mRNA_Ecto-sp13_S_contig10466.443.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10466.443.1
Unique NamemRNA_Ecto-sp13_S_contig10466.443.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10466.443.1 vs. uniprot
Match: A0A6H5JR06_9PHAE (FMN protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR06_9PHAE)

HSP 1 Score: 209 bits (533), Expect = 1.980e-60
Identity = 114/121 (94.21%), Postives = 115/121 (95.04%), Query Frame = 1 
Query:    7 QKFMLEMIKVPKREMRLKGMLFKQLLQARQDDMRSMAGLINSACLDVRLSRRLKKLLGIILKLGNQLNEVGAQDAGQTTGFTLDSLLKLNTAKAFDKKTSILHYLVMLARRNDPTLLDFKD 369
            +KFMLEMIKVPKREMRLKGMLFKQLLQARQDDMRSMAGLINSACLDVRLSRRLKKLLGIILKLGNQLNE      GQTTGFTLDSLLKLNTAKAFDKKTSILHYLVMLARRNDPTLLDFKD
Sbjct: 3215 EKFMLEMIKVPKREMRLKGMLFKQLLQARQDDMRSMAGLINSACLDVRLSRRLKKLLGIILKLGNQLNE------GQTTGFTLDSLLKLNTAKAFDKKTSILHYLVMLARRNDPTLLDFKD 3329
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BLAST of mRNA_Ecto-sp13_S_contig10466.443.1 vs. uniprot
Match: D8LT97_ECTSI (Formin-like 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT97_ECTSI)

HSP 1 Score: 208 bits (530), Expect = 4.980e-60
Identity = 113/121 (93.39%), Postives = 115/121 (95.04%), Query Frame = 1 
Query:    7 QKFMLEMIKVPKREMRLKGMLFKQLLQARQDDMRSMAGLINSACLDVRLSRRLKKLLGIILKLGNQLNEVGAQDAGQTTGFTLDSLLKLNTAKAFDKKTSILHYLVMLARRNDPTLLDFKD 369
            +KFMLEMIKVPKRE+RLKGMLFKQLLQARQDDMRSMAGLINSACLDVRLSRRLKKLLGIILKLGNQLNE      GQTTGFTLDSLLKLNTAKAFDKKTSILHYLVMLARRNDPTLLDFKD
Sbjct: 2343 EKFMLEMIKVPKRELRLKGMLFKQLLQARQDDMRSMAGLINSACLDVRLSRRLKKLLGIILKLGNQLNE------GQTTGFTLDSLLKLNTAKAFDKKTSILHYLVMLARRNDPTLLDFKD 2457
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BLAST of mRNA_Ecto-sp13_S_contig10466.443.1 vs. uniprot
Match: A0A836C9A0_9STRA (FH2 domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9A0_9STRA)

HSP 1 Score: 152 bits (383), Expect = 1.950e-40
Identity = 84/121 (69.42%), Postives = 97/121 (80.17%), Query Frame = 1 
Query:    7 QKFMLEMIKVPKREMRLKGMLFKQLLQARQDDMRSMAGLINSACLDVRLSRRLKKLLGIILKLGNQLNEVGAQDAGQTTGFTLDSLLKLNTAKAFDKKTSILHYLVMLARRNDPTLLDFKD 369
            +KFMLEM  VP+R  R+K MLFK+ L  R D++R  AGL+ +AC DV+LS RLK+LL IILKLGN+LN+        TTGFTL+SLLKLNTAKAFDKKTSILHYLVMLA RNDPTLLDFKD
Sbjct:  597 EKFMLEMAAVPQRAPRIKAMLFKEQLFGRIDELRGTAGLVEAACDDVKLSLRLKRLLSIILKLGNELNQHA------TTGFTLESLLKLNTAKAFDKKTSILHYLVMLADRNDPTLLDFKD 711
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BLAST of mRNA_Ecto-sp13_S_contig10466.443.1 vs. uniprot
Match: A0A7S2XPA2_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XPA2_9STRA)

HSP 1 Score: 104 bits (259), Expect = 1.500e-23
Identity = 54/121 (44.63%), Postives = 82/121 (67.77%), Query Frame = 1 
Query:    7 QKFMLEMIKVPKREMRLKGMLFKQLLQARQDDMRSMAGLINSACLDVRLSRRLKKLLGIILKLGNQLNEVGAQDAGQTTGFTLDSLLKLNTAKAFDKKTSILHYLVMLARRNDPTLLDFKD 369
            +KFM+ M+ V   + +++ +LFK   ++   D+ S    +  +C ++  S RL+KLLGI+L +GN+LN  G  + G+   FTLDSLLKLN AKAFDKKT+ LHY+V++ +RN+  L+ FKD
Sbjct:   56 EKFMVAMMTVKHSKNKIRALLFKLQFESCMKDLMSDTTTVEKSCDELSNSIRLRKLLGIVLNVGNRLNTAGPSEKGKAGAFTLDSLLKLNQAKAFDKKTTFLHYVVLVVQRNNELLVRFKD 176
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BLAST of mRNA_Ecto-sp13_S_contig10466.443.1 vs. uniprot
Match: A0A7S4MH99_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MH99_9STRA)

HSP 1 Score: 104 bits (259), Expect = 1.570e-23
Identity = 56/121 (46.28%), Postives = 82/121 (67.77%), Query Frame = 1 
Query:    7 QKFMLEMIKVPKREMRLKGMLFKQLLQARQDDMRSMAGLINSACLDVRLSRRLKKLLGIILKLGNQLNEVGAQDAGQTTGFTLDSLLKLNTAKAFDKKTSILHYLVMLARRNDPTLLDFKD 369
            +KFM+ M+ V   + +L+ +LFK    +   ++   A  I  AC ++  S RL+KLLGI+L +GN+LN  G++  G+   FTLDSLLKLN AKAFDKKT+ LHY+V++ +RN+  L+ FKD
Sbjct:  292 EKFMVAMMTVRHSKRKLRALLFKLQFASCLQELEQEATTIERACDELSNSVRLRKLLGIVLNIGNRLNTAGSRAKGKAGAFTLDSLLKLNQAKAFDKKTTFLHYVVLVVQRNNELLIRFKD 412
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BLAST of mRNA_Ecto-sp13_S_contig10466.443.1 vs. uniprot
Match: A0A7R9WIX2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WIX2_9STRA)

HSP 1 Score: 102 bits (255), Expect = 4.800e-23
Identity = 55/121 (45.45%), Postives = 81/121 (66.94%), Query Frame = 1 
Query:    7 QKFMLEMIKVPKREMRLKGMLFKQLLQARQDDMRSMAGLINSACLDVRLSRRLKKLLGIILKLGNQLNEVGAQDAGQTTGFTLDSLLKLNTAKAFDKKTSILHYLVMLARRNDPTLLDFKD 369
            +KFM+ M+ V   + +L+ +LFK    +   ++      I  AC ++  S RL+KLLGI+L +GN+LN  G++  G+   FTLDSLLKLN AKAFDKKT+ LHY+V++ +RN+  L+ FKD
Sbjct:  321 EKFMVAMMTVRHSKRKLRALLFKLQFSSCLQELEHEGTTIERACDELSNSVRLRKLLGIVLNIGNRLNTAGSRAKGKAGAFTLDSLLKLNQAKAFDKKTTFLHYVVLVVQRNNELLIRFKD 441
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BLAST of mRNA_Ecto-sp13_S_contig10466.443.1 vs. uniprot
Match: A0A7S4W5J3_9STRA (Hypothetical protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4W5J3_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 9.150e-22
Identity = 56/122 (45.90%), Postives = 80/122 (65.57%), Query Frame = 1 
Query:    7 QKFMLEM--IKVPKREMRLKGMLFKQLLQARQDDMRSMAGLINSACLDVRLSRRLKKLLGIILKLGNQLNEVGAQDAGQTTGFTLDSLLKLNTAKAFDKKTSILHYLVMLARRNDPTLLDFK 366
            +KFM+ M  +K PK++MR   +LFK    +  +D+   A L+  AC ++  S R +KLLGI+L +GN+LN  G    G+   FT+DSLLKLN AKAFDKKT+ L Y+V++  RN+  L+ FK
Sbjct:  767 EKFMVAMMTVKYPKQKMR--ALLFKLQFASGIEDLEKDASLVEKACDELSQSVRFRKLLGIVLNIGNRLNTAGQSHKGKAGAFTIDSLLKLNQAKAFDKKTTFLQYIVLVVLRNNELLIRFK 886
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BLAST of mRNA_Ecto-sp13_S_contig10466.443.1 vs. uniprot
Match: A0A7S1Y767_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1Y767_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 2.210e-21
Identity = 53/121 (43.80%), Postives = 80/121 (66.12%), Query Frame = 1 
Query:    7 QKFMLEMIKVPKREMRLKGMLFKQLLQARQDDMRSMAGLINSACLDVRLSRRLKKLLGIILKLGNQLNEVGAQDAGQTTGFTLDSLLKLNTAKAFDKKTSILHYLVMLARRNDPTLLDFKD 369
            +KFM+ M+ V   + ++K +LFK    +  D + S A L+ ++C ++  S RL+KLLGI+L +GN+LN  G     +   F L+SLLKL+ AKAFDKKT+ LHY+V++ +RN+  LL F D
Sbjct:  236 EKFMVAMMTVKHAKRKVKALLFKLQFASCLDSLESDASLVETSCDELSNSIRLRKLLGIVLNIGNRLNTAGVSGKRKAGAFKLESLLKLSHAKAFDKKTTFLHYIVLVLQRNNELLLRFMD 356
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BLAST of mRNA_Ecto-sp13_S_contig10466.443.1 vs. uniprot
Match: A0A448ZQD1_9STRA (FH2 domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZQD1_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 3.200e-21
Identity = 51/121 (42.15%), Postives = 81/121 (66.94%), Query Frame = 1 
Query:    7 QKFMLEMIKVPKREMRLKGMLFKQLLQARQDDMRSMAGLINSACLDVRLSRRLKKLLGIILKLGNQLNEVGAQDAGQTTGFTLDSLLKLNTAKAFDKKTSILHYLVMLARRNDPTLLDFKD 369
            +KFM+ M+ V   + +++ +LFK       + +   A +I+++C ++  S RL++LLGIIL+ GN+LN  G    G+  GF+L+SL KL+ AKAFDKKT+ LHY+V++ +RN+  LL F D
Sbjct: 1722 EKFMVSMMTVKHAKRKIRALLFKLQFMTCMESIAKDAQMIDTSCDELVNSNRLRQLLGIILQFGNRLNTAGNSSKGKAGGFSLESLSKLSVAKAFDKKTTFLHYIVLIVQRNNELLLKFYD 1842
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BLAST of mRNA_Ecto-sp13_S_contig10466.443.1 vs. uniprot
Match: A0A448ZA09_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZA09_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 3.220e-21
Identity = 53/120 (44.17%), Postives = 80/120 (66.67%), Query Frame = 1 
Query:    7 QKFMLEMIKVPKREMRLKGMLFKQLLQARQDDMRSMAGLINSACLDVRLSRRLKKLLGIILKLGNQLNEVGAQDAGQTTGFTLDSLLKLNTAKAFDKKTSILHYLVMLARRNDPTLLDFK 366
            +K+M+ +++VP  E +L  M F+   + R  DM +   ++N AC  +R S + +KL+ +IL + NQ+N  G  +     GFTLD+LLKLN AKAFDKKTS+LHY+V L ++ND +LL F+
Sbjct: 1804 EKYMVTLMEVPDAEAKLHTMEFRNGFKTRFADMTASVRILNRACEQLRSSEKFRKLMAVILTVVNQINTGG--EGNLAMGFTLDALLKLNEAKAFDKKTSVLHYVVKLVKKNDESLLCFE 1921
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10466.443.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JR06_9PHAE1.980e-6094.21FMN protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D8LT97_ECTSI4.980e-6093.39Formin-like 2 n=1 Tax=Ectocarpus siliculosus TaxID... [more]
A0A836C9A0_9STRA1.950e-4069.42FH2 domain-containing protein (Fragment) n=1 Tax=T... [more]
A0A7S2XPA2_9STRA1.500e-2344.63Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S4MH99_9STRA1.570e-2346.28Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7R9WIX2_9STRA4.800e-2345.45Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A7S4W5J3_9STRA9.150e-2245.90Hypothetical protein n=3 Tax=Ditylum brightwellii ... [more]
A0A7S1Y767_9STRA2.210e-2143.80Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A448ZQD1_9STRA3.200e-2142.15FH2 domain-containing protein n=1 Tax=Pseudo-nitzs... [more]
A0A448ZA09_9STRA3.220e-2144.17Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10466contigEcto-sp13_S_contig10466:78..842 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score207.2
Seed ortholog evalue4.3e-51
Seed eggNOG ortholog2880.D8LT97
Model size369
KEGG koko:K04512,ko:K05745,ko:K10293,ko:K11238
KEGG Pathwayko04011,ko04310,ko04810,map04011,map04310,map04810
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003779,GO:0005488,GO:0005515,GO:0005522,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005886,GO:0005938,GO:0006928,GO:0006996,GO:0007010,GO:0007015,GO:0008064,GO:0008092,GO:0008150,GO:0008154,GO:0008289,GO:0009987,GO:0010638,GO:0015629,GO:0016020,GO:0016043,GO:0016477,GO:0022607,GO:0030029,GO:0030036,GO:0030041,GO:0030832,GO:0030833,GO:0030838,GO:0030865,GO:0030866,GO:0031254,GO:0031334,GO:0031344,GO:0031345,GO:0032153,GO:0032154,GO:0032155,GO:0032271,GO:0032273,GO:0032535,GO:0032956,GO:0032970,GO:0033043,GO:0034622,GO:0035091,GO:0040011,GO:0043167,GO:0043168,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043254,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0044877,GO:0045010,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048870,GO:0050789,GO:0050794,GO:0051015,GO:0051128,GO:0051129,GO:0051130,GO:0051179,GO:0051258,GO:0051493,GO:0051495,GO:0051674,GO:0060491,GO:0065003,GO:0065007,GO:0065008,GO:0071840,GO:0071944,GO:0090066,GO:0097435,GO:0098590,GO:0099568,GO:0110053,GO:0120032,GO:0120033,GO:0120035,GO:1902903,GO:1902905,GO:1904170,GO:1904171
Exons2
EggNOG free text desc.actin binding
EggNOG OGsKOG1922@1,KOG1922@2759
Cds size369
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03029,ko04121,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462532.5413613-CDS-Ecto-sp13_S_contig10466:77..3081681462532.5413613-CDS-Ecto-sp13_S_contig10466:77..308Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10466 78..308 +
1681462532.5543573-CDS-Ecto-sp13_S_contig10466:704..8421681462532.5543573-CDS-Ecto-sp13_S_contig10466:704..842Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10466 705..842 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10466.443.1prot_Ecto-sp13_S_contig10466.443.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10466 78..842 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10466.443.1

>prot_Ecto-sp13_S_contig10466.443.1 ID=prot_Ecto-sp13_S_contig10466.443.1|Name=mRNA_Ecto-sp13_S_contig10466.443.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=123bp
MYQKFMLEMIKVPKREMRLKGMLFKQLLQARQDDMRSMAGLINSACLDVR
LSRRLKKLLGIILKLGNQLNEVGAQDAGQTTGFTLDSLLKLNTAKAFDKK
TSILHYLVMLARRNDPTLLDFKD
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mRNA from alignment at Ecto-sp13_S_contig10466:78..842+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10466.443.1 ID=mRNA_Ecto-sp13_S_contig10466.443.1|Name=mRNA_Ecto-sp13_S_contig10466.443.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=765bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10466:78..842+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTATCAAAAGTTTATGCTGGAGATGATCAAGGTGCCGAAGCGCGAGAT
GCGTCTCAAGGGGATGCTGTTCAAGCAGCTGCTGCAGGCTAGGCAGGACG
ACATGCGATCCATGGCCGGGCTTATCAACTCGGCGTGTCTGGATGTGAGG
CTCAGCCGGCGCCTGAAGAAGCTCCTGGGAATAATCCTCAAGCTCGGGAA
CCAGCTCAATGAGGTAGGTGCCCAGGACGCTGTTGTTGTTGTTGTTGTTG
TTGTCGCGGCGGTGGTGTCAGTGGCGGGTAGCGGGGCGGTGAGAGTTGTG
GTTGCTGCTGCTTCTACTGCTGCTGTTGGTGTTGATGCTGCTGCTAAGTT
TTGTTGCTGGTGGTCTTGGCGCGGTACTTGCTGCTTCTTCGGTTGTTGTC
GTTGTTGTTGTTGTTGTTGTTGATGTGCAGTGGCTCGGTCGTCGCGGCTG
CATTTGTAATGAGCCATTAAGTTAAACACTCACGGTTTGTCGCCTCGGCC
GCTGTTTCGTGATTCGTGTCGTTGCCGTAGCTGTTGCTGTTGCTGTTGCT
GATGGTGTTACTGCCGTTGTTGATGCCAACCGCGCTTCCTTCGCTCCCGC
CGCTGGTTGTGGTTGCGCGTGACCCAGGGGCAAACCACGGGGTTCACCCT
AGACTCGCTCCTCAAGCTCAACACCGCAAAGGCGTTCGACAAGAAGACAA
GCATCCTGCACTACCTCGTCATGCTCGCCAGGAGGAACGATCCAACGCTC
CTCGACTTCAAGGAT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10466:78..842+

>mRNA_Ecto-sp13_S_contig10466.443.1 ID=mRNA_Ecto-sp13_S_contig10466.443.1|Name=mRNA_Ecto-sp13_S_contig10466.443.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=369bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10466:78..842+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTATCAAAAGTTTATGCTGGAGATGATCAAGGTGCCGAAGCGCGAGAT
GCGTCTCAAGGGGATGCTGTTCAAGCAGCTGCTGCAGGCTAGGCAGGACG
ACATGCGATCCATGGCCGGGCTTATCAACTCGGCGTGTCTGGATGTGAGG
CTCAGCCGGCGCCTGAAGAAGCTCCTGGGAATAATCCTCAAGCTCGGGAA
CCAGCTCAATGAGGTAGGTGCCCAGGACGCTGGGCAAACCACGGGGTTCA
CCCTAGACTCGCTCCTCAAGCTCAACACCGCAAAGGCGTTCGACAAGAAG
ACAAGCATCCTGCACTACCTCGTCATGCTCGCCAGGAGGAACGATCCAAC
GCTCCTCGACTTCAAGGAT
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