mRNA_Ecto-sp13_S_contig10483.461.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10483.461.1
Unique NamemRNA_Ecto-sp13_S_contig10483.461.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig10483.461.1 vs. uniprot
Match: D8LDH9_ECTSI (Centrin n=4 Tax=Eukaryota TaxID=2759 RepID=D8LDH9_ECTSI)

HSP 1 Score: 200 bits (509), Expect = 1.200e-63
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 1
Query:    4 AATSKRGGAKSKKFELTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXXXXEFLEMMTSKMSEKDSREEILKAFRLFDDDETGKISFRNLKRVAKELGENMTDEELQ 405
            AATSKRGGAKSKKFELTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXXXXEFLEMMTSKMSEKDSREEILKAFRLFDDDETGKISFRNLKRVAKELGENMTDEELQ
Sbjct:    2 AATSKRGGAKSKKFELTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXXXXEFLEMMTSKMSEKDSREEILKAFRLFDDDETGKISFRNLKRVAKELGENMTDEELQ 135          
BLAST of mRNA_Ecto-sp13_S_contig10483.461.1 vs. uniprot
Match: A0A813A1S0_SYMMI (Calmodulin n=15 Tax=Sar TaxID=2698737 RepID=A0A813A1S0_SYMMI)

HSP 1 Score: 186 bits (471), Expect = 7.020e-58
Identity = 125/133 (93.98%), Postives = 128/133 (96.24%), Query Frame = 1
Query:    7 ATSKRGGAKSKKFELTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXXXXEFLEMMTSKMSEKDSREEILKAFRLFDDDETGKISFRNLKRVAKELGENMTDEELQ 405
            A  + GG KSKKFELTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXXXX FLEMMT+KMSE+DSREEILKAFRLFDDDETGKISFRNLKRVAKELGENMTDEELQ
Sbjct:    2 AAKRAGGGKSKKFELTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXXXXXFLEMMTAKMSERDSREEILKAFRLFDDDETGKISFRNLKRVAKELGENMTDEELQ 134          
BLAST of mRNA_Ecto-sp13_S_contig10483.461.1 vs. uniprot
Match: A0A1V9ZCQ4_9STRA (Caltractin n=6 Tax=Stramenopiles TaxID=33634 RepID=A0A1V9ZCQ4_9STRA)

HSP 1 Score: 185 bits (470), Expect = 1.250e-57
Identity = 123/126 (97.62%), Postives = 124/126 (98.41%), Query Frame = 1
Query:   28 AKSKKFELTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXXXXEFLEMMTSKMSEKDSREEILKAFRLFDDDETGKISFRNLKRVAKELGENMTDEELQ 405
            AK+KKFELTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXX  EFLEMMTSKMSEKDSREEILKAFRLFDDDETGKISFRNLKRVAKELGENMTDEELQ
Sbjct:   16 AKNKKFELTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXXFTEFLEMMTSKMSEKDSREEILKAFRLFDDDETGKISFRNLKRVAKELGENMTDEELQ 141          
BLAST of mRNA_Ecto-sp13_S_contig10483.461.1 vs. uniprot
Match: A0A024GNG8_9STRA (Uncharacterized protein n=21 Tax=Stramenopiles TaxID=33634 RepID=A0A024GNG8_9STRA)

HSP 1 Score: 181 bits (460), Expect = 4.550e-56
Identity = 120/130 (92.31%), Postives = 125/130 (96.15%), Query Frame = 1
Query:   16 KRGGAKSKKFELTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXXXXEFLEMMTSKMSEKDSREEILKAFRLFDDDETGKISFRNLKRVAKELGENMTDEELQ 405
            K   AK+KKFELTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXX  EFLEMMT+KMSEKDS+EEI+KAFRLFDDDETGKI+FRNLKRVAKELGENMTDEELQ
Sbjct:   15 KGNAAKTKKFELTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXXFTEFLEMMTTKMSEKDSKEEIIKAFRLFDDDETGKITFRNLKRVAKELGENMTDEELQ 144          
BLAST of mRNA_Ecto-sp13_S_contig10483.461.1 vs. uniprot
Match: A0A3R7A958_9STRA (Uncharacterized protein n=4 Tax=Aphanomyces TaxID=100860 RepID=A0A3R7A958_9STRA)

HSP 1 Score: 185 bits (470), Expect = 1.030e-55
Identity = 123/126 (97.62%), Postives = 124/126 (98.41%), Query Frame = 1
Query:   28 AKSKKFELTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXXXXEFLEMMTSKMSEKDSREEILKAFRLFDDDETGKISFRNLKRVAKELGENMTDEELQ 405
            AK+KKFELTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXX  EFLEMMTSKMSEKDSREEILKAFRLFDDDETGKISFRNLKRVAKELGENMTDEELQ
Sbjct:  164 AKNKKFELTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXXFTEFLEMMTSKMSEKDSREEILKAFRLFDDDETGKISFRNLKRVAKELGENMTDEELQ 289          
BLAST of mRNA_Ecto-sp13_S_contig10483.461.1 vs. uniprot
Match: A0A0M0JBM6_9EUKA (Centrin n=4 Tax=Eukaryota TaxID=2759 RepID=A0A0M0JBM6_9EUKA)

HSP 1 Score: 177 bits (450), Expect = 1.130e-54
Identity = 123/133 (92.48%), Postives = 129/133 (96.99%), Query Frame = 1
Query:    7 ATSKRGGAKSKKFELTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXXXXEFLEMMTSKMSEKDSREEILKAFRLFDDDETGKISFRNLKRVAKELGENMTDEELQ 405
            AT+K+GG K+ K ELTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEP XXXXXXXXXXXXXXXXXXXXXXEFL+MMT+KMSEKDSREEILKAFRLFDDDETGKISF+NLKRVAKELGENMTDEELQ
Sbjct:    4 ATAKKGG-KTGKAELTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPXXXXXXXXXXXXXXXXXXXXXXXEFLQMMTAKMSEKDSREEILKAFRLFDDDETGKISFKNLKRVAKELGENMTDEELQ 135          
BLAST of mRNA_Ecto-sp13_S_contig10483.461.1 vs. uniprot
Match: A0A8J2SHF6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SHF6_9STRA)

HSP 1 Score: 181 bits (460), Expect = 2.980e-54
Identity = 125/133 (93.98%), Postives = 126/133 (94.74%), Query Frame = 1
Query:    7 ATSKRGGAKSKKFELTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXXXXEFLEMMTSKMSEKDSREEILKAFRLFDDDETGKISFRNLKRVAKELGENMTDEELQ 405
            AT   G   SKKFELTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXXXX FLEMMT+KMSEKDSREEILKAFRLFDDDETGKISFRNLKRVAKELGENMTDEELQ
Sbjct:   76 ATMAPGKKSSKKFELTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXXXXXFLEMMTAKMSEKDSREEILKAFRLFDDDETGKISFRNLKRVAKELGENMTDEELQ 208          
BLAST of mRNA_Ecto-sp13_S_contig10483.461.1 vs. uniprot
Match: A0A7S3C3I2_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3C3I2_9EUKA)

HSP 1 Score: 175 bits (444), Expect = 1.400e-53
Identity = 120/129 (93.02%), Postives = 124/129 (96.12%), Query Frame = 1
Query:   19 RGGAKSKKFELTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXXXXEFLEMMTSKMSEKDSREEILKAFRLFDDDETGKISFRNLKRVAKELGENMTDEELQ 405
            +G  K  K ELTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXXXXEFL+MMT+KMSEKDSREEILKAFRLFDDDETGKISF+NLKRVAKELGENMTDEELQ
Sbjct:   20 KGRGKGGKPELTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXXXXEFLQMMTAKMSEKDSREEILKAFRLFDDDETGKISFKNLKRVAKELGENMTDEELQ 148          
BLAST of mRNA_Ecto-sp13_S_contig10483.461.1 vs. uniprot
Match: A0A3R6VX05_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6VX05_9STRA)

HSP 1 Score: 185 bits (470), Expect = 5.500e-53
Identity = 123/126 (97.62%), Postives = 124/126 (98.41%), Query Frame = 1
Query:   28 AKSKKFELTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXXXXEFLEMMTSKMSEKDSREEILKAFRLFDDDETGKISFRNLKRVAKELGENMTDEELQ 405
            AK+KKFELTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXX  EFLEMMTSKMSEKDSREEILKAFRLFDDDETGKISFRNLKRVAKELGENMTDEELQ
Sbjct:  465 AKNKKFELTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXXFTEFLEMMTSKMSEKDSREEILKAFRLFDDDETGKISFRNLKRVAKELGENMTDEELQ 590          
BLAST of mRNA_Ecto-sp13_S_contig10483.461.1 vs. uniprot
Match: A0A5A8D4X3_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8D4X3_CAFRO)

HSP 1 Score: 172 bits (437), Expect = 1.140e-52
Identity = 115/130 (88.46%), Postives = 121/130 (93.08%), Query Frame = 1
Query:   13 SKRGGAKSKKFELTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXXXXEFLEMMTSKMSEKDSREEILKAFRLFDDDETGKISFRNLKRVAKELGENMTDEEL 402
            S RG  K  KFELTEEQ+QEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPK   XXXXXXXXXXXXXXXXXXX FL+MMT+KMSEKDSREEILKAFRLFDDDETGKISF+NLKRVAKELGE+MTD+EL
Sbjct:    7 SARGARKGGKFELTEEQRQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKKAEXXXXXXXXXXXXXXXXXXXXFLDMMTAKMSEKDSREEILKAFRLFDDDETGKISFKNLKRVAKELGESMTDDEL 136          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10483.461.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDH9_ECTSI1.200e-63100.00Centrin n=4 Tax=Eukaryota TaxID=2759 RepID=D8LDH9_... [more]
A0A813A1S0_SYMMI7.020e-5893.98Calmodulin n=15 Tax=Sar TaxID=2698737 RepID=A0A813... [more]
A0A1V9ZCQ4_9STRA1.250e-5797.62Caltractin n=6 Tax=Stramenopiles TaxID=33634 RepID... [more]
A0A024GNG8_9STRA4.550e-5692.31Uncharacterized protein n=21 Tax=Stramenopiles Tax... [more]
A0A3R7A958_9STRA1.030e-5597.62Uncharacterized protein n=4 Tax=Aphanomyces TaxID=... [more]
A0A0M0JBM6_9EUKA1.130e-5492.48Centrin n=4 Tax=Eukaryota TaxID=2759 RepID=A0A0M0J... [more]
A0A8J2SHF6_9STRA2.980e-5493.98Hypothetical protein (Fragment) n=1 Tax=Pelagomona... [more]
A0A7S3C3I2_9EUKA1.400e-5393.02Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A3R6VX05_9STRA5.500e-5397.62Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A5A8D4X3_CAFRO1.140e-5288.46Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10483contigEcto-sp13_S_contig10483:1977..4182 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score190.7
Seed ortholog evalue4.6e-46
Seed eggNOG ortholog4787.PITG_13132T0
Preferred nameCETN1
Model size411
KEGG koko:K10840,ko:K16465,ko:K16466
KEGG TC1.I.1
KEGG Pathwayko03420,map03420
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000086,GO:0000109,GO:0000226,GO:0000278,GO:0000715,GO:0000922,GO:0003674,GO:0005488,GO:0005509,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005813,GO:0005814,GO:0005815,GO:0005819,GO:0005829,GO:0005856,GO:0005929,GO:0006139,GO:0006259,GO:0006281,GO:0006289,GO:0006294,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007098,GO:0007099,GO:0007276,GO:0007283,GO:0007346,GO:0008017,GO:0008092,GO:0008150,GO:0008152,GO:0009266,GO:0009408,GO:0009628,GO:0009987,GO:0010389,GO:0010564,GO:0015630,GO:0015631,GO:0016043,GO:0019953,GO:0022402,GO:0022406,GO:0022414,GO:0022607,GO:0030030,GO:0030031,GO:0031023,GO:0031683,GO:0031974,GO:0031981,GO:0032391,GO:0032465,GO:0032501,GO:0032504,GO:0032795,GO:0032991,GO:0033554,GO:0034605,GO:0034622,GO:0034641,GO:0035869,GO:0036064,GO:0042995,GO:0043005,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044450,GO:0044463,GO:0044464,GO:0044703,GO:0044770,GO:0044772,GO:0044782,GO:0044839,GO:0044877,GO:0046483,GO:0046872,GO:0048232,GO:0048609,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051276,GO:0051298,GO:0051302,GO:0051640,GO:0051641,GO:0051704,GO:0051716,GO:0051726,GO:0060271,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070911,GO:0070925,GO:0071704,GO:0071824,GO:0071840,GO:0071942,GO:0090304,GO:0097458,GO:0097711,GO:0097730,GO:0097731,GO:0097733,GO:0098534,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:0140056,GO:1901360,GO:1901987,GO:1901990,GO:1902749,GO:1903047,GO:1990391
Exons3
EggNOG free text desc.EF-hand domain
EggNOG OGs3QE54@4776,COG5126@1,KOG0028@2759
Ec32 ortholog descriptioncentrin
Ec32 orthologEc-15_000530.1
Cds size411
COG Functional cat.T
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko03036,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462533.7928991-CDS-Ecto-sp13_S_contig10483:1976..20881681462533.7928991-CDS-Ecto-sp13_S_contig10483:1976..2088Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10483 1977..2088 +
1681462533.8052032-CDS-Ecto-sp13_S_contig10483:3489..36441681462533.8052032-CDS-Ecto-sp13_S_contig10483:3489..3644Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10483 3490..3644 +
1681462533.813902-CDS-Ecto-sp13_S_contig10483:4038..41821681462533.813902-CDS-Ecto-sp13_S_contig10483:4038..4182Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10483 4039..4182 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10483.461.1prot_Ecto-sp13_S_contig10483.461.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10483 1977..4182 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10483.461.1

>prot_Ecto-sp13_S_contig10483.461.1 ID=prot_Ecto-sp13_S_contig10483.461.1|Name=mRNA_Ecto-sp13_S_contig10483.461.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=137bp
QAATSKRGGAKSKKFELTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMR
ALGFEPKKEEIKKMISDIDKDGSGTIDFQEFLEMMTSKMSEKDSREEILK
AFRLFDDDETGKISFRNLKRVAKELGENMTDEELQVL
back to top

mRNA from alignment at Ecto-sp13_S_contig10483:1977..4182+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10483.461.1 ID=mRNA_Ecto-sp13_S_contig10483.461.1|Name=mRNA_Ecto-sp13_S_contig10483.461.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2206bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10483:1977..4182+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGCGGCTACATCCAAGCGCGGAGGCGCCAAGTCGAAGAAGTTCGAGCT GACGGAGGAACAGAAGCAGGAGATCAGGGAAGCGTTCGATCTCTTCGACA CGGATGGATCCGGTGAGTTACGTAAGGCCGATTTTGCCCTTCCCTGGCGT GTGGCTCTCTAGGACGCGTGGTCAATGGTCTAACCGCTATGGCATGCAAA ACATAAGAGCACGCCCCCCCCCCTGGCATGTGGCTGCAACAGTTCCGAGT TCCGATTGATACGTTGTTTGCAGCGACTAAGATTGTCAACAAACATGGAC GTCTCCTCGTTGCTGTATGTATCATTCATCCTTGTCGACGTGATTCATGC GTGTGTGCCTTCGCGATTGTGTGCACACATGCAAAAGCCGGTTCTCGAGG AGGAGGCTGAAAAATGTCAGACTGACTCAAGTCACGTAAGGGTTAAACAG CAGCTATTTCGCTTCCAAAGTTCCAAATCCGAAGACCTAGAACCTTGATT TGCAGCCAATGGAGGATCATTTTTGGATAGCTGGAAAACCGCTGGCAAAA AAAAGGTGGCAGCGAATTGCTTCCAAATTTGGAAATCTGCAAAGTCGGAA TATGGAAATTTGGGAGCGAAACAGCTCTGTTTTAAAATGCCCCTAAGCAA GGACGACTGAATTGCTACTGCTTGCTGTCCATGTTGTCCTTATTGTCGTT GCCGATGTTGATATCCTACCTACGGGAAGGGTTTGGGTTGCCAAGATATG GTCACCAAAAGATCGGACAAGCTATGTGTCACATCTGCAGAAGAACCGAA TCTTGAACTGAAAACATACAGTACAAAGACCATTCACTATTATAATATTG TGAGACTTCAACCCATTACTTTTTTGATTGCTGTGGTATTATCTCGAACG AGTAGTCTCTCTTGGATTGTACGGAGTATGCAATTTTCTAACGATACTAT TTCATTCATGCGTACCATCATTGACGCCCTGGCCGTTATTGTCCGAGCAA GCTCACCAACCGCCGTGAAAGCTCTCGTAGCGTTACGCAGCCGGCGGTTG ATTGTGTTTGGGTAGAACAAGAGCTTAACAGCAGTTATACACGAAATGAG TTAAGGAGGTAAATATTGAATTCGTCAAGAAAAGTACATTGTACAAGAAC TCGCACCCCACTACAACGTGCTTTCGACGTTGACACCATCGACCGACCAC TTTGCCCACGTCCAATACGATGGGAAACACACACACACACACACACACAA GAAAGCACTCCAAAACGCTGTAGAGTGCAAGGTAACAGCCTTGCTAAACG CGAGCAGTTTTCCTCTGTTGCAACCGTTTCTGTCTTTGATCCGGAGGATA GTTTAGCCTCCCCCATACTGCTCCCTCACGGGGTCCCAGTTCATGGAAGA TGGAAGTGTTTTGTGTTTTCAACCGAACTAAGACTGACGTCTTTTCATTC GTCAGCCGGTTAGCGTGGTCGATACTAATAATAAAACACGCACACACACA CACAAATTTACAGGAACCATCGATGCGAAAGAGCTAAAGGTGGCAATGCG AGCGCTAGGCTTCGAGCCCAAGAAGGAAGAGATCAAGAAAATGATCAGCG ACATCGACAAGGACGGCTCCGGCACGATCGATTTCCAGGAGTTCTTGGAA ATGATGACATCGAAGATGGTGAGTGGTGGGTCCGGACGGAACGCCGTACA CATTTCGCTCTTGAGATGGTGAGTGGTCGGTCCGGACATGGAACGTAACG CCATATGCATTTTCCAAGAGATCTTTATGATGTCGAAGATGGTGAGTGGT CGGTCCGGACGTGGGACGTAACGCTAAAGAGATCCTGGAAGCTAGTTGTC CGGTCTTTTTTCTTGGCCGAAATTTTTGAATCGCAAGCGCTCTTCTTGTT TTTGTCATACTCCACCTGTCTGAATGTGAGCGTGCTTTATTTTTTCTCTC ATTATTGTATAGCACAAAAAATCCATCTCTATCGATAGGGTCTAGGATAA ATTAGAAATGAATCCATGGCGTCAGCGAAAGCACTTCCTTTTGTTCGTTG CTGCCGTTTCAGAGCGAGAAGGATTCGAGGGAAGAGATCCTGAAGGCGTT TCGGCTGTTCGATGACGACGAGACCGGCAAGATCTCGTTCCGCAACCTCA AGAGGGTGGCGAAGGAGCTAGGGGAGAACATGACGGACGAGGAGCTGCAG GTATTG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10483:1977..4182+

>mRNA_Ecto-sp13_S_contig10483.461.1 ID=mRNA_Ecto-sp13_S_contig10483.461.1|Name=mRNA_Ecto-sp13_S_contig10483.461.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=411bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10483:1977..4182+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGCGGCTACATCCAAGCGCGGAGGCGCCAAGTCGAAGAAGTTCGAGCT
GACGGAGGAACAGAAGCAGGAGATCAGGGAAGCGTTCGATCTCTTCGACA
CGGATGGATCCGGAACCATCGATGCGAAAGAGCTAAAGGTGGCAATGCGA
GCGCTAGGCTTCGAGCCCAAGAAGGAAGAGATCAAGAAAATGATCAGCGA
CATCGACAAGGACGGCTCCGGCACGATCGATTTCCAGGAGTTCTTGGAAA
TGATGACATCGAAGATGAGCGAGAAGGATTCGAGGGAAGAGATCCTGAAG
GCGTTTCGGCTGTTCGATGACGACGAGACCGGCAAGATCTCGTTCCGCAA
CCTCAAGAGGGTGGCGAAGGAGCTAGGGGAGAACATGACGGACGAGGAGC
TGCAGGTATTG
back to top