mRNA_Ecto-sp13_S_contig1046.437.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1046.437.1
Unique NamemRNA_Ecto-sp13_S_contig1046.437.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1046.437.1 vs. uniprot
Match: A0A6H5KH49_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH49_9PHAE)

HSP 1 Score: 231 bits (588), Expect = 4.440e-74
Identity = 114/115 (99.13%), Postives = 114/115 (99.13%), Query Frame = 1 
Query:  160 MAAAASKNEEKNVVGDQRNWEQRVTSELEVAKAWCENWGPLYEGATTQQQQLKSLEEKLKRMPGDQGTRTNYQLSFTGEAPFDEYPVGLTNQKPLRMEDVEELAKEMMVAQQKRR 504
            MAAAASKNEEKNVVGDQRNWEQRVTSELEVAKAWCENWGPLYEGATTQQQQLKSLEEKLKRMPGDQGTRTNYQLSFTG APFDEYPVGLTNQKPLRMEDVEELAKEMMVAQQKRR
Sbjct:    1 MAAAASKNEEKNVVGDQRNWEQRVTSELEVAKAWCENWGPLYEGATTQQQQLKSLEEKLKRMPGDQGTRTNYQLSFTGGAPFDEYPVGLTNQKPLRMEDVEELAKEMMVAQQKRR 115
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1046.437.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KH49_9PHAE4.440e-7499.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1046contigEcto-sp13_S_contig1046:4737..6464 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size836
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-01_004190.1
Cds size348
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462532.127858-UTR-Ecto-sp13_S_contig1046:4736..50651681462532.127858-UTR-Ecto-sp13_S_contig1046:4736..5065Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1046 4737..5065 -
1681462532.1525176-UTR-Ecto-sp13_S_contig1046:6305..64641681462532.1525176-UTR-Ecto-sp13_S_contig1046:6305..6464Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1046 6306..6464 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462532.1365504-CDS-Ecto-sp13_S_contig1046:5065..52311681462532.1365504-CDS-Ecto-sp13_S_contig1046:5065..5231Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1046 5066..5231 -
1681462532.1445496-CDS-Ecto-sp13_S_contig1046:6123..63051681462532.1445496-CDS-Ecto-sp13_S_contig1046:6123..6305Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1046 6124..6305 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1046.437.1prot_Ecto-sp13_S_contig1046.437.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1046 5066..6305 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1046.437.1

>prot_Ecto-sp13_S_contig1046.437.1 ID=prot_Ecto-sp13_S_contig1046.437.1|Name=mRNA_Ecto-sp13_S_contig1046.437.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=116bp
MAAAASKNEEKNVVGDQRNWEQRVTSELEVAKAWCENWGPLYEGATTQQQ
QLKSLEEKLKRMPGDQGTRTNYQLSFTGEAPFDEYPVGLTNQKPLRMEDV
EELAKEMMVAQQKRR*
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mRNA from alignment at Ecto-sp13_S_contig1046:4737..6464-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1046.437.1 ID=mRNA_Ecto-sp13_S_contig1046.437.1|Name=mRNA_Ecto-sp13_S_contig1046.437.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1728bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1046:4737..6464- (Ectocarpus species13 EcNAP12_S_4_19m)
CTCGATCTCTCTCTCAGATCTTGGACCGCGAGAAAGGAACGTGTGTGCGC
GTGAGAACGCTGCCGTGAGAGAGGGAGAGAATAGTGCGGAGCGTATATCG
ATTGTTCGAACACATCTGCCGTTGGGTTGGTGTTCTGTCGCTACAGCTAC
AGCAGTAGGATGGCGGCGGCCGCCTCCAAAAATGAAGAGAAGAACGTCGT
TGGAGATCAGCGGAATTGGGAGCAGAGAGTCACGTCCGAGCTAGAGGTCG
CCAAGGCGTGGTGCGAGAACTGGGGGCCGCTGTACGAAGGTGCTACGACG
CAACAGCAGCAGTTGAAATCGTTGGAGGAAAAACTCAAGCGGTGAGGGTC
CAACTCACCCGTCCATGCGACGGTGCATACACACCCCCTCGGACCGAGTT
GCAAAGGTCGATTGCTCCACGACCAACAGGGTGTGTCCAAATGTCAAACG
ATGCATTATGAGAAGGATCTGCTGTGGAGAAAATGCATATGTCAGAGACG
ATGCGTTGTATGCAATACTCGTTGCAGTGTTAAGTGACCATTCTTCTCGT
CAGACAACTTGTTTTTGAGGAGCTACAGCATGTTCCTGCCGTATCGACGC
ACGTATGTATGTATGTATGTATACTATACAAAAGACTAGGAGTTCTGAGT
AACAGGTCGCGAGTAACCCGACATGTTCCTGATGTAGATCTTCACTCTGG
TGATTTTCCACTGCTGCGACAGTTGTCGATCTTTCGTATGGGAGACTACG
ACGCCGCCAGAGAGTACTGTACGGACCTCCATATTACGGTGTATTCTGGA
CGTATCGGCTGGGGGTTGCACAGGAGGAGTTGCCGCAGAGAAGTTTATTC
TCCTCCACCTTCCTTCTGCGGTGCTTGCCTTAATTGATGTTTTTTACTTC
CAGAGGGGTTCAGCCGTTCCCTTTCCCTCGTTTAACGCGACGTCGAATGA
ATAGACTATATTCGTACCCATACAGTACGGCAGTCTAAATTGCCAGTTCC
TGCCCCCCAATGTCGAGGTCCGAAGCCACGTCCCATATGTAAACGTCAGA
AGATTGCGAGGCCATAAACTAAACAACTCAGCCTCGAATACGATTGTGTG
GCCGAGTAAGGCCGAGTTTGTATACATGTGTTTCGTGGCCAACGCGTTAC
TTTATTCTGCGTGATATTTGGCCTTCCGTAGGCTTGAACACTTCACCAAA
TCATTTTGTCTTGCCTTTCGCGTTCTTGTGCAGGATGCCTGGGGACCAAG
GGACGCGAACGAACTACCAACTTTCGTTCACCGGCGAAGCGCCATTCGAC
GAGTACCCTGTAGGACTCACCAACCAGAAGCCTCTCAGGATGGAGGACGT
CGAGGAACTAGCCAAGGAAATGATGGTTGCTCAGCAGAAGCGTAGATGAT
ACTGGCTGTGTGACGCATGTTGGGCGGCAGCTTCATCTAGGTGCTCAGAG
TTATCACGTCCGCAAGAAGTGAAGAACGGGCTCCTATTTTTCTCAACAGC
GAGGGTTAGGTGGCCATTTCGAGATCCTGTAGGTATACGCCCAGCGGAGC
GAGACCTTTGTATATGCGCTCTGGGTAAACGAACCCTTCGATTCAACAAC
CTCACAGCAGCAGTGAGTAGCAGCACAGAGCGCCGAAGTTGTTCACACAT
CGAACGAAGGGGCAAACTGAACACGCCAGCGACGGGAAAATGTACGAGGT
ACACAACGAACCTGCCGTGAAATCAAAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1046:4737..6464-

>mRNA_Ecto-sp13_S_contig1046.437.1 ID=mRNA_Ecto-sp13_S_contig1046.437.1|Name=mRNA_Ecto-sp13_S_contig1046.437.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=348bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1046:4737..6464- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGGCGGCCGCCTCCAAAAATGAAGAGAAGAACGTCGTTGGAGATCA
GCGGAATTGGGAGCAGAGAGTCACGTCCGAGCTAGAGGTCGCCAAGGCGT
GGTGCGAGAACTGGGGGCCGCTGTACGAAGGTGCTACGACGCAACAGCAG
CAGTTGAAATCGTTGGAGGAAAAACTCAAGCGGATGCCTGGGGACCAAGG
GACGCGAACGAACTACCAACTTTCGTTCACCGGCGAAGCGCCATTCGACG
AGTACCCTGTAGGACTCACCAACCAGAAGCCTCTCAGGATGGAGGACGTC
GAGGAACTAGCCAAGGAAATGATGGTTGCTCAGCAGAAGCGTAGATGA
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