mRNA_Ecto-sp13_S_contig10450.429.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10450.429.1
Unique NamemRNA_Ecto-sp13_S_contig10450.429.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10450.429.1 vs. uniprot
Match: Q8QNQ2_ESV1K (EsV-1-7 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNQ2_ESV1K)

HSP 1 Score: 87.0 bits (214), Expect = 3.150e-16
Identity = 46/67 (68.66%), Postives = 51/67 (76.12%), Query Frame = 2 
Query:  542 AKMTPSQHRRTPWRQLRAPHPRRLLLPLLPLL----RGRGLLTVTPWPMATIYGWALLRPRKLLDRR 730
            ++ TPSQHRRTPWRQL  PH RR LLPLLPLL    RGR ++TVTPWPM TIY  ALLR R+LL  R
Sbjct:  304 SRTTPSQHRRTPWRQLLVPHSRRRLLPLLPLLLPLLRGRAVMTVTPWPMVTIYCLALLRLRRLLVLR 370
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10450.429.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Q8QNQ2_ESV1K3.150e-1668.66EsV-1-7 n=1 Tax=Ectocarpus siliculosus virus 1 (is... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10450contigEcto-sp13_S_contig10450:789..1523 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size736
Hectar predicted targeting categoryother localisation
Exons1
Cds size735
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462531.6065834-CDS-Ecto-sp13_S_contig10450:788..15231681462531.6065834-CDS-Ecto-sp13_S_contig10450:788..1523Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10450 789..1523 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10450.429.1prot_Ecto-sp13_S_contig10450.429.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10450 789..1523 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10450.429.1

>prot_Ecto-sp13_S_contig10450.429.1 ID=prot_Ecto-sp13_S_contig10450.429.1|Name=mRNA_Ecto-sp13_S_contig10450.429.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=245bp
MPRICVQSGCSTRSSFGVEGGPPAFCNEHRETGTVNVVSKRCARSDCYTL
PRFGVPGRTAKFCGMHKERGMVNVVSKSCARSDCDTLPNFGVPGGTAAFC
SQHKQKGMVNVRNMCCGRGGCFKIASFGAEGSRAAFCKKHKENGMVNVRY
RPSKSGKRKRVAREEDDCGSDRYSMSGGNDSEDDTVAAPANPVAAASGPT
PTPPPLAPPAPAPGAGVADSDPVADGYDLWLGAAPSSQAPGPPVP
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mRNA from alignment at Ecto-sp13_S_contig10450:789..1523-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10450.429.1 ID=mRNA_Ecto-sp13_S_contig10450.429.1|Name=mRNA_Ecto-sp13_S_contig10450.429.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=735bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10450:789..1523- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCTCGCATATGTGTTCAAAGTGGTTGCTCCACGCGATCGTCATTCGG
TGTAGAAGGCGGTCCGCCGGCGTTCTGCAACGAGCACCGGGAGACCGGCA
CGGTGAATGTCGTGTCCAAGCGTTGCGCCCGCAGCGACTGCTACACGCTG
CCGCGCTTTGGTGTACCAGGCCGCACGGCGAAGTTTTGTGGGATGCATAA
GGAGAGAGGGATGGTGAATGTCGTGTCCAAGAGTTGCGCCCGCAGCGACT
GCGACACGCTGCCAAACTTTGGTGTTCCGGGCGGCACGGCGGCGTTCTGT
TCTCAGCACAAACAAAAAGGCATGGTGAACGTCAGGAACATGTGTTGTGG
CCGCGGCGGCTGCTTCAAGATTGCGAGCTTTGGCGCAGAAGGCAGCCGGG
CTGCGTTCTGCAAAAAGCACAAGGAGAACGGCATGGTCAATGTCCGATAC
CGGCCGTCTAAGTCCGGTAAACGCAAGCGCGTAGCGCGCGAGGAGGACGA
CTGTGGGAGCGACAGATATTCCATGAGCGGAGGCAACGACAGCGAAGATG
ACACCGTCGCAGCACCGGCGAACCCCGTGGCGGCAGCTTCGGGCCCCACA
CCCACGCCGCCTCCTCTTGCCCCTCCTGCCCCTGCTCCGGGGGCGGGGGT
TGCTGACAGTGACCCCGTGGCCGATGGCTACGATTTATGGCTGGGCGCTG
CTCCGTCCTCGCAAGCTCCTGGACCGCCGGTTCCA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10450:789..1523-

>mRNA_Ecto-sp13_S_contig10450.429.1 ID=mRNA_Ecto-sp13_S_contig10450.429.1|Name=mRNA_Ecto-sp13_S_contig10450.429.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=735bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10450:789..1523- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCTCGCATATGTGTTCAAAGTGGTTGCTCCACGCGATCGTCATTCGG
TGTAGAAGGCGGTCCGCCGGCGTTCTGCAACGAGCACCGGGAGACCGGCA
CGGTGAATGTCGTGTCCAAGCGTTGCGCCCGCAGCGACTGCTACACGCTG
CCGCGCTTTGGTGTACCAGGCCGCACGGCGAAGTTTTGTGGGATGCATAA
GGAGAGAGGGATGGTGAATGTCGTGTCCAAGAGTTGCGCCCGCAGCGACT
GCGACACGCTGCCAAACTTTGGTGTTCCGGGCGGCACGGCGGCGTTCTGT
TCTCAGCACAAACAAAAAGGCATGGTGAACGTCAGGAACATGTGTTGTGG
CCGCGGCGGCTGCTTCAAGATTGCGAGCTTTGGCGCAGAAGGCAGCCGGG
CTGCGTTCTGCAAAAAGCACAAGGAGAACGGCATGGTCAATGTCCGATAC
CGGCCGTCTAAGTCCGGTAAACGCAAGCGCGTAGCGCGCGAGGAGGACGA
CTGTGGGAGCGACAGATATTCCATGAGCGGAGGCAACGACAGCGAAGATG
ACACCGTCGCAGCACCGGCGAACCCCGTGGCGGCAGCTTCGGGCCCCACA
CCCACGCCGCCTCCTCTTGCCCCTCCTGCCCCTGCTCCGGGGGCGGGGGT
TGCTGACAGTGACCCCGTGGCCGATGGCTACGATTTATGGCTGGGCGCTG
CTCCGTCCTCGCAAGCTCCTGGACCGCCGGTTCCA
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