mRNA_Ecto-sp13_S_contig10468.444.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10468.444.1
Unique NamemRNA_Ecto-sp13_S_contig10468.444.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig10468.444.1 vs. uniprot
Match: D8LI68_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI68_ECTSI)

HSP 1 Score: 142 bits (357), Expect = 1.850e-37
Identity = 78/81 (96.30%), Postives = 80/81 (98.77%), Query Frame = 1
Query:    4 RALRDLSRKVTVLEVNEAVMARRFASIKEQLQVEAEARAASERDFLEMSTAGKTRVLYLEQWKAGASARLLRLQQRLDVSV 246
            RALRDLSRKV+VLEVNEAVMARRF S+KEQLQVEAEARAASERDFLEMSTAGKTRVLYLEQWKAGASARLLRLQQRLDVSV
Sbjct: 1023 RALRDLSRKVSVLEVNEAVMARRFTSVKEQLQVEAEARAASERDFLEMSTAGKTRVLYLEQWKAGASARLLRLQQRLDVSV 1103          
BLAST of mRNA_Ecto-sp13_S_contig10468.444.1 vs. uniprot
Match: A0A6H5KTB3_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTB3_9PHAE)

HSP 1 Score: 142 bits (357), Expect = 1.860e-37
Identity = 77/81 (95.06%), Postives = 80/81 (98.77%), Query Frame = 1
Query:    4 RALRDLSRKVTVLEVNEAVMARRFASIKEQLQVEAEARAASERDFLEMSTAGKTRVLYLEQWKAGASARLLRLQQRLDVSV 246
            RALRDLSRKVTVLEVNEAVMARRFAS+KEQLQVEAEARA SERDFL+MSTAGKTR+LYLEQWKAGASARLLRLQQRLDVSV
Sbjct:  653 RALRDLSRKVTVLEVNEAVMARRFASVKEQLQVEAEARAVSERDFLDMSTAGKTRILYLEQWKAGASARLLRLQQRLDVSV 733          
BLAST of mRNA_Ecto-sp13_S_contig10468.444.1 vs. uniprot
Match: A0A7S2SDN8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SDN8_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 9.440e-15
Identity = 44/79 (55.70%), Postives = 54/79 (68.35%), Query Frame = 1
Query:   10 LRDLSRKVTVLEVNEAVMARRFASIKEQLQVEAEARAASERDFLEMSTAGKTRVLYLEQWKAGASARLLRLQQRLDVSV 246
            L+ L RK   LE NE V+ RR AS++EQ+Q EAEA+  ++R  LE     K R+LYLE+WK GAS RL RLQ RLD SV
Sbjct:  179 LQALGRKAVALEANELVLRRRCASLEEQVQSEAEAKTGAQRTALEAEMELKARLLYLEEWKQGASERLERLQARLDDSV 257          
BLAST of mRNA_Ecto-sp13_S_contig10468.444.1 vs. uniprot
Match: A0A7S2SBV2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SBV2_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 2.450e-14
Identity = 44/79 (55.70%), Postives = 54/79 (68.35%), Query Frame = 1
Query:   10 LRDLSRKVTVLEVNEAVMARRFASIKEQLQVEAEARAASERDFLEMSTAGKTRVLYLEQWKAGASARLLRLQQRLDVSV 246
            L+ L RK   LE NE V+ RR AS++EQ+Q EAEA+  ++R  LE     K R+LYLE+WK GAS RL RLQ RLD SV
Sbjct:  296 LQALGRKAVALEANELVLRRRCASLEEQVQSEAEAKTGAQRTALEAEMELKARLLYLEEWKQGASERLERLQARLDDSV 374          
BLAST of mRNA_Ecto-sp13_S_contig10468.444.1 vs. uniprot
Match: A0A835Z5T3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5T3_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 2.090e-13
Identity = 41/80 (51.25%), Postives = 58/80 (72.50%), Query Frame = 1
Query:    4 RALRDLSRKVTVLEVNEAVMARRFASIKEQLQVEAEARAASERDFLEMSTAGKTRVLYLEQWKAGASARLLRLQQRLDVS 243
            R LR+L+R+VTV EVNE  +ARR A+++EQL++  EAR  +E D +E   A KTR+L+LEQ +AGA+ R+ RL   L+ S
Sbjct:  225 RLLRELTRRVTVFEVNEQELARRHANMEEQLRLANEARERAEGDLIEAEAAAKTRILFLEQHRAGAAERVARLTAELERS 304          
BLAST of mRNA_Ecto-sp13_S_contig10468.444.1 vs. uniprot
Match: A0A812W2G3_SYMMI (Cep290 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812W2G3_SYMMI)

HSP 1 Score: 67.4 bits (163), Expect = 6.420e-12
Identity = 38/79 (48.10%), Postives = 54/79 (68.35%), Query Frame = 1
Query:   10 LRDLSRKVTVLEVNEAVMARRFASIKEQLQVEAEARAASERDFLEMSTAGKTRVLYLEQWKAGASARLLRLQQRLDVSV 246
            +++ +RKVTV EVNEAV++R+F ++ EQ+  E   RA  E DF+EM    K R+L+LEQ+KA  S RL +L+  L  SV
Sbjct:   82 IKEYTRKVTVYEVNEAVLSRKFMALSEQMAEEQSLRARVEADFVEMEGTLKRRILFLEQYKAICSPRLDKLETELQYSV 160          
BLAST of mRNA_Ecto-sp13_S_contig10468.444.1 vs. uniprot
Match: A0A2R5G9X9_9STRA (Centrosomal protein of 290 kDa n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G9X9_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 8.530e-9
Identity = 32/75 (42.67%), Postives = 51/75 (68.00%), Query Frame = 1
Query:   13 RDLSRKVTVLEVNEAVMARRFASIKEQLQVEAEARAASERDFLEMSTAGKTRVLYLEQWKAGASARLLRLQQRLD 237
            +DL+RKV +LEVNE V+ARR+  + E+ +     + + + + ++  TA + RVLYLE+WKAGA A+L  +Q  +D
Sbjct:  903 KDLTRKVALLEVNEVVLARRYNLVVEEERSVRHEKESLQHEMVQAETALRERVLYLEEWKAGAQAQLDAMQTSMD 977          
BLAST of mRNA_Ecto-sp13_S_contig10468.444.1 vs. uniprot
Match: A0A7S1TUX8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TUX8_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 1.140e-8
Identity = 36/78 (46.15%), Postives = 50/78 (64.10%), Query Frame = 1
Query:   10 LRDLSRKVTVLEVNEAVMARRFASIKEQLQVEAEARAASERDFLEMSTAGKTRVLYLEQWKAGASARLLRLQQRLDVS 243
            L++ +RK T+LEVNEAV+ARR+ S++ QL  EA  R  SE+   E +   + R+LYLEQWKA A   +     RL+ S
Sbjct:  668 LKEQTRKCTLLEVNEAVLARRYRSLEAQLAQEAVRRRESEKALKEATVLWRHRILYLEQWKARAVGEMEVYAARLERS 745          
BLAST of mRNA_Ecto-sp13_S_contig10468.444.1 vs. uniprot
Match: A0A7R9U7L5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U7L5_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 4.510e-8
Identity = 33/78 (42.31%), Postives = 50/78 (64.10%), Query Frame = 1
Query:   10 LRDLSRKVTVLEVNEAVMARRFASIKEQLQVEAEARAASERDFLEMSTAGKTRVLYLEQWKAGASARLLRLQQRLDVS 243
            L++ +R+ T+LEVNEAV+ARR+ S++ QL  E + R  +E +  E +   + R+LYLEQWKA A   +     RL+ S
Sbjct:  209 LKEQTRRCTILEVNEAVLARRYRSLESQLAQEKQRRKEAETELKEATIIWRHRILYLEQWKARAVGEIEVYVARLERS 286          
BLAST of mRNA_Ecto-sp13_S_contig10468.444.1 vs. uniprot
Match: A0A7I8W7E1_9ANNE (DgyrCDS12430 n=1 Tax=Dimorphilus gyrociliatus TaxID=2664684 RepID=A0A7I8W7E1_9ANNE)

HSP 1 Score: 56.2 bits (134), Expect = 2.650e-7
Identity = 33/79 (41.77%), Postives = 49/79 (62.03%), Query Frame = 1
Query:   10 LRDLSRKVTVLEVNEAVMARRFASIKEQLQVEAEARAASERDFLEMSTAGKTRVLYLEQWKAGASARLLRLQQRLDVSV 246
            L DL+RK+TVL+VNE  + RRF ++ E  Q   +     + + +EM  A   R+ YL+++K  AS +L  LQ+RLD SV
Sbjct:  859 LADLTRKITVLKVNEKALTRRFTALSEMEQTCRKENTKLKNEMIEMEAAITDRISYLQRYKDMASFKLASLQKRLDDSV 937          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10468.444.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D8LI68_ECTSI1.850e-3796.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KTB3_9PHAE1.860e-3795.06Reverse transcriptase domain-containing protein n=... [more]
A0A7S2SDN8_9STRA9.440e-1555.70Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S2SBV2_9STRA2.450e-1455.70Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A835Z5T3_9STRA2.090e-1351.25Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A812W2G3_SYMMI6.420e-1248.10Cep290 protein n=1 Tax=Symbiodinium microadriaticu... [more]
A0A2R5G9X9_9STRA8.530e-942.67Centrosomal protein of 290 kDa n=1 Tax=Hondaea fer... [more]
A0A7S1TUX8_9STRA1.140e-846.15Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7R9U7L5_9STRA4.510e-842.31Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A7I8W7E1_9ANNE2.650e-741.77DgyrCDS12430 n=1 Tax=Dimorphilus gyrociliatus TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10468contigEcto-sp13_S_contig10468:1501..2045 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score60.8
Seed ortholog evalue3.3e-07
Seed eggNOG ortholog36331.EPrPI00000017529
Model size246
KEGG koko:K16533
Hectar predicted targeting categoryother localisation
Exons2
EggNOG OGs1MD2B@121069,29FR3@1,2RNWW@2759
Cds size246
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462532.5829692-CDS-Ecto-sp13_S_contig10468:1500..15991681462532.5829692-CDS-Ecto-sp13_S_contig10468:1500..1599Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10468 1501..1599 +
1681462532.5943356-CDS-Ecto-sp13_S_contig10468:1898..20451681462532.5943356-CDS-Ecto-sp13_S_contig10468:1898..2045Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10468 1899..2045 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10468.444.1prot_Ecto-sp13_S_contig10468.444.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10468 1501..2045 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10468.444.1

>prot_Ecto-sp13_S_contig10468.444.1 ID=prot_Ecto-sp13_S_contig10468.444.1|Name=mRNA_Ecto-sp13_S_contig10468.444.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=82bp
RRALRDLSRKVTVLEVNEAVMARRFASIKEQLQVEAEARAASERDFLEMS
TAGKTRVLYLEQWKAGASARLLRLQQRLDVSV
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mRNA from alignment at Ecto-sp13_S_contig10468:1501..2045+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10468.444.1 ID=mRNA_Ecto-sp13_S_contig10468.444.1|Name=mRNA_Ecto-sp13_S_contig10468.444.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=545bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10468:1501..2045+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGCAGAGCTCTCCGCGACCTGAGCCGTAAGGTTACCGTGTTGGAGGTCAA CGAGGCGGTCATGGCGAGGAGATTTGCCTCAATCAAGGAGCAGCTTCAGG TGGGGATGGCCGTGTCGCTTCTTGGTTCCTGTGCACATTTCATTTGACCG TTGACTACGCATCACCTTGGTTTGAGACAAACGCGCCGGGGCATTCATAC CCACGAAGTACCTTTTACAGAGGCCGAAATCATCGCACTGGATTAGTCAG CCGTTGATCAGTCTACTGGTTCGATTTCGGGTTTAGTTGCTACTGCATTT GACTATGCGTTGTCCTGTTTGAGCAGCGTCCTGCGTGACACTGTGACGGC GATAGTGGTACTCATATCCTCAAGAGTGTGTGTTGGTTGTTGCTTCAGGT GGAGGCCGAGGCAAGGGCGGCGTCCGAGCGGGATTTCCTAGAGATGTCGA CGGCGGGCAAGACGAGGGTGCTGTACCTGGAGCAGTGGAAGGCAGGCGCG TCGGCGAGGCTGCTACGGCTGCAGCAGAGGCTGGACGTCAGCGTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10468:1501..2045+

>mRNA_Ecto-sp13_S_contig10468.444.1 ID=mRNA_Ecto-sp13_S_contig10468.444.1|Name=mRNA_Ecto-sp13_S_contig10468.444.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=246bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10468:1501..2045+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGCAGAGCTCTCCGCGACCTGAGCCGTAAGGTTACCGTGTTGGAGGTCAA
CGAGGCGGTCATGGCGAGGAGATTTGCCTCAATCAAGGAGCAGCTTCAGG
TGGAGGCCGAGGCAAGGGCGGCGTCCGAGCGGGATTTCCTAGAGATGTCG
ACGGCGGGCAAGACGAGGGTGCTGTACCTGGAGCAGTGGAAGGCAGGCGC
GTCGGCGAGGCTGCTACGGCTGCAGCAGAGGCTGGACGTCAGCGTC
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