLIVDLLANNFRSMDKLGNPVLKPFLQDVVQFGPLARVLVGVTLDAPLSIPPLLLHVGIVPLADWIG 607

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BLAST of mRNA_Ecto-sp13_S_contig10488.464.1 vs. uniprot
Match: A0A7R9YS56_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9YS56_9CHLO)

HSP 1 Score: 115 bits (288), Expect = 6.010e-31
Identity = 54/101 (53.47%), Postives = 72/101 (71.29%), Query Frame = 1

Query:    4 LDKKSLGLVNAYQPSLTSTWMFQKSMSVGVGERVDANLIVNLLANNFKSMDKLGNPVLKPFLQDVVQFGPLARVLAGVTLDAPLSIPPLLLHVGIVPLADW 306
            LDK+SLG ++AY P L++ WM Q++MS   G+  D  LI  +L+ NF +M+ LG PV+KPFLQDV+QFGPL + +    +  PLSIP LL+HVG  PLADW
Sbjct:   23 LDKESLGAIHAYNPGLSAAWMLQRAMSARPGQLPDKQLINRMLSGNFAAMEGLGEPVMKPFLQDVIQFGPLLQTMGAQMVRDPLSIPGLLMHVGPAPLADW 123

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BLAST of mRNA_Ecto-sp13_S_contig10488.464.1 vs. uniprot
Match: A0A8J4AY36_9CHLO (Uncharacterized protein n=3 Tax=Volvox TaxID=3066 RepID=A0A8J4AY36_9CHLO)

HSP 1 Score: 122 bits (306), Expect = 2.720e-30
Identity = 57/103 (55.34%), Postives = 79/103 (76.70%), Query Frame = 1

Query:    4 LDKKSLGLVNAYQPSLTSTWMFQKSMSVGVGERVDANLIVNLLANNFKSMDKLGNPVLKPFLQDVVQFGPLARVLAGVTLDAPLSIPPLLLHVGIVPLADWIG 312
            LD++SL LV+AY P L+S+WM QK+MSV  GE+   +LI  +LA NFK+M++LG+PV+KPFLQDV++FGP+ R +    L  PLSIP L+ HVG +PL +W+G
Sbjct:  474 LDRESLALVHAYNPGLSSSWMMQKAMSVRKGEQPPPDLINRMLAGNFKAMERLGDPVMKPFLQDVIKFGPMMRTMTAQMLTDPLSIPGLISHVGPMPLLEWLG 576

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BLAST of mRNA_Ecto-sp13_S_contig10488.464.1 vs. uniprot
Match: A0A150GR87_GONPE (Uncharacterized protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GR87_GONPE)

HSP 1 Score: 120 bits (301), Expect = 7.450e-30
Identity = 56/103 (54.37%), Postives = 76/103 (73.79%), Query Frame = 1

Query:    4 LDKKSLGLVNAYQPSLTSTWMFQKSMSVGVGERVDANLIVNLLANNFKSMDKLGNPVLKPFLQDVVQFGPLARVLAGVTLDAPLSIPPLLLHVGIVPLADWIG 312
            +D+ SLGLV+AY P L+S+WM QK+MSV +G+     LI  +LA NFK+M++LG PV+KPFLQDV+QFGP+ + +    L  PLSIP L+ HVG  PL +W+G
Sbjct:  358 VDRGSLGLVHAYNPGLSSSWMMQKAMSVRLGDTPSPQLINRMLAGNFKAMERLGEPVMKPFLQDVIQFGPMVQTMGAQMLTDPLSIPGLIAHVGPGPLLEWLG 460

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BLAST of mRNA_Ecto-sp13_S_contig10488.464.1 vs. uniprot
Match: D8THU2_VOLCA (Uncharacterized protein (Fragment) n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8THU2_VOLCA)

HSP 1 Score: 118 bits (296), Expect = 2.740e-29
Identity = 57/103 (55.34%), Postives = 75/103 (72.82%), Query Frame = 1

Query:    4 LDKKSLGLVNAYQPSLTSTWMFQKSMSVGVGERVDANLIVNLLANNFKSMDKLGNPVLKPFLQDVVQFGPLARVLAGVTLDAPLSIPPLLLHVGIVPLADWIG 312
            LD+ SL LV +Y P L+S+WM QK+MSV  GE+   +LI  +LA NFK+M++LG+PV+KPFLQDVVQFGP+ R +A   L  P SIP L+ HVG  PL +W+ 
Sbjct:  319 LDRGSLSLVQSYNPGLSSSWMMQKAMSVRRGEQPPPDLINRMLAGNFKAMERLGDPVMKPFLQDVVQFGPMMRTMAAQILTDPASIPSLIRHVGPAPLLEWLS 421

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BLAST of mRNA_Ecto-sp13_S_contig10488.464.1 vs. uniprot
Match: A0A8J9RAY4_9CHLO (Uncharacterized protein n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9RAY4_9CHLO)

HSP 1 Score: 118 bits (295), Expect = 8.500e-29
Identity = 56/102 (54.90%), Postives = 70/102 (68.63%), Query Frame = 1

Query:    4 LDKKSLGLVNAYQPSLTSTWMFQKSMSVGVGERVDANLIVNLLANNFKSMDKLGNPVLKPFLQDVVQFGPLARVLAGVTLDAPLSIPPLLLHVGIVPLADWI 309
            LDK SL  VNAY P L+  WM Q++MSV  GER D N I +LLA NF +M + G+PVLKPFLQDVVQ+GPL   L    L  PL +P +  HVG++P+ DW+
Sbjct:  464 LDKDSLAQVNAYNPGLSGAWMLQRAMSVRPGERPDPNFINSLLAKNFAAMQRFGDPVLKPFLQDVVQYGPLGLTLVSQMLSDPLFVPAIFRHVGVLPMLDWL 565

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BLAST of mRNA_Ecto-sp13_S_contig10488.464.1 vs. uniprot
Match: A0A7S4DCS5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DCS5_HETAK)

HSP 1 Score: 117 bits (293), Expect = 1.440e-28
Identity = 55/103 (53.40%), Postives = 73/103 (70.87%), Query Frame = 1

Query:    4 LDKKSLGLVNAYQPSLTSTWMFQKSMSVGVGERVDANLIVNLLANNFKSMDKLGNPVLKPFLQDVVQFGPLARVLAGVTLDAPLSIPPLLLHVGIVPLADWIG 312
            L ++ L LVNAYQP+L+  WMFQK+MSV VG+R    ++V  L NNF +M+  G+PVL+PFLQDVVQF  L + L    +  PL++PPLL HVG+  L DW+G
Sbjct:  398 LSREDLALVNAYQPNLSGAWMFQKAMSVAVGQRAAPGIVVRTLQNNFGAMNSFGDPVLRPFLQDVVQFDLLLKTLVQAFILDPLAVPPLLFHVGLPALIDWMG 500

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BLAST of mRNA_Ecto-sp13_S_contig10488.464.1 vs. uniprot
Match: A0A5P8NA30_DUNSA (Lycopene cyclase family protein CruP n=2 Tax=Dunaliella TaxID=3044 RepID=A0A5P8NA30_DUNSA)

HSP 1 Score: 116 bits (291), Expect = 3.430e-28
Identity = 54/102 (52.94%), Postives = 75/102 (73.53%), Query Frame = 1

Query:    4 LDKKSLGLVNAYQPSLTSTWMFQKSMSVGVGERVDANLIVNLLANNFKSMDKLGNPVLKPFLQDVVQFGPLARVLAGVTLDAPLSIPPLLLHVGIVPLADWI 309
            LDK SLGL++AY PSL+S WM QK+MS+  G+    +LI  +L  NF +M+++G+PV+KPFLQDV+QFGPL   ++   ++ P  +PPLL HVG  PLADW+
Sbjct:  476 LDKGSLGLIHAYNPSLSSAWMMQKAMSLRPGQSTPPDLINRMLGGNFSAMEEMGDPVMKPFLQDVMQFGPLVSTISKQMVNDPAFVPPLLAHVGPGPLADWL 577

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BLAST of mRNA_Ecto-sp13_S_contig10488.464.1 vs. uniprot
Match: A0A7S3PA49_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3PA49_9STRA)

HSP 1 Score: 110 bits (275), Expect = 1.030e-27
Identity = 53/104 (50.96%), Postives = 73/104 (70.19%), Query Frame = 1

Query:    1 LLDKKSLGLVNAYQPSLTSTWMFQKSMSVGVGERVDANLIVNLLANNFKSMDKLGNPVLKPFLQDVVQFGPLARVLAGVTLDAPLSIPPLLLHVGIVPLADWIG 312
            LL K+ LG +NAY P+L++TWMFQ+SMSV +G+ VD+  +  LLA NF+ MD+ G   +KPFLQDVV+F  L   LAG  +  P  +P ++ HVG+  LADW+G
Sbjct:   83 LLHKEDLGKINAYTPNLSATWMFQRSMSVRMGQSVDSKFVNRLLATNFEQMDQAGLRTIKPFLQDVVRFDGLVSSLAGSFVADPTFMPQIIAHVGVPALADWLG 186

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig10488.464.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig10488.464.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7G7P0_ECTSI	6.130e-66	99.04	Glycine/D-amino acid oxidase-like protein n=1 Tax=...	[more]
A0A6H5L433_9PHAE	2.330e-58	96.15	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A7R9YS56_9CHLO	6.010e-31	53.47	Hypothetical protein (Fragment) n=1 Tax=Chlamydomo...	[more]
A0A8J4AY36_9CHLO	2.720e-30	55.34	Uncharacterized protein n=3 Tax=Volvox TaxID=3066 ...	[more]
A0A150GR87_GONPE	7.450e-30	54.37	Uncharacterized protein n=1 Tax=Gonium pectorale T...	[more]
D8THU2_VOLCA	2.740e-29	55.34	Uncharacterized protein (Fragment) n=1 Tax=Volvox ...	[more]
A0A8J9RAY4_9CHLO	8.500e-29	54.90	Uncharacterized protein n=1 Tax=Coccomyxa sp. Obi ...	[more]
A0A7S4DCS5_HETAK	1.440e-28	53.40	Hypothetical protein n=1 Tax=Heterosigma akashiwo ...	[more]
A0A5P8NA30_DUNSA	3.430e-28	52.94	Lycopene cyclase family protein CruP n=2 Tax=Dunal...	[more]
A0A7S3PA49_9STRA	1.030e-27	50.96	Hypothetical protein n=1 Tax=Amphora coffeiformis ...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig10488	contig	Ecto-sp13_S_contig10488:5017..5815 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Taxonomic scope	Viridiplantae
Stop	0
Start	0
Seed ortholog score	118.2
Seed ortholog evalue	2.2e-24
Seed eggNOG ortholog	3067.XP_002946130.1
Model size	312
Hectar predicted targeting category	other localisation
Exons	2
EggNOG OGs	28PI8@1,2QW6A@2759,34K15@3041,37M1W@33090
Cds size	312
Best tax level	Chlorophyta
Best eggNOG OG	NA\|NA\|NA

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681462534.0245678-CDS-Ecto-sp13_S_contig10488:5016..5169	1681462534.0245678-CDS-Ecto-sp13_S_contig10488:5016..5169	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig10488 5017..5169 -
1681462534.0359573-CDS-Ecto-sp13_S_contig10488:5656..5815	1681462534.0359573-CDS-Ecto-sp13_S_contig10488:5656..5815	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig10488 5657..5815 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig10488.464.1	prot_Ecto-sp13_S_contig10488.464.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig10488 5017..5815 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig10488:5017..5815-
coding sequence from alignment at Ecto-sp13_S_contig10488:5017..5815-

protein sequence of mRNA_Ecto-sp13_S_contig10488.464.1

>prot_Ecto-sp13_S_contig10488.464.1 ID=prot_Ecto-sp13_S_contig10488.464.1|Name=mRNA_Ecto-sp13_S_contig10488.464.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=104bp
LLDKKSLGLVNAYQPSLTSTWMFQKSMSVGVGERVDANLIVNLLANNFKS
MDKLGNPVLKPFLQDVVQFGPLARVLAGVTLDAPLSIPPLLLHVGIVPLA
DWIG

mRNA from alignment at Ecto-sp13_S_contig10488:5017..5815-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig10488.464.1 ID=mRNA_Ecto-sp13_S_contig10488.464.1|Name=mRNA_Ecto-sp13_S_contig10488.464.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=799bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10488:5017..5815- (Ectocarpus species13 EcNAP12_S_4_19m)
CTACTGGACAAGAAGTCGCTCGGCCTGGTGAACGCCTACCAGCCCTCACT
GACCTCGACGTGGATGTTCCAGAAGTCGATGAGCGTTGGGGTCGGAGAGA
GGGTGGACGCCAACCTCATCGTGAACCTCCTCGCGAACAACTTCAAGTCC
ATGGACAAGGTGAGTTTTTCTTCGTGTTGTGTGCTACTGCTGTACGCTGC
ACGCTTGGGGAGATGTCGCTCAAGGTGCTATGTAGACACGGAATCCCTCA
CGTGTGGTGGTGGTGGCGGGTAAGTCGGAACAATTCAAGGGGGTCTGCAG
ACGAGATTTGGCGAGCCTGGGCACTGTAGGTACACTGCTGACGAACCTCT
GGTATTTTCTGTATGTCAAAAGGAATAGGTTGCTGTGTTCGTTTCAGAAA
ATTGTGTTTCGGCGACATTGACGCCATTCCCGCTCGCCGTCCTCTCGGAT
GTGCTGCTTCTTGGTTGATACGGTTGATGTGCAATGTTCTTTTCACATCA
AATTCGCAGTGAAGGAGGATTATGAGCACCCCAATCGCTTTCTCTTTCGA
TTAAGAGCCGCTCCCGCAGCATGAGATGACGCGTCGCGCCATCCACCGAC
ATCCTTCGTCGCACCCTCTCCCGCCGTCGTTCCGTGAACACTATAGCTGG
GAAACCCGGTGCTGAAGCCCTTCTTGCAAGACGTGGTGCAGTTCGGGCCT
CTGGCGAGGGTGCTGGCCGGCGTTACCCTGGACGCCCCGTTGTCGATCCC
GCCGCTGCTCCTGCACGTCGGGATCGTTCCCCTGGCGGACTGGATAGGT

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10488:5017..5815-

>mRNA_Ecto-sp13_S_contig10488.464.1 ID=mRNA_Ecto-sp13_S_contig10488.464.1|Name=mRNA_Ecto-sp13_S_contig10488.464.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=312bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10488:5017..5815- (Ectocarpus species13 EcNAP12_S_4_19m)
CTACTGGACAAGAAGTCGCTCGGCCTGGTGAACGCCTACCAGCCCTCACT
GACCTCGACGTGGATGTTCCAGAAGTCGATGAGCGTTGGGGTCGGAGAGA
GGGTGGACGCCAACCTCATCGTGAACCTCCTCGCGAACAACTTCAAGTCC
ATGGACAAGCTGGGAAACCCGGTGCTGAAGCCCTTCTTGCAAGACGTGGT
GCAGTTCGGGCCTCTGGCGAGGGTGCTGGCCGGCGTTACCCTGGACGCCC
CGTTGTCGATCCCGCCGCTGCTCCTGCACGTCGGGATCGTTCCCCTGGCG
GACTGGATAGGT