mRNA_Ecto-sp13_S_contig10479.454.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10479.454.1
Unique NamemRNA_Ecto-sp13_S_contig10479.454.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10479.454.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10479contigEcto-sp13_S_contig10479:3260..3926 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size667
Hectar predicted targeting categoryother localisation
Exons1
Cds size387
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462533.2247636-UTR-Ecto-sp13_S_contig10479:3259..34981681462533.2247636-UTR-Ecto-sp13_S_contig10479:3259..3498Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10479 3260..3498 +
1681462533.245405-UTR-Ecto-sp13_S_contig10479:3885..39261681462533.245405-UTR-Ecto-sp13_S_contig10479:3885..3926Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10479 3886..3926 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462533.2353964-CDS-Ecto-sp13_S_contig10479:3498..38851681462533.2353964-CDS-Ecto-sp13_S_contig10479:3498..3885Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10479 3499..3885 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10479.454.1prot_Ecto-sp13_S_contig10479.454.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10479 3499..3885 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10479.454.1

>prot_Ecto-sp13_S_contig10479.454.1 ID=prot_Ecto-sp13_S_contig10479.454.1|Name=mRNA_Ecto-sp13_S_contig10479.454.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=129bp
MSGGVWNDVFVVARISTSLQIRLEAKCYGTQSFLRNIKSSSRTPEPCAYV
FATLRQMSSFGSLERERKKGRWILGCRHATSGSSGKETARASCNSPCRQQ
TALEWPITLGPANKHTLGVGCRSPSEYA*
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mRNA from alignment at Ecto-sp13_S_contig10479:3260..3926+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10479.454.1 ID=mRNA_Ecto-sp13_S_contig10479.454.1|Name=mRNA_Ecto-sp13_S_contig10479.454.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=667bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10479:3260..3926+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGCAGGAGCCCCCCGAACCCGTAGAACAGGAAGGATAGATACTTGAGCC
ACCCTCTGCAGGCGCAACGCAAAATCAGCGGGCACAAATACATCGAAACG
GCATTAAAAAAATCCAGGAGGAAAAAACACGGGGAGAAGGCACCCGAAAC
CCAGCGGCTGGCGGTTCAAGGATAGAAGGAACCTTGTCCACACCACCAAC
CCTCCATCAACAGGAACCAATGAAAGTCGACATCAGTGTATGAGCGGTGG
TGTTTGGAACGACGTTTTTGTCGTGGCAAGGATCTCCACGTCGTTACAAA
TTCGCCTTGAAGCAAAATGTTATGGGACACAATCGTTTCTACGCAACATC
AAGAGTTCCTCCAGAACGCCCGAACCCTGCGCGTACGTGTTCGCTACCCT
GCGCCAGATGTCCTCGTTTGGTTCCTTAGAACGGGAGAGGAAAAAAGGTA
GGTGGATCCTGGGGTGTAGACACGCCACATCAGGTTCGAGCGGAAAGGAA
ACAGCACGAGCGAGCTGTAACTCTCCCTGCCGCCAACAGACAGCCCTCGA
ATGGCCCATCACGTTGGGCCCCGCTAACAAACATACCCTTGGGGTGGGTT
GTCGGAGTCCTTCCGAGTATGCATAGCCCGATAATATGACGGAGAGTACC
ATGGCCGCAGTTACGCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10479:3260..3926+

>mRNA_Ecto-sp13_S_contig10479.454.1 ID=mRNA_Ecto-sp13_S_contig10479.454.1|Name=mRNA_Ecto-sp13_S_contig10479.454.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=387bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10479:3260..3926+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGCGGTGGTGTTTGGAACGACGTTTTTGTCGTGGCAAGGATCTCCAC
GTCGTTACAAATTCGCCTTGAAGCAAAATGTTATGGGACACAATCGTTTC
TACGCAACATCAAGAGTTCCTCCAGAACGCCCGAACCCTGCGCGTACGTG
TTCGCTACCCTGCGCCAGATGTCCTCGTTTGGTTCCTTAGAACGGGAGAG
GAAAAAAGGTAGGTGGATCCTGGGGTGTAGACACGCCACATCAGGTTCGA
GCGGAAAGGAAACAGCACGAGCGAGCTGTAACTCTCCCTGCCGCCAACAG
ACAGCCCTCGAATGGCCCATCACGTTGGGCCCCGCTAACAAACATACCCT
TGGGGTGGGTTGTCGGAGTCCTTCCGAGTATGCATAG
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