mRNA_Ecto-sp13_S_contig10460.439.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10460.439.1
Unique NamemRNA_Ecto-sp13_S_contig10460.439.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10460.439.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10460contigEcto-sp13_S_contig10460:415..4060 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size258
Hectar predicted targeting categoryother localisation
Exons2
Cds size255
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462532.2906444-CDS-Ecto-sp13_S_contig10460:414..6341681462532.2906444-CDS-Ecto-sp13_S_contig10460:414..634Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10460 415..634 +
1681462532.3001623-CDS-Ecto-sp13_S_contig10460:4024..40591681462532.3001623-CDS-Ecto-sp13_S_contig10460:4024..4059Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10460 4025..4059 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10460.439.1prot_Ecto-sp13_S_contig10460.439.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10460 415..4059 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10460.439.1

>prot_Ecto-sp13_S_contig10460.439.1 ID=prot_Ecto-sp13_S_contig10460.439.1|Name=mRNA_Ecto-sp13_S_contig10460.439.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=85bp
FRPRRKIRVANCSQVHRRDGGRPTGRGQVRGGSASAAGGDPHHSRRAPSC
QSGRPPPPGQPTTVSFTRARTSQGRGGRALKPGSR
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mRNA from alignment at Ecto-sp13_S_contig10460:415..4060+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10460.439.1 ID=mRNA_Ecto-sp13_S_contig10460.439.1|Name=mRNA_Ecto-sp13_S_contig10460.439.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3646bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10460:415..4060+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTCCGTCCGAGAAGGAAGATCCGGGTTGCAAATTGTTCCCAAGTTCATCG
AAGAGACGGAGGCCGGCCGACTGGCCGAGGTCAAGTAAGGGGGGGCAGTG
CTAGCGCAGCTGGCGGGGACCCTCATCATTCCCGTCGAGCCCCATCTTGC
CAGAGTGGACGACCTCCTCCCCCTGGTCAACCCACGACAGTTAGTTTTAC
GAGAGCCCGGACTTCACAAGGTGAGTTTTTCCGTGCTTGTATCTGTCGCT
GAAGGGGCAGCAGTATCGCAATAATGATTCGGTTTTGCGCCTTTGGCGAT
AGAGAAGCACGCTGCCCCCCCACCAAATCCCTCTTTGCTCCTGGCTAGAA
ACGAGTGCCTTCAACGAAGTTCGTTTTTAACCCGCGGACTTTCTCGTCTG
TTGTCCAAGTTTTGTGTCGGCTCCGCAAAAGTGAGAACTGAGGCTTGTTC
TCACCGATAATTGTGAAACTGAACCCTGTCCAAATGGTTCCTCCTGGTTT
CCCCACCGAACAAAAAGGGGGAAGGGTTGCGCAGCGCAAGAGTTTGTTAC
AACGTGGTGTTGTATTCTATATTGCCTTGTTGGGGTGGTTGATGTGATAT
TATGTTGGGGTGGTTGATGTGATACTAGTAGTCGTGGAAGTGTCACTCTC
CGTTGCTGCCAGATCATTCTGTTATTCCTTCTAAATTCCATGTTCGCTCC
GTGCTCACAACGAGAGAGAGAGCGAGAGGCCGGAAGACAGCAGTTATGTA
GTTACAGAGAGCATGTGCGACCTTCAAGACGTCGTCATTGGTCCGAATGC
CTACACCGAAGGGAAACGAAAACATTTTCGCGCAGCGCCCGCACAACGTT
CAACATACATACGCTCACTCACTTGCGCATGTTGTGTTCCTTGACATGCG
ATGTCGGACTACTTTTGTACATGCGACTTTGATGCCGTTTACTAAGGAAA
TCTCTTCGTTGCTGCTGTAGGGTTCCTGGGAGCAGCGTAGAGTTTCCGTG
AGGGCTTCCGTGGAAGAAAGTGGGTGGGTGCTGGTTGGATGACAAGCCTA
CGACCTTTTTTGACCGAAGGAACGAAGCAAGATTCCAGATTATAAGGAAG
CCGGCGAATATCGTCGGCGTTACTAGTCCCAAGCTGGCTTTTCCTTCTTG
GAACACCTACATGTACGAGAATGGACAGTTGTCTGTATTGCTCCGCTCCG
CACGTTCACTGGGTTGCCGGGCCCGTGGGGCTGCCATGAAATGACTCGTA
TTGCAGCATCAAGTGGCAGATGCTACGCGGTAGGGACCAACCCAATCTTC
CACCATCATCATCATCGGAGACAGGTACAGTATCACGTCTAAACACCAAA
GCTTTTGAAACTGCACAAATTTCAATCGATTTCACTTGTCTTCGCTCACA
CCTTGTTCTTGCGCATTTTTCTCGGTTTCATTATATACAACATAAATGCT
TCACAATCAAATGGTCGATCTTTCCTTACAGAGGGTCCCCTCAGCTACCG
TAGGAAGCATGCGCCTAAATAAACACTGGCGACTAGGTCTCTACGATAAA
TCAGAAACGACGGTTAAGAACCACAGCTAGTTCACCTGTGAAACCTACGC
TCAACCTACATGTGCTCGACAACGGTGGCGGGCGGCAAAAGTAAGAACTT
GAGCGTCTACCCGAATTTGACTTTCGGTGATTGCAGACCCATTCTGTAGA
CCTTGCAAGAAGTGCTATTCATTGTACACGCCAATTCCACACAAACGAAC
GGATGCCACACATTCCCTCGTTGCCGAAACGACGGCACATAAAACAACAA
CAATTCGTGTACGCTACCTAGACCCATCCACGTAAAGCGCCCCCGAAACC
GAGCTCATTTATACCCTGAAAACATGAGGTTCTCCTCTATTTACCGTACA
TACATTCGTGTGTGTGACCATCATCTCCGATTCTAACGAGAACTTTTGTG
CGAATTAAAATAGACACGACAACGGCCAAACGGCATCGATGTAAGCATAA
CTCCGTGCTCTCCTCCGACCCATGTGGCCATCTCTCCAGCATCTACGATA
TCTACGATATACCATGCAGAAATAAACAAATAGAGAGCGGGAAAAACGCT
TCACGAAAAAGATATATCAAAGGGTTGACAACACAGCTCAGCGGTGGATC
CAACGTTAAGCCCCTGTATCTAAATGTTCTGTTATCGACGGTGGCGAGGG
AAAGTAAGAATTGAAACTACACGATTCTGAATTTCAGGCCCACCATTGCT
CGTGGCGTTCTCGCCGCAGCCTCACAAATCGCTTGTTCTGACGCAACCAG
CCTCGCAACCTTTTGCTACAAATTCGACGTTCCCCTTAGTTTTCGGCTCT
GGGAGAACGCGCCACTGCTCCGCTCCATTTGTGTCAAACGACGCCCATAT
TATTCCACGCTTCTTGCAAGACTACCGTATTCCGTTGAGCCTCGAACATG
ATGCCAGCGCAGTAAGTACTTCACTTGAACGCTTCGTCACTGAAAATAAC
ACAACAACTGCCACTCACAACAATCAATCACCACATCGACCTCACTTTCA
ACGCTCACGCCATGACGCGGCAACCGTCTATCCAGCGCCGCAAAGCCGCC
CTATACCCCCAACGTGAGAATCTTTTCCGCATGCGCGGCGACCACATCAT
GCGGGCACAGCGGATTCCCCGGGTGGCACTCATCGAACGTGGGCACGTAA
TCTTGACTCGCTGCACCGGCAATCTGCCGGAGGGAGCAATACTCCTCACG
TTTCCCGTACAGTCGAAACACCGCCAGGGCGGGGTAGATGCACAGCCGGG
TGTCGTACCTGAAAAAATTCAAGGGAGGGTGCCAGGGAGAGGTTCGTTCG
AAAAAAAATGAGAAACTTAGATGGAGCTAGGAACGCTTGCAGTTGAGTGG
CTGCGTTTGTTCGCTGGTGGTCCAACAGGGAGGGTGGCATGAAGAAGAAG
AGGTGTAGAGACAGACCATGTCTGGTATACTTCCGTCTTCTGGCTGGGGT
AGTGCCGCACTTAGTCGAGCCACAAGGAGCTCGCGACAACTTGCAATTGC
AACGGCAATTCGTACCGGAGGGGGGCAAGCAGCAGCACCGCACGGAGGTA
CAGTCGTTCAGCAGACGACGTTCCAAGTATCGGCCAGAGGTGCGTTGTGT
AACGCAGTTGAACCGCCAGCCAAGGTGGGTACCCTAGAGATTTGCCGGAG
CCCCTCGCGCTCAATTTCTCCTTGCTTCCGCTCACACAGCACATGTATGG
GAACGTACGAGACCTCTGGCCGCCATGAACGACGCGACGGCGTTGGTGGC
ACTTGGCTCGCGTTCAACATCGAGCCTGACTATTTGTGCACTCCCAAAAG
GTCTTGGTGGTGGTCATTTCCAAATTTCACTGTACAGTACCTTCGGGGGT
TACAGCAGGTAGTGGGTCCTTCCATGAGCATGGGCAGGTTACAAGGGCCA
TGTTTCGAGCAACCCACCTTGCTAAGCCTGGTAGTGTGTGGAACTGGCTG
AGCGCGAGCTCGGCGAGGGGAAGCAGGCCGTCCGCCCGTGAGAGCCGTGC
TTTCACCGCCATGAGCAAGCCTGACAACAACACCAACACCACCGCCCCCG
CCCCCGCCAGGACGAGGTGGTCGAGCTCTGAAGCCAGGTAGCCGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10460:415..4060+

>mRNA_Ecto-sp13_S_contig10460.439.1 ID=mRNA_Ecto-sp13_S_contig10460.439.1|Name=mRNA_Ecto-sp13_S_contig10460.439.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=255bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10460:415..4060+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTCCGTCCGAGAAGGAAGATCCGGGTTGCAAATTGTTCCCAAGTTCATCG
AAGAGACGGAGGCCGGCCGACTGGCCGAGGTCAAGTAAGGGGGGGCAGTG
CTAGCGCAGCTGGCGGGGACCCTCATCATTCCCGTCGAGCCCCATCTTGC
CAGAGTGGACGACCTCCTCCCCCTGGTCAACCCACGACAGTTAGTTTTAC
GAGAGCCCGGACTTCACAAGGACGAGGTGGTCGAGCTCTGAAGCCAGGTA
GCCGT
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