mRNA_Ecto-sp13_S_contig10471.450.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10471.450.1
Unique NamemRNA_Ecto-sp13_S_contig10471.450.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10471.450.1 vs. uniprot
Match: D7FL06_ECTSI (TLDc domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FL06_ECTSI)

HSP 1 Score: 203 bits (516), Expect = 1.950e-59
Identity = 97/100 (97.00%), Postives = 98/100 (98.00%), Query Frame = 1 
Query:    1 LIVVEDSWGYVFGGFVAGSMKESQDYYGTGESFVYSFHPSFKAHRWTGANDYFCISSDSWLAMGGGGGGFAFQIDDELDAGESNPSETFGSPRLSSNEFF 300
            LIVVEDSWGYVFGGFVAGSMKESQ YYGTGESFVYSFHPSFK HRWTGANDYFCISSDSWLAMGGGGGGFAFQIDDELDAGESNPS+TFGSPRLSSNEFF
Sbjct:  653 LIVVEDSWGYVFGGFVAGSMKESQKYYGTGESFVYSFHPSFKGHRWTGANDYFCISSDSWLAMGGGGGGFAFQIDDELDAGESNPSDTFGSPRLSSNEFF 752
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BLAST of mRNA_Ecto-sp13_S_contig10471.450.1 vs. uniprot
Match: W7U6I5_9STRA (Oxidation resistance protein 1 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U6I5_9STRA)

HSP 1 Score: 128 bits (322), Expect = 1.610e-34
Identity = 61/100 (61.00%), Postives = 75/100 (75.00%), Query Frame = 1 
Query:    1 LIVVEDSWGYVFGGFVAGSMKESQDYYGTGESFVYSFHPSFKAHRWTGANDYFCISSDSWLAMGGGGGGFAFQIDDELDAGESNPSETFGSPRLSSNEFF 300
            L+V+EDSWGYVFGG+     + +  YYGTGESFV+ FHP F  ++WTG NDYF +S+   LAMGGGGG FAFQ+DDELD G S PS+T+G+ RLSS   F
Sbjct:  169 LLVIEDSWGYVFGGYCPCPFQNATGYYGTGESFVFKFHPQFTLYKWTGKNDYFILSNAQHLAMGGGGG-FAFQLDDELDTGVSGPSDTYGNTRLSSRHVF 267
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BLAST of mRNA_Ecto-sp13_S_contig10471.450.1 vs. uniprot
Match: A0A4D9DA04_9STRA (TLDc domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DA04_9STRA)

HSP 1 Score: 128 bits (322), Expect = 9.000e-33
Identity = 61/100 (61.00%), Postives = 75/100 (75.00%), Query Frame = 1 
Query:    1 LIVVEDSWGYVFGGFVAGSMKESQDYYGTGESFVYSFHPSFKAHRWTGANDYFCISSDSWLAMGGGGGGFAFQIDDELDAGESNPSETFGSPRLSSNEFF 300
            L+V+EDSWGYVFGG+     + +  YYGTGESFV+ FHP F  ++WTG NDYF +S+   LAMGGGGG FAFQ+DDELD G S PS+T+G+ RLSS   F
Sbjct:  436 LLVIEDSWGYVFGGYCPCPFQNATGYYGTGESFVFKFHPQFTLYKWTGKNDYFILSNAQHLAMGGGGG-FAFQLDDELDTGVSGPSDTYGNTRLSSRHVF 534
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BLAST of mRNA_Ecto-sp13_S_contig10471.450.1 vs. uniprot
Match: A0A482RX24_9ARCH (TLDc domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RX24_9ARCH)

HSP 1 Score: 127 bits (318), Expect = 3.610e-32
Identity = 58/100 (58.00%), Postives = 79/100 (79.00%), Query Frame = 1 
Query:    1 LIVVEDSWGYVFGGFVAGSMKESQDYYGTGESFVYSFHPSFKAHRWTGANDYFCISSDSWLAMGGGGGGFAFQIDDELDAGESNPSETFGSPRLSSNEFF 300
            L+V+EDSWGYVFGG+++  +++ + YYG+GESFV+S  P+ +A++WT  N++F +S    LAMGGGG GFA QIDDELD G SN S+T+ +P LSSNEFF
Sbjct:  445 LVVIEDSWGYVFGGYISPGLQDKKSYYGSGESFVFSVIPTIQAYKWTQKNNFFVLSHTEGLAMGGGGEGFAIQIDDELDTGVSNHSDTYDNPTLSSNEFF 544
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BLAST of mRNA_Ecto-sp13_S_contig10471.450.1 vs. uniprot
Match: A0A7S3LZX6_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3LZX6_9STRA)

HSP 1 Score: 122 bits (305), Expect = 2.430e-31
Identity = 58/100 (58.00%), Postives = 75/100 (75.00%), Query Frame = 1 
Query:    1 LIVVEDSWGYVFGGFVAGSMKESQDYYGTGESFVYSFHPSFKAHRWTGANDYFCISSDSWLAMGGGGGGFAFQIDDELDAGESNPSETFGSPRLSSNEFF 300
            +I++EDSWGYVFGGF+A  M+  Q YYG GESFV+S  P+ + H+WTG N+ F +S+    AMGGGG G+A Q+DDELD G SN S+TF +  LSS+EFF
Sbjct:  242 VILIEDSWGYVFGGFIAPLMQNKQGYYGNGESFVFSVVPTPRVHKWTGKNELFVLSNPHCFAMGGGGEGYAIQLDDELDTGVSNKSDTFNNNVLSSSEFF 341
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BLAST of mRNA_Ecto-sp13_S_contig10471.450.1 vs. uniprot
Match: A0A7S0SS73_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SS73_9STRA)

HSP 1 Score: 103 bits (257), Expect = 7.550e-26
Identity = 47/86 (54.65%), Postives = 64/86 (74.42%), Query Frame = 1 
Query:    1 LIVVEDSWGYVFGGFVAGSMKESQDYYGTGESFVYSFHPSFKAHRWTGANDYFCISSDSWLAMGGGGGGFAFQIDDELDAGESNPS 258
            +I++EDSWGY+FGGF++ S+     YYG GESFV++  P+ +   W+G N+ F +S+ + LAMGGGG GFAFQ+DDELD G SN S
Sbjct:   94 IILIEDSWGYIFGGFLSHSLDNKHIYYGDGESFVFTIAPTVQLFHWSGKNNLFVLSNSNCLAMGGGGEGFAFQLDDELDTGVSNKS 179
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BLAST of mRNA_Ecto-sp13_S_contig10471.450.1 vs. uniprot
Match: T1L3G8_TETUR (TLDc domain-containing protein n=1 Tax=Tetranychus urticae TaxID=32264 RepID=T1L3G8_TETUR)

HSP 1 Score: 96.7 bits (239), Expect = 5.200e-23
Identity = 46/100 (46.00%), Postives = 65/100 (65.00%), Query Frame = 1 
Query:    1 LIVVEDSWGYVFGGFVAGSMKESQDYYGTGESFVYSFHPSFKAHRWTGANDYFCISSDSWLAMGGGGGGFAFQIDDELDAGESNPSETFGSPRLSSNEFF 300
            L+V++D+ G VFG   + S++ S  +YGTGE+F++SF+P F+  RWTG N YF       +A G G G F   +D +L  G SNP +TFG+PRLS N+ F
Sbjct:   81 LLVIQDTDGSVFGALTSTSLRTSDHFYGTGETFLFSFYPEFRCFRWTGDNVYFIKGDTESIAFGAGDGSFGLWLDGDLYHGSSNPCQTFGNPRLSKNQDF 180
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BLAST of mRNA_Ecto-sp13_S_contig10471.450.1 vs. uniprot
Match: A0A835ZE27_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE27_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 8.370e-21
Identity = 44/80 (55.00%), Postives = 60/80 (75.00%), Query Frame = 1 
Query:    1 LIVVEDSWGYVFGGFVAGSMKESQDYYGTGESFVYSFHPS-FKAHRWTGANDYFCISSDSWLAMGGGGGGFAFQIDDELD 237
            L V+ED+WGY+FGGF   S+ +S  Y   G SFV+SFHP+ F+   W+GAN Y  +++D+ +AMGGG GGFAF++DDELD
Sbjct:  544 LFVIEDTWGYIFGGFAEVSLHDSHSYKECGTSFVFSFHPNGFQRWTWSGANPYVLLTNDTCIAMGGGDGGFAFRLDDELD 623
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BLAST of mRNA_Ecto-sp13_S_contig10471.450.1 vs. uniprot
Match: A0A821LVA6_9NEOB ((mimic poison frog) hypothetical protein n=1 Tax=Ranitomeya imitator TaxID=111125 RepID=A0A821LVA6_9NEOB)

HSP 1 Score: 89.0 bits (219), Expect = 9.550e-21
Identity = 47/100 (47.00%), Postives = 61/100 (61.00%), Query Frame = 1 
Query:    1 LIVVEDSWGYVFGGFVAGSMKESQDYYGTGESFVYSFHPSFKAHRWTGANDYFCISSDSWLAMGGGGGGFAFQIDDELDAGESNPSETFGSPRLSSNEFF 300
            L+VV+D  G VFGGF +  +K S ++YGTGE+F+YSF P  K  RWTG N++F       L  GG  G F   +D++L  G S   ETF +  LSSNE F
Sbjct:   13 LLVVKDDEGTVFGGFCSNELKVSPNFYGTGETFLYSFSPQLKVFRWTGDNNFFVRGDVKSLTFGGSNGNFGLWLDEDLYNGRSQWCETFNNNVLSSNEQF 112
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BLAST of mRNA_Ecto-sp13_S_contig10471.450.1 vs. uniprot
Match: A0A7S3PHQ1_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PHQ1_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 6.510e-20
Identity = 43/100 (43.00%), Postives = 67/100 (67.00%), Query Frame = 1 
Query:    1 LIVVEDSWGYVFGGFVAGSMKESQDYYGTGESFVYSFHPSFKAHRWTGANDYFCISSDSWLAMGGGGGGFAFQIDDELDAGESNPSETFGSPRLSSNEFF 300
            ++V++D  G +FGGF     +   +Y+GTGESF++SF  +F A+RWT  N YF ++++  +AMGGGG  F   +D++L  G S P ET+ +P L+S+E F
Sbjct:  124 ILVIKDVNGVIFGGFTPSKWRIEAEYFGTGESFLFSFKDAFNAYRWTEKNPYFMLANEDSIAMGGGGS-FGLFLDEDLKGGTSGPCETYDNPCLASDEDF 222
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10471.450.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FL06_ECTSI1.950e-5997.00TLDc domain-containing protein n=2 Tax=Ectocarpus ... [more]
W7U6I5_9STRA1.610e-3461.00Oxidation resistance protein 1 n=1 Tax=Nannochloro... [more]
A0A4D9DA04_9STRA9.000e-3361.00TLDc domain-containing protein n=1 Tax=Nannochloro... [more]
A0A482RX24_9ARCH3.610e-3258.00TLDc domain-containing protein n=1 Tax=archaeon Ta... [more]
A0A7S3LZX6_9STRA2.430e-3158.00Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S0SS73_9STRA7.550e-2654.65Hypothetical protein (Fragment) n=1 Tax=Chromulina... [more]
T1L3G8_TETUR5.200e-2346.00TLDc domain-containing protein n=1 Tax=Tetranychus... [more]
A0A835ZE27_9STRA8.370e-2155.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A821LVA6_9NEOB9.550e-2147.00(mimic poison frog) hypothetical protein n=1 Tax=R... [more]
A0A7S3PHQ1_9STRA6.510e-2043.00Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10471contigEcto-sp13_S_contig10471:2578..3463 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score204.5
Seed ortholog evalue2.3e-50
Seed eggNOG ortholog2880.D7FL06
Model size300
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.negative regulation of peptidyl-cysteine S-nitrosylation
EggNOG OGsCOG5142@1,KOG2372@2759
Cds size300
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462532.9678276-CDS-Ecto-sp13_S_contig10471:2577..26401681462532.9678276-CDS-Ecto-sp13_S_contig10471:2577..2640Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10471 2578..2640 +
1681462532.9795763-CDS-Ecto-sp13_S_contig10471:3226..34631681462532.9795763-CDS-Ecto-sp13_S_contig10471:3226..3463Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10471 3227..3463 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10471.450.1prot_Ecto-sp13_S_contig10471.450.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10471 2578..3463 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10471.450.1

>prot_Ecto-sp13_S_contig10471.450.1 ID=prot_Ecto-sp13_S_contig10471.450.1|Name=mRNA_Ecto-sp13_S_contig10471.450.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=100bp
LIVVEDSWGYVFGGFVAGSMKESQDYYGTGESFVYSFHPSFKAHRWTGAN
DYFCISSDSWLAMGGGGGGFAFQIDDELDAGESNPSETFGSPRLSSNEFF
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mRNA from alignment at Ecto-sp13_S_contig10471:2578..3463+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10471.450.1 ID=mRNA_Ecto-sp13_S_contig10471.450.1|Name=mRNA_Ecto-sp13_S_contig10471.450.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=886bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10471:2578..3463+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTGATCGTGGTGGAGGATAGCTGGGGGTACGTCTTTGGCGGCTTCGTGGC
CGGCTCGATGAAGGTACGCAGCACAGCGCACCCTGCAGCGGTTAGTGACC
CGATTTGGGCGATGAAAGGGACTTTGGAATGCCTTTCTTGACGTGGTTGT
CGTGTTTCCTACAAACGTGCGGCTCTCTGGCCAAGTTGTGCCAGACCATG
TTGTCAGAACTCGTACAAGCTCGCGCCACAACTTTATTTAATTTTGGACA
ACGCTCAAATGGTCACAACGATAAACAATTAAGGACCTGAAAACTTCACT
TCTTCCAAGGAAAACTATTATAGGTAGTGCGCACAATGCAGCATGCATGG
TTCACACTCATCCTTCCTGTTTGCTCGAGGTTTTTCCACCTGTGCAAGCC
CCCAGCCGCTCATGGCCGCGAGAGCGAACCCTCCTTTGTTGTCTCTGGAG
CTTCTGGCGCTGATCCGATGTGCTGTAGTTCCCAAAGATAACGCCTGACA
TTTCACCTGGTGTTTCTTGTTGACGGAGGTCGGTGGCAGACTTTAAAACT
ATTTCGACACTTCCATTCTAACCGGTAACCCCTTCGACCAGTGAAAATGT
GTCTTTTCCCTTTTGCTGACCCCCCCCCCCCTGCGCTTTGTTTGTCCAGG
AGAGCCAAGACTACTACGGCACTGGCGAGTCATTCGTGTACTCGTTCCAC
CCGTCCTTCAAGGCCCACCGCTGGACAGGAGCCAACGATTACTTCTGCAT
ATCGAGCGACTCGTGGCTGGCCATGGGCGGTGGCGGCGGCGGCTTCGCCT
TCCAGATCGACGACGAGCTCGACGCCGGAGAGAGCAATCCGAGCGAAACC
TTCGGAAGCCCTCGGCTGTCTTCGAACGAGTTTTTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10471:2578..3463+

>mRNA_Ecto-sp13_S_contig10471.450.1 ID=mRNA_Ecto-sp13_S_contig10471.450.1|Name=mRNA_Ecto-sp13_S_contig10471.450.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=300bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10471:2578..3463+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTGATCGTGGTGGAGGATAGCTGGGGGTACGTCTTTGGCGGCTTCGTGGC
CGGCTCGATGAAGGAGAGCCAAGACTACTACGGCACTGGCGAGTCATTCG
TGTACTCGTTCCACCCGTCCTTCAAGGCCCACCGCTGGACAGGAGCCAAC
GATTACTTCTGCATATCGAGCGACTCGTGGCTGGCCATGGGCGGTGGCGG
CGGCGGCTTCGCCTTCCAGATCGACGACGAGCTCGACGCCGGAGAGAGCA
ATCCGAGCGAAACCTTCGGAAGCCCTCGGCTGTCTTCGAACGAGTTTTTC
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