mRNA_Ecto-sp13_S_contig10458.435.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10458.435.1
Unique NamemRNA_Ecto-sp13_S_contig10458.435.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10458.435.1 vs. uniprot
Match: D8LMW1_ECTSI (VASt domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMW1_ECTSI)

HSP 1 Score: 211 bits (536), Expect = 1.640e-54
Identity = 111/123 (90.24%), Postives = 113/123 (91.87%), Query Frame = 2 
Query:    2 EWGRSSLALLDVREETRRLSADLLQLDQAIGASRGGRRNAHGGAEAIDDLGNILREMEEKVNRISQRADGTLAALNETASQIRDATACPPAATAGAAAGNDHNTTPCEDVCDAFGSGSGGRSS 370
            EWGRSSLALLDVREETRRLS DLLQLDQAIGASRGGRRNAHG AEA+DDLG+ILREMEEKV RISQRADG L ALNETASQIRDA ACPPAATAGAAAGND NTTPCEDVC A GS SGGRSS
Sbjct:  868 EWGRSSLALLDVREETRRLSGDLLQLDQAIGASRGGRRNAHGVAEAVDDLGDILREMEEKVKRISQRADGALEALNETASQIRDAAACPPAATAGAAAGNDRNTTPCEDVCAASGSASGGRSS 990
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BLAST of mRNA_Ecto-sp13_S_contig10458.435.1 vs. uniprot
Match: A0A6H5KHE3_9PHAE (VASt domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHE3_9PHAE)

HSP 1 Score: 178 bits (451), Expect = 2.290e-43
Identity = 101/124 (81.45%), Postives = 104/124 (83.87%), Query Frame = 2 
Query:    2 EWGRSSLALLDVREETRRLSADLLQLDQAIGASRGGRRNAHGGAEAIDDLGNILREMEEKVNRISQRADGTLAALNETASQIRDATACPPAATAGAAAGNDHNTTPCEDVCDAFGSGSGGRSSS 373
            EWGRSSLALLDVREETRRLS DLLQLDQAIGAS GGRRNAHGGAEA+DDLG ILR ME KV RISQRADG LAAL+E ASQIRDATA       GAAA ND NTTPC+DVC A  SGSGGRSSS
Sbjct:  924 EWGRSSLALLDVREETRRLSGDLLQLDQAIGAS-GGRRNAHGGAEALDDLGYILRGMEGKVKRISQRADGALAALDEAASQIRDATA-------GAAAENDRNTTPCQDVCAASASGSGGRSSS 1039
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10458.435.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LMW1_ECTSI1.640e-5490.24VASt domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KHE3_9PHAE2.290e-4381.45VASt domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10458contigEcto-sp13_S_contig10458:3252..5598 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score112.1
Seed ortholog evalue1.1e-22
Seed eggNOG ortholog2880.D8LMW1
Model size1905
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.intracellular sterol transport
EggNOG OGsKOG1032@1,KOG1032@2759
Cds size207
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462531.986758-UTR-Ecto-sp13_S_contig10458:3251..47801681462531.986758-UTR-Ecto-sp13_S_contig10458:3251..4780Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10458 3252..4780 -
1681462532.0278068-UTR-Ecto-sp13_S_contig10458:5429..55981681462532.0278068-UTR-Ecto-sp13_S_contig10458:5429..5598Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10458 5430..5598 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462532.0037317-CDS-Ecto-sp13_S_contig10458:4780..49751681462532.0037317-CDS-Ecto-sp13_S_contig10458:4780..4975Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10458 4781..4975 -
1681462532.0184581-CDS-Ecto-sp13_S_contig10458:5417..54291681462532.0184581-CDS-Ecto-sp13_S_contig10458:5417..5429Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10458 5418..5429 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10458.435.1prot_Ecto-sp13_S_contig10458.435.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10458 4781..5429 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10458.435.1

>prot_Ecto-sp13_S_contig10458.435.1 ID=prot_Ecto-sp13_S_contig10458.435.1|Name=mRNA_Ecto-sp13_S_contig10458.435.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=69bp
MEEKVNRISQRADGTLAALNETASQIRDATACPPAATAGAAAGNDHNTTP
CEDVCDAFGSGSGGRSSS*
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mRNA from alignment at Ecto-sp13_S_contig10458:3252..5598-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10458.435.1 ID=mRNA_Ecto-sp13_S_contig10458.435.1|Name=mRNA_Ecto-sp13_S_contig10458.435.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2347bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10458:3252..5598- (Ectocarpus species13 EcNAP12_S_4_19m)
GGAATGGGGGCGCAGCAGCCTAGCCCTCCTCGACGTGCGAGAAGAAACCC
GGCGCCTATCGGCCGATCTCCTCCAGCTAGACCAAGCCATTGGCGCGAGC
CGTGGCGGCAGGAGAAATGCCCATGGAGGCGCAGAAGCTATTGACGATCT
GGGGAACATTCTCCGAGAGATGGAGGAAAAGGTGAGGTGACTCATCCAAG
GTTTTCACTTCTTTTTTGTGGGGGGTGACTGATTTTGTTTTAAAGGAAAA
GTTGGGGTGACTGATTCGACGTTTTCAATTCTTTGCTGCGCGAGGTTGTC
TTTAACTGGAGGAAAAGGTCAGGTGACTGATTCGAGGTTTTCACTTGCTA
GAAGATCAGTCTCGCCTTCCTTTGCTGCAAGCTCTCCCTCCCCTGCTACC
ACAAGCAGGAATCACACAACCTCTCGCCGCTTGTCCCTGTTTATTTAAAA
TGCATGGCGCTTGAATCCCCGCTGATTTGCTACAAGCCTTCCCTGTCCCT
CTACCAGCATGCGTCGCACACCTCGCCGTTGGTCCCTCTCTTTTTGAAAT
ACATCGCACTTGAACCCTCTCCTCCCTCCCCCTCCCCCCTTGCCATCCTT
TTTTTTTCGACGCGGTGGAACAGGTGAACAGAATATCGCAGCGGGCGGAC
GGCACGCTGGCGGCCCTCAACGAAACCGCCTCCCAGATACGGGACGCCAC
GGCGTGCCCGCCGGCAGCGACGGCAGGAGCCGCGGCAGGGAACGATCACA
ACACTACTCCCTGCGAGGATGTGTGTGATGCTTTTGGTTCTGGTTCTGGT
GGAAGATCTTCCTCTTGAAGTGCTGTGCTTCTGGTTTTGGAAGATGTTTT
TTTCTGCAAGTTGCAGCGGCATCGCGAAATTGAACAACACATTTCTTTTT
TTTGTTTACTCCGTCCTATCACAGGCTGCAACAGCGGCAGTGCTGTCGTT
CATAGATTGGTTTTGGGTGTGACATGCCGTCGCCCTAGCTAATTGAGTCG
TCGCGCGCAGAGATCGCGTGAGTTGGTCCTTGTATTTTGTGTCTCCCTAC
CGTGTTGGCCCCTCTGCTGCATTTTCGACGGCTTTTCTTGTTTACCTGCA
AACGTTCTTTGGGTTGGTGCCTTTCAGCCCACCCGCTGTAAACGATTTGA
CCTTTCCCGTTTCTGCCACGAGTAGAAGCGTGGGCCCTACGTCGGCGATT
GTTTTCGTCCTTCTCAGCCGGCAAGACCAAAAGTGTTCCTGCCCCTGGGA
AGAGAAACGAGGAATTTTCGCTCGCTGTGGATCGGGTGTTGTTGTGTGGA
GACGGTTGCGTGCGTGGACCTTTCCCTTGGGACGGAGGGCACGAAAGAAA
GGGTGGCGAGTCCACAGCTAGCGGCTATTCAGCTGGAGGATGGATGTTCA
ATAATAGCTGTGCTCCTCTGTGATGATTTGTGTGGGCGGAGATGGGTGCT
GTAGATTGGAGAGGTCTCCGAGAGGTGGCTAGATTACTTGTAGGGCGTGT
GGTTTTCTCGTGTCTTGAAAGAAAGTTTTTTTTGGGTGCTTATTCGTTGC
ACCGTGCGAGGAACTGTTGTTGTTGCTCGGAGAGGGACTGAACGGGGGCT
TGCTCGCGGAAGATCGTGATCATTTTGCCAAGGCCAGGCACGACGTCCCT
TTCAGATGGACATGGTCACGTTAACGTTGTTTGATGTTGTTTTTGGACAG
CCCCGTTGTCAAAGAGCCAGCCAGCCAGCCAGCCAGTCAGCTAGCCAGCG
ACTTCGGATCCTGGACTGAAAGATCGACCATTCGTGTGTAGGAACAACCG
CGACGTGCTGAATAGGTCGGGGGCTCGTACGAGTACGTCTTCATGGACGT
GTGGCGACGACCTTCAATTCAAACGCACCCGTGAACCGCACGTGGTAATC
TGTACACACACGACTCCCTTTACGCACGTTCTTGCACTGCTGTACGGAGA
TTGGTCCAAGGTGTTGGGAAGCTGCGTGTTGTGGGATAGTCTGATGAACG
CACTCAGCTCGCTTTGTTGCCTACTGCGAAGTATGTTCTTGTTGTGCGTT
CTCGTCGAAGAAGTAAGACTTGGCGTCTAGTTGCTTCGTTGTTGTATGCT
CTTGTGTTTTATTAAGAAAATATAGGCAATGTTGTAGCTTGACTGACGAC
TACACCCGTTCGACGGGATGCTGCGTTGAAATCTTGACGGTGATCTTCTC
GCTGGTCCCGTGGTCGGTCGTGATTCGTTGGTTGGTCGACTCACACGATG
AGAAGTTTCGTACGGAGAGGTAAATCGTCGGGTCCGTGCGTGCGCGTTGT
CGTTGGATGTGCGACACGTGACTTGGTTCGATTTTTTCAATCAAAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10458:3252..5598-

>mRNA_Ecto-sp13_S_contig10458.435.1 ID=mRNA_Ecto-sp13_S_contig10458.435.1|Name=mRNA_Ecto-sp13_S_contig10458.435.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=207bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10458:3252..5598- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGGAAAAGGTGAACAGAATATCGCAGCGGGCGGACGGCACGCTGGC
GGCCCTCAACGAAACCGCCTCCCAGATACGGGACGCCACGGCGTGCCCGC
CGGCAGCGACGGCAGGAGCCGCGGCAGGGAACGATCACAACACTACTCCC
TGCGAGGATGTGTGTGATGCTTTTGGTTCTGGTTCTGGTGGAAGATCTTC
CTCTTGA
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