mRNA_Ecto-sp13_S_contig10476.453.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10476.453.1
Unique NamemRNA_Ecto-sp13_S_contig10476.453.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10476.453.1 vs. uniprot
Match: D8LP31_ECTSI (EsV-1-213 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LP31_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 3.510e-12
Identity = 28/29 (96.55%), Postives = 29/29 (100.00%), Query Frame = -2 
Query:   75 HLDGAIRGWETDWRGVFRAINVPHRNIAW 161
            HLDGAIRGWETDWRGVFRAINVPHRNIA+
Sbjct:  260 HLDGAIRGWETDWRGVFRAINVPHRNIAY 288
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BLAST of mRNA_Ecto-sp13_S_contig10476.453.1 vs. uniprot
Match: A0A6H5JVT4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVT4_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 3.520e-12
Identity = 28/29 (96.55%), Postives = 29/29 (100.00%), Query Frame = -2 
Query:   75 HLDGAIRGWETDWRGVFRAINVPHRNIAW 161
            HLDGAIRGWETDWRGVFRAINVPHRNIA+
Sbjct:  260 HLDGAIRGWETDWRGVFRAINVPHRNIAY 288
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BLAST of mRNA_Ecto-sp13_S_contig10476.453.1 vs. uniprot
Match: A0A6H5L2T2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2T2_9PHAE)

HSP 1 Score: 48.1 bits (113), Expect = 5.860e-5
Identity = 17/27 (62.96%), Postives = 27/27 (100.00%), Query Frame = -1 
Query:    1 SLDPAGLNKKVDGGRMLDPTDPKAVEM 81
            ++DPAG+NKK++GG+MLDPTDPK++++
Sbjct:  430 NMDPAGMNKKIEGGKMLDPTDPKSIDL 456
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BLAST of mRNA_Ecto-sp13_S_contig10476.453.1 vs. uniprot
Match: A0A6H5K0T8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0T8_9PHAE)

HSP 1 Score: 48.1 bits (113), Expect = 5.860e-5
Identity = 17/27 (62.96%), Postives = 27/27 (100.00%), Query Frame = -1 
Query:    1 SLDPAGLNKKVDGGRMLDPTDPKAVEM 81
            ++DPAG+NKK++GG+MLDPTDPK++++
Sbjct:  430 NMDPAGMNKKIEGGKMLDPTDPKSIDL 456
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BLAST of mRNA_Ecto-sp13_S_contig10476.453.1 vs. uniprot
Match: B2KWI6_ECTSI (EsV-1-213-like protein 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=B2KWI6_ECTSI)

HSP 1 Score: 47.8 bits (112), Expect = 8.030e-5
Identity = 18/27 (66.67%), Postives = 26/27 (96.30%), Query Frame = -1 
Query:    1 SLDPAGLNKKVDGGRMLDPTDPKAVEM 81
            +LDPAG+NKK++GG+MLDPTDPK++ +
Sbjct:  427 NLDPAGMNKKIEGGKMLDPTDPKSIAL 453
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10476.453.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LP31_ECTSI3.510e-1296.55EsV-1-213 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LP... [more]
A0A6H5JVT4_9PHAE3.520e-1296.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L2T2_9PHAE5.860e-562.96Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0T8_9PHAE5.860e-562.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
B2KWI6_ECTSI8.030e-566.67EsV-1-213-like protein 2 n=1 Tax=Ectocarpus silicu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10476contigEcto-sp13_S_contig10476:198..795 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size163
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size162
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462533.1807797-CDS-Ecto-sp13_S_contig10476:197..2751681462533.1807797-CDS-Ecto-sp13_S_contig10476:197..275Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10476 198..275 +
1681462533.1905982-CDS-Ecto-sp13_S_contig10476:711..7951681462533.1905982-CDS-Ecto-sp13_S_contig10476:711..795Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10476 712..795 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10476.453.1prot_Ecto-sp13_S_contig10476.453.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10476 198..795 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10476.453.1

>prot_Ecto-sp13_S_contig10476.453.1 ID=prot_Ecto-sp13_S_contig10476.453.1|Name=mRNA_Ecto-sp13_S_contig10476.453.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=54bp
HLHRLGVRGIQHTPAIHLLVETGGVQAMFLCGTFIARNTPLQSVSQPRIA
PSK*
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mRNA from alignment at Ecto-sp13_S_contig10476:198..795+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10476.453.1 ID=mRNA_Ecto-sp13_S_contig10476.453.1|Name=mRNA_Ecto-sp13_S_contig10476.453.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=598bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10476:198..795+ (Ectocarpus species13 EcNAP12_S_4_19m)
CATCTCCACCGCCTTGGGGTCCGTGGGATCCAACATACGCCCGCCATCCA
CCTTCTTGTTGAGACCGGCGGGGTCCAGGTTGGAGCTGACGGTGTTTGCC
ATTTTGAGCCTTTTCCTCGTTTTCCAAAGCTGGCTGTCGAAGTGCGCCAT
GATCTCCGTTAGTTTCGCGCCGACACTAGCGTCGAAGAGCGTTGGGCCGC
CCTGCGGTGTGTTGCAAGCAGCCATCGCCGCGACGCCTGCTCTCTCTCCA
TACGTCAAATGTATGGAACCCAACACGGAGCCGTCCATACGGCCGACAGA
GTCCACGGGTCGCTGTCGGATTATGTCCAGACTCCCAACCACAGGTCCGC
ACTCGATCCCGTACTTTGTTTTTTCTGTGTACGTCCGAAACAGTGTAGCT
ATCCTCTCGGCGTCACCCGGGGCCGATTGGGTCGCCTTAAAAAGACCGTA
CGCGTCTCCTACGTGGAACCCCTCAATGTATTTGTCTTGGCACGCCCGCT
CCAACATTATGTAGGCTATGTTTCTGTGCGGTACGTTTATCGCACGAAAC
ACGCCCCTCCAGTCTGTCTCCCAGCCGCGGATAGCGCCGTCCAAGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10476:198..795+

>mRNA_Ecto-sp13_S_contig10476.453.1 ID=mRNA_Ecto-sp13_S_contig10476.453.1|Name=mRNA_Ecto-sp13_S_contig10476.453.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=162bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10476:198..795+ (Ectocarpus species13 EcNAP12_S_4_19m)
CATCTCCACCGCCTTGGGGTCCGTGGGATCCAACATACGCCCGCCATCCA
CCTTCTTGTTGAGACCGGCGGGGTCCAGGCTATGTTTCTGTGCGGTACGT
TTATCGCACGAAACACGCCCCTCCAGTCTGTCTCCCAGCCGCGGATAGCG
CCGTCCAAGTGA
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