mRNA_Ecto-sp13_S_contig10457.432.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10457.432.1
Unique NamemRNA_Ecto-sp13_S_contig10457.432.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10457.432.1 vs. uniprot
Match: D7FKI6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKI6_ECTSI)

HSP 1 Score: 160 bits (405), Expect = 1.000e-49
Identity = 81/87 (93.10%), Postives = 83/87 (95.40%), Query Frame = 1 
Query:    1 MMPSMMNLLALLAAVLQMMGAAAEDFEVSTGVGSIRAQDRDPFKEGYFNMVTSCFALMFFFIACMFSVRICLGKKRGNDSHSFFLVA 261
            MMPSM+NLL LLAAVL MMGAAAEDFEVSTGVGSIRAQDRDPFKEGYFNM+ SCFALMFFFI CMFSVRICLGKKRGNDSHSFFLVA
Sbjct:    1 MMPSMINLLVLLAAVLHMMGAAAEDFEVSTGVGSIRAQDRDPFKEGYFNMIISCFALMFFFIGCMFSVRICLGKKRGNDSHSFFLVA 87
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10457.432.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FKI6_ECTSI1.000e-4993.10Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10457contigEcto-sp13_S_contig10457:3833..4096 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size264
Hectar predicted targeting categorysignal peptide
Exons1
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_001930.1
Cds size264
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462531.8707063-CDS-Ecto-sp13_S_contig10457:3832..40961681462531.8707063-CDS-Ecto-sp13_S_contig10457:3832..4096Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10457 3833..4096 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10457.432.1prot_Ecto-sp13_S_contig10457.432.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10457 3833..4096 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10457.432.1

>prot_Ecto-sp13_S_contig10457.432.1 ID=prot_Ecto-sp13_S_contig10457.432.1|Name=mRNA_Ecto-sp13_S_contig10457.432.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=88bp
MMPSMMNLLALLAAVLQMMGAAAEDFEVSTGVGSIRAQDRDPFKEGYFNM
VTSCFALMFFFIACMFSVRICLGKKRGNDSHSFFLVA*
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mRNA from alignment at Ecto-sp13_S_contig10457:3833..4096-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10457.432.1 ID=mRNA_Ecto-sp13_S_contig10457.432.1|Name=mRNA_Ecto-sp13_S_contig10457.432.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=264bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10457:3833..4096- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGCCGTCGATGATGAACCTCTTGGCGTTGTTGGCGGCGGTGCTTCA
AATGATGGGGGCGGCAGCAGAAGACTTCGAGGTTAGCACCGGCGTTGGCT
CGATCCGGGCGCAGGACCGCGACCCCTTCAAGGAGGGCTACTTCAACATG
GTCACCTCCTGCTTCGCCCTCATGTTCTTTTTCATCGCTTGCATGTTCAG
CGTCCGCATCTGCTTGGGCAAGAAGCGCGGGAACGACTCCCACTCGTTCT
TCTTGGTCGCTTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10457:3833..4096-

>mRNA_Ecto-sp13_S_contig10457.432.1 ID=mRNA_Ecto-sp13_S_contig10457.432.1|Name=mRNA_Ecto-sp13_S_contig10457.432.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=264bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10457:3833..4096- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGCCGTCGATGATGAACCTCTTGGCGTTGTTGGCGGCGGTGCTTCA
AATGATGGGGGCGGCAGCAGAAGACTTCGAGGTTAGCACCGGCGTTGGCT
CGATCCGGGCGCAGGACCGCGACCCCTTCAAGGAGGGCTACTTCAACATG
GTCACCTCCTGCTTCGCCCTCATGTTCTTTTTCATCGCTTGCATGTTCAG
CGTCCGCATCTGCTTGGGCAAGAAGCGCGGGAACGACTCCCACTCGTTCT
TCTTGGTCGCTTAA
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