mRNA_Ecto-sp13_S_contig10458.434.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10458.434.1
Unique NamemRNA_Ecto-sp13_S_contig10458.434.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10458.434.1 vs. uniprot
Match: D8LMW3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMW3_ECTSI)

HSP 1 Score: 276 bits (706), Expect = 1.140e-90
Identity = 197/204 (96.57%), Postives = 200/204 (98.04%), Query Frame = 1 
Query:    1 MAAFQREHAYVAQALDPCQIPEHKLAENQLPTKENRDLYGAATSGNLSELKVALAAGAHSNWYNKSEDGATALHRAASGGHVGCVEQLLKNGSVIDERLLTNSNSAXXXXXXXXXXXXXXVLLAASAAVNAGNSYGNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLLHFLAYSTAMPPADKKALTLKLVQAGVNLDSK 612
            MAAFQREHAYVAQALDP QIPEHKLAENQLPTK+NRDLYGAATSGNLSELKVALAAGA+SNWYNKSEDGATALHRAASGGHVGCVEQLLKNGSVIDERLLTNSNSAXXXXXXXXXXXXXX  LA+SAAVNAGNSYGNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLLHFLAYSTAMPPADKKAL LKLVQAGVNLDSK
Sbjct:    1 MAAFQREHAYVAQALDPSQIPEHKLAENQLPTKKNRDLYGAATSGNLSELKVALAAGANSNWYNKSEDGATALHRAASGGHVGCVEQLLKNGSVIDERLLTNSNSAXXXXXXXXXXXXXXXXLASSAAVNAGNSYGNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLLHFLAYSTAMPPADKKALALKLVQAGVNLDSK 204
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BLAST of mRNA_Ecto-sp13_S_contig10458.434.1 vs. uniprot
Match: A0A835ZFX4_9STRA (Ankyrin repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFX4_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 7.090e-22
Identity = 65/118 (55.08%), Postives = 82/118 (69.49%), Query Frame = 1 
Query:   58 IPEHKLAENQLPTKENRDLYGAATSGNLSELKVALAAGAHSNWYNKSEDGATALHRAASGGHVGCVEQLLKNGSVIDERLLTNSNSAXXXXXXXXXXXXXXVLLAASAAVNAGNSYGN 411
            +P HKLA NQLPT  N  LY AA +GNL  ++  L  GA  NW+   E+GATA+H+AA GGH   ++ L++ G V+D+ LLTN N+ XXXXXXXXXXXXXX   AA A V A N++GN
Sbjct:   19 LPPHKLAANQLPTPANVTLYEAAKAGNLRRVRRCLDNGASPNWFQNPEEGATAMHKAAEGGHTDILQLLIERGGVLDDALLTNRNTPXXXXXXXXXXXXXXXXXAAGAPVGAANAFGN 136
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BLAST of mRNA_Ecto-sp13_S_contig10458.434.1 vs. uniprot
Match: A0A0M0JJV3_9EUKA (RING-type E3 ubiquitin transferase n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JJV3_9EUKA)

HSP 1 Score: 54.3 bits (129), Expect = 3.930e-5
Identity = 28/54 (51.85%), Postives = 34/54 (62.96%), Query Frame = 1 
Query:  106 RDLYGAATSGNLSELKVALAAGAHSNWYNKSEDGATALHRAASGGHVGCVEQLL 267
            RDL+ AA +GN  ELK  +  G    W N ++ G TALH AA GGH+ CVE LL
Sbjct:  371 RDLFEAAKAGNNDELKRLIDLGGDVLWKNPNDSGMTALHYAAFGGHLACVETLL 424
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10458.434.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LMW3_ECTSI1.140e-9096.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZFX4_9STRA7.090e-2255.08Ankyrin repeat-containing domain protein n=1 Tax=T... [more]
A0A0M0JJV3_9EUKA3.930e-551.85RING-type E3 ubiquitin transferase n=1 Tax=Chrysoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10458contigEcto-sp13_S_contig10458:46..2269 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score277.7
Seed ortholog evalue4.3e-72
Seed eggNOG ortholog2880.D8LMW3
Model size612
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-02_003870.1
Cds size612
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462531.9003654-CDS-Ecto-sp13_S_contig10458:45..2071681462531.9003654-CDS-Ecto-sp13_S_contig10458:45..207Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10458 46..207 -
1681462531.9118688-CDS-Ecto-sp13_S_contig10458:522..6971681462531.9118688-CDS-Ecto-sp13_S_contig10458:522..697Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10458 523..697 -
1681462531.921909-CDS-Ecto-sp13_S_contig10458:917..10071681462531.921909-CDS-Ecto-sp13_S_contig10458:917..1007Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10458 918..1007 -
1681462531.9320593-CDS-Ecto-sp13_S_contig10458:1679..17331681462531.9320593-CDS-Ecto-sp13_S_contig10458:1679..1733Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10458 1680..1733 -
1681462531.9419572-CDS-Ecto-sp13_S_contig10458:2138..22691681462531.9419572-CDS-Ecto-sp13_S_contig10458:2138..2269Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10458 2139..2269 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10458.434.1prot_Ecto-sp13_S_contig10458.434.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10458 46..2269 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10458.434.1

>prot_Ecto-sp13_S_contig10458.434.1 ID=prot_Ecto-sp13_S_contig10458.434.1|Name=mRNA_Ecto-sp13_S_contig10458.434.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=204bp
MAAFQREHAYVAQALDPCQIPEHKLAENQLPTKENRDLYGAATSGNLSEL
KVALAAGAHSNWYNKSEDGATALHRAASGGHVGCVEQLLKNGSVIDERLL
TNSNSALHLACGNGHVETVKVLLAASAAVNAGNSYGNAPIHAALMGGHRA
VVELLLESGAEAQWTNNKGSSLLHFLAYSTAMPPADKKALTLKLVQAGVN
LDSK
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mRNA from alignment at Ecto-sp13_S_contig10458:46..2269-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10458.434.1 ID=mRNA_Ecto-sp13_S_contig10458.434.1|Name=mRNA_Ecto-sp13_S_contig10458.434.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2224bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10458:46..2269- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCTGCGTTCCAGCGCGAGCACGCTTACGTCGCACAGGCTTTGGATCC
CTGCCAAATCCCGGAGCATAAGCTGGCCGAAAACCAGCTTCCGACGAAGG
AGAACCGAGATCTGTACGGCGCTGCCACATCGTGAGAACGCAGTCAACAG
TCAACTCATAGTTTTCTTTCAAACAGCTCTGGTGTTGATGAGCTGTACAG
CCATTGAGCGTGAACTACACCCATTGAGCGTGAAATAAGTGCCGTTTAGC
TGCAGCATTGCCAGCCTACAGAAACGAAGATACAATGCAGGCCATGAAGC
TGGGATCCGTATGAGAGGGGAAACCCCTCCTGCTCTTGTGCTCTACATGT
CACGGCGCAACCCCACGCAAGTTTTCTCCACAACAGAGGTGTTTTGAGTC
GCATAAGTAGCTGATCACCAAGCAAGGCAGTATATCTCGTTGTTTGGATG
CGTTGCCTACAGTACGCGCCATCAAGTGGTGGCGCCTTCTTTATGTCCCC
ATCTACTGCTGTCCATCCCCCATGGCGTATGCGTAGGGGAAATCTTAGCG
AGCTGAAGGTGGCGCTGGCTGCTGGAGCTCATTCCAACTGGTGAGTTTTG
CCAGGGATTTCTCTACAGCTACACGTACACGCGGTATGTATGATCCCATT
GAAACTTCGATCAAGGTCGGTGGATGTTGAACTCAAGACACGTAGCCGTC
TGATGTTCAAAACGTTGTAGCCTGTCTTGAGTTGTAGAGGTATCATCAGG
TTTTGATGAGCCAAAACATATGTTGTTGTGTAAAATGAAGGAAGTTTCAA
CAACGGCTTGTTGCTGTGGGTAGTGGGAACACCTTTGGTTGCACTTCATG
TCCCAAAGTATCGAGGAACGTTTCGGATCGAGTCCAGCGTAGTTTATACT
GCATGGGTTGGACGGAGTACAGCTCGTCCAGAAAATCCCTTACGGAGTGC
TGTCATCGGATGTATATGGGGCAACGACATGATGAGCTTTTGGTTTCGAC
CCGAGTCTTGTTGGTTACCCTGCAGAAACACACCGCGTGAACTGTGTGCG
CGCGCGAGTCGGCGAGATGTACCTTATTTCGAACGTGCGGCACGAAAGAC
TCTCTGCCCAACAAAAGTATCTCCCTTGCTCTTTCGGGTCATCTACCTGT
CCCCCTATGCATACACTAACAACACATTGTTTTCCAGTATAGTCTATTGG
CGTAGTAGTGCGAGTGTCACGTACCACTACCCTTGCTATCGTTAACGCTG
CCGTCCGCGAAGGTACAACAAGTCAGAAGACGGGGCCACGGCACTCCACA
GGGCAGCGAGCGGTGGGCACGTGGGATGCGTAGAGCAGCTGCTGAAAAAC
GGGTGAGGATTCTAACACGACGTACACACGGTTTGTTGGATGCTTCAGAG
TACGCTCCGGAGTATCTACACACACACGCTTGTCGTAAAATTGAAATATG
CAAGCTGTTCTTGCCCACTTCACCGCCGTGTAGACATTGGTGCTAGACAA
AGGGATCACTGTAGACGACATCATGTGCACTCCATCCCCCCACCCGCGCT
CCTTTCGACACACGAACATCAGATCAGTCATCGACGAACGTCTCCTGACA
AACAGCAACTCGGCTCTGCATCTTGCCTGCGGGAATGGGCACGTGGAGAC
GGTCAAGGTTCTCCTCGCTGCGTCCGCAGCCGTCAACGCGGGTAACAGCT
ACGGGAACGCCCCCATTCACGCGGCACTGATGGGCGGACACCGTGCGGTG
AGAGCGATCAGAACTTTCCTACTTTTGAAAAATATCACTGCCGCCCGCGT
TGTACGGTTCTGGACGTCTTGTCTGGTCTCTTTTTATGAGGCGCGGCTTG
CGATATGGATCCTCTGATCGCCGTCATATTCGCGCGAACCGCCGCTTATT
ACTTTGTGGCTGCTGCTGTCCCAGCCGGGGTGCCACCTCAGGGTTACGTT
GCATCCGATCCGAGGTCGTTATTTTGTTCTAAATTTACACAAGAAAATAG
AGCAAAATTGTCACAACACCTACACTACATACACCTACGATGATGGTGAC
ACGTGCACAAAGGTCGTCGAGCTGCTGCTAGAGAGTGGCGCGGAGGCGCA
GTGGACGAACAACAAGGGCTCATCGTTGCTGCACTTTCTGGCTTACTCTA
CCGCCATGCCCCCTGCAGACAAGAAGGCGCTGACGCTGAAGCTAGTCCAG
GCCGGCGTAAACCTCGATTCTAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10458:46..2269-

>mRNA_Ecto-sp13_S_contig10458.434.1 ID=mRNA_Ecto-sp13_S_contig10458.434.1|Name=mRNA_Ecto-sp13_S_contig10458.434.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=612bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10458:46..2269- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCTGCGTTCCAGCGCGAGCACGCTTACGTCGCACAGGCTTTGGATCC
CTGCCAAATCCCGGAGCATAAGCTGGCCGAAAACCAGCTTCCGACGAAGG
AGAACCGAGATCTGTACGGCGCTGCCACATCGGGAAATCTTAGCGAGCTG
AAGGTGGCGCTGGCTGCTGGAGCTCATTCCAACTGGTACAACAAGTCAGA
AGACGGGGCCACGGCACTCCACAGGGCAGCGAGCGGTGGGCACGTGGGAT
GCGTAGAGCAGCTGCTGAAAAACGGATCAGTCATCGACGAACGTCTCCTG
ACAAACAGCAACTCGGCTCTGCATCTTGCCTGCGGGAATGGGCACGTGGA
GACGGTCAAGGTTCTCCTCGCTGCGTCCGCAGCCGTCAACGCGGGTAACA
GCTACGGGAACGCCCCCATTCACGCGGCACTGATGGGCGGACACCGTGCG
GTCGTCGAGCTGCTGCTAGAGAGTGGCGCGGAGGCGCAGTGGACGAACAA
CAAGGGCTCATCGTTGCTGCACTTTCTGGCTTACTCTACCGCCATGCCCC
CTGCAGACAAGAAGGCGCTGACGCTGAAGCTAGTCCAGGCCGGCGTAAAC
CTCGATTCTAAG
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