mRNA_Ecto-sp13_S_contig10446.426.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10446.426.1
Unique NamemRNA_Ecto-sp13_S_contig10446.426.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10446.426.1 vs. uniprot
Match: A0A6H5JEX6_9PHAE (PseudoU_synth_1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEX6_9PHAE)

HSP 1 Score: 626 bits (1614), Expect = 1.250e-212
Identity = 441/509 (86.64%), Postives = 458/509 (89.98%), Query Frame = 2 
Query:  524 MTAPGNPGSKSSGRSAGTDDTTAAGSNEASLTQGGXXXXXXXXXXXXXXLGTGHTRAAASQSAVPPQGPRGLSWREKQRQKAAEXXXXXXXXXXXXXXXXXXKGARQQRDFDHSRWRKRTVAVQLMYEGGGYAGFCSQSEGNEETIEKHLFRALTTTKLVETITTGDNYSRCGRTDRGVSALGNVITVSMRSKFPKHVPDADLPTSPLGSLWVGPTAPPPNGAESVGENDGGYKKENQTMPEGSAAAEQEQPAAGVADKGSGLAKDKNSEGCPSDSRHPASGAFEPCTAAGGXXVERGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGEVTEIDYCGILNRVLPPGVRALAWAPVTEGFSARFSCSDRTYRYFFMARDMNIKAMNEAASKIVGSHDFRNLCKIDVANVSNFVRHVKHASVRPVPSPSSSNTSDQEGTARGEDEEEYYRVCVFEV 2050
            MTAPGNP SKSSGRSAGTDDTTAAGS++A      XXXXXXXXXXXXXX         ASQ+ VPPQGPRGLSWREKQRQKAAEXXXXXXXXXXXX      KGA QQRDFDH+RWRKRTVAVQLMYEGGGYAGFCSQSEGNE+TIEKHLFRALTTTKLVE+I TGDNYSRCGRTDRGVSALGNVITVSMRSKFPKHVPDADLPTSPLGSLWV P APP N A+SVGENDGG+K+E+QTMPEGSAAAEQEQPAAG AD+GSGLAK K+SEGCPSDSRHPASGA +PCTA GG  V RGE      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      AGGE+TEIDYCGILNRVLPPG+RALAWAPVTEGFSARFSCSDRTYRYFFMARDMNIKAMNEAASKIVGSHDFRNLCKIDVANVSNFVRH+KHASVRPV SPS SNTSD EGTARGE+EEEYYRVCVFEV
Sbjct:    1 MTAPGNPHSKSSGRSAGTDDTTAAGSDKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASQAPVPPQGPRGLSWREKQRQKAAEXXXXXXXXXXXXGRKSK-KGAGQQRDFDHARWRKRTVAVQLMYEGGGYAGFCSQSEGNEDTIEKHLFRALTTTKLVESIATGDNYSRCGRTDRGVSALGNVITVSMRSKFPKHVPDADLPTSPLGSLWVAPIAPPQNAAKSVGENDGGFKRESQTMPEGSAAAEQEQPAAGGADEGSGLAKGKSSEGCPSDSRHPASGASDPCTAPGGGEVGRGEVASGNPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------AGGEITEIDYCGILNRVLPPGIRALAWAPVTEGFSARFSCSDRTYRYFFMARDMNIKAMNEAASKIVGSHDFRNLCKIDVANVSNFVRHIKHASVRPVQSPSPSNTSDHEGTARGEEEEEYYRVCVFEV 502
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BLAST of mRNA_Ecto-sp13_S_contig10446.426.1 vs. uniprot
Match: D7FHT8_ECTSI (Pseudouridylate synthase 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHT8_ECTSI)

HSP 1 Score: 566 bits (1458), Expect = 2.220e-193
Identity = 396/459 (86.27%), Postives = 402/459 (87.58%), Query Frame = 2 
Query:  524 MTAPGNPGSKSSGRSAGTDDTTAAGSNEASLTQGGXXXXXXXXXXXXXXLGTGHTRAAASQSAVPPQGPRGLSWREKQRQKAAEXXXXXXXXXXXXXXXXXXK-GARQQRDFDHSRWRKRTVAVQLMYEGGGYAGFCSQSEGNEETIEKHLFRALTTTKLVETITTGDNYSRCGRTDRGVSALGNVITVSMRSKFPKHVPDADLPTSPLGSLWVGPTAPPPNGAESVGENDGGYKKENQTMPEGSAAAEQEQPAAGVADKGSGLAKDKNSEGCPSDSRHPASGAFEPCTAAGGXXVERGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGEVTEIDYCGILNRVLPPGVRALAWAPVTEGFSARFSCSDRTYRYFFMARDMNIKAMNEAASKIVGSHDFRNLCKI 1897
            MT PGNPGSKSSGRSAG D TTA GSNEAS TQG               LGTGHTRAAASQ+ VPPQGPRGLSWREKQRQKAAEXXXXXXXXXXXXXX    K GA QQRDFDHSRWRKRTVAVQLMYEGGGYAGFCSQSEGNEETIEKHLFRALTTTKLVETITTGDNYSRCGRTDRGVSALGNVITVSMRSKFPKHVPDADLPTSPLGSLWV PTAPPPNGAESVGE+DG  KKENQTMPEGSAAAEQEQPAAGVA++GSGLAK KNSEGCPSDSRH ASGA EP T AGG  V RGE       XXXXXXXXXXXXXXXXXXXXXXXXXXXXX         XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  AGGEVTEIDYCGILNRVLPPGVR LAWAPVTEGFSARFSCSDRTYRYFFMARDM++KAMNEAASKIVGSHDFRNLCKI
Sbjct:    1 MTPPGNPGSKSSGRSAGADATTAGGSNEASSTQG---------------LGTGHTRAAASQAPVPPQGPRGLSWREKQRQKAAEXXXXXXXXXXXXXXGRKSKKGAGQQRDFDHSRWRKRTVAVQLMYEGGGYAGFCSQSEGNEETIEKHLFRALTTTKLVETITTGDNYSRCGRTDRGVSALGNVITVSMRSKFPKHVPDADLPTSPLGSLWVAPTAPPPNGAESVGEHDGAPKKENQTMPEGSAAAEQEQPAAGVAEEGSGLAKGKNSEGCPSDSRHQASGAPEPWTEAGGGEVGRGEVASGNPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRGSEGERGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--AGGEVTEIDYCGILNRVLPPGVRTLAWAPVTEGFSARFSCSDRTYRYFFMARDMDVKAMNEAASKIVGSHDFRNLCKI 442
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BLAST of mRNA_Ecto-sp13_S_contig10446.426.1 vs. uniprot
Match: A0A7S3H897_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H897_9STRA)

HSP 1 Score: 150 bits (378), Expect = 2.320e-34
Identity = 117/368 (31.79%), Postives = 158/368 (42.93%), Query Frame = 2 
Query:  854 FDHSRWRKRTVAVQLMYEGGGYAGFCSQSEGNEETIEKHLFRALTTTKLVETITTGDNYSRCGRTDRGVSALGNVITVSMRSKFPKHVPDADLPT--SPLGSLWVGPTAPPPNGAESVGENDGGYKKENQTMPEGSAAAEQEQPAAGVADKGSGLAKDKNSEGCPSDSRHPASGAFEPCTAAGGXXVERGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGEVTEIDYCGILNRVLPPGVRALAWAPVTEGFSARFSCSDRTYRYFFMARDMNIKAMNEAASKIVGSHDFRNLCKIDVANVSNFVRHVKHASVR 1951
            F  S++R R +A+Q+ Y+G  Y GF SQ    EET+E HLF AL   KL+E   T   YSRCGRTD+GVSALG VI+V++RS  P+ +P+  L    +P G   +   A                   N T   G++ AEQ        + G    + K+ +   SD+  PA     P T                                                                                                +TE+DY  +LNR LP  +R L W  VTE FSARFS SDR YRYFF  + +NI AM +AA+ ++G+HDFRNLCK+D+ANV+NF R +  A ++
Sbjct:   78 FSLSKYRTRQIAMQVQYDGSAYLGFASQDL--EETVENHLFNALLKLKLIEDRKTCQ-YSRCGRTDKGVSALGQVISVNVRSALPRDLPEEALVVLRNPTGKYEITEPA-----------------AVNSTSSAGNSTAEQ------ADNSGKEPPRKKSKKNATSDT--PAG----PKTKI----------------------------------------------------------------------------------------------ITEMDYVTMLNRTLPDDIRILGWCEVTEEFSARFSASDRKYRYFFPRKTLNIAAMQQAATYLLGNHDFRNLCKMDIANVTNFRRDIYSAEIK 319
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BLAST of mRNA_Ecto-sp13_S_contig10446.426.1 vs. uniprot
Match: A0A7R9Y7Q5_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y7Q5_9STRA)

HSP 1 Score: 132 bits (331), Expect = 9.350e-29
Identity = 62/95 (65.26%), Postives = 73/95 (76.84%), Query Frame = 2 
Query: 1673 EVTEIDYCGILNRVLPPGVRALAWAPVTEGFSARFSCSDRTYRYFFMARDMNIKAMNEAASKIVGSHDFRNLCKIDVANVSNFVRHVKHASVRPV 1957
            E  EIDYCG+LNRVLP  +R LAWAPVTE FSARFS   R+YRYFF AR +++ AM+EAA  ++GSHDFRN CK+DV NV NF R V  A+VR V
Sbjct:  154 EKREIDYCGLLNRVLPEAIRVLAWAPVTEDFSARFSAESRSYRYFFSARGLDLSAMDEAARLLIGSHDFRNFCKMDVVNVRNFRRRVYRAAVRLV 248
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10446.426.1 vs. uniprot
Match: G5AXW0_HETGA (tRNA pseudouridine synthase n=1 Tax=Heterocephalus glaber TaxID=10181 RepID=G5AXW0_HETGA)

HSP 1 Score: 122 bits (306), Expect = 3.900e-27
Identity = 69/131 (52.67%), Postives = 84/131 (64.12%), Query Frame = 2 
Query: 1673 EVTEIDYCGILNRVLPPGVRALAWAPVTEGFSARFSCSDRTYRYFFMARDMNIKAMNEAASKIVGSHDFRNLCKIDVAN-VSNFVRHVKHASVRPVPSPSSSNTSDQEGTARGEDE-EEYYRVCVFEVHVQ 2059
            +  EI Y  ILNRVLPP +R LAWAPV   FSARFSC +RTYRYFF   D++I  MN AA K VG+HDFRNLCK+DVAN V NF R +  A V+ V            G + GE+  +E +++C FEV  Q
Sbjct:   39 DAKEIRYTHILNRVLPPDIRVLAWAPVESSFSARFSCLERTYRYFFPCADLDIVRMNYAAQKYVGTHDFRNLCKMDVANGVINFQRTILSAQVQLV------------GQSLGEERWQEPFQLCQFEVTGQ 157
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BLAST of mRNA_Ecto-sp13_S_contig10446.426.1 vs. uniprot
Match: A0A4D9D3M2_9STRA (PseudoU_synth_1 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D3M2_9STRA)

HSP 1 Score: 128 bits (322), Expect = 3.970e-27
Identity = 112/374 (29.95%), Postives = 148/374 (39.57%), Query Frame = 2 
Query:  830 KGARQQRDFDHSRWRKRTVAVQLMYEGGGYAGFCSQSEGNEETIEKHLFRALTTTKLVETITTGDNYSRCGRTDRGVSALGNVITVSMRSKFPKHVPDADLPTSPLGSLWVGPTAPPPNGAESVGENDGGYKKENQTMPEGSAAAEQEQPAAGVADKGSGLAKDKNSEGC-PSDSRHPASGAFEPCTAAGGXXVERGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGEVTEIDYCGILNRVLPPGVRALAWAPVTEGFSARFSCSDRTYRYFFMARDMNIKAMNEAASKIVGSHDFRNLCKIDVANVSNFVRHVKHASV 1948
            K  +Q R+FD SR+  R +A+Q  YEGG Y G  S     EE++E  L  A   TKL+    +    SRCGRTD+GV+AL  V+ + +RS      P    P +P  +    P A P   A  V              P+          A G AD  +G AK   + G    ++  PA    +P   A G  +                                                                                           E+DY  +LNRVLP  +R L WAPV +GFSARF CS RTYRYFF     ++  M+ AA ++VG HDFRN CK+DV  V +FVR V+ A+V
Sbjct:   12 KKQKQAREFDFSRFGTRHIAIQFCYEGGPYNGLTSNGPSEEESVEAQLLMACIKTKLIPDRASAC-VSRCGRTDKGVNALRQVVGLRVRSIL--STPSTS-PWAPACASSSSPCASPDQHAPRV-------------TPD----------ANGDADSYNGHAKTTVTGGFFKEEAEDPA---LDPAALAAGGNIWSASYDTRTEG--------------------------------------------------------------------------------ELDYTTLLNRVLPLDIRVLGWAPVPDGFSARFCCSYRTYRYFFDGDGYDLGRMSAAAGRLVGEHDFRNFCKMDVTTVQSFVRVVREATV 275
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BLAST of mRNA_Ecto-sp13_S_contig10446.426.1 vs. uniprot
Match: A0A7J7S2M2_MYOMY (Pseudouridine synthase 3 n=5 Tax=Laurasiatheria TaxID=314145 RepID=A0A7J7S2M2_MYOMY)

HSP 1 Score: 120 bits (301), Expect = 2.870e-26
Identity = 69/131 (52.67%), Postives = 83/131 (63.36%), Query Frame = 2 
Query: 1673 EVTEIDYCGILNRVLPPGVRALAWAPVTEGFSARFSCSDRTYRYFFMARDMNIKAMNEAASKIVGSHDFRNLCKIDVAN-VSNFVRHVKHASVRPVPSPSSSNTSDQEGTARGEDE-EEYYRVCVFEVHVQ 2059
            +  EI Y  ILNRVLPP +R LAWAPV   FSARFSC +RTYRYFF   D++I  MN AA K VG+HDFRNLCK+DVAN V NF R +  A V+ V            G +  ED  +E +++C FEV  Q
Sbjct:  153 DAKEIRYTHILNRVLPPDIRVLAWAPVEPSFSARFSCLERTYRYFFPRADLDIVTMNCAAQKYVGTHDFRNLCKMDVANGVINFQRTILSAQVQLV------------GQSLAEDRWQEPFQLCQFEVTGQ 271
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10446.426.1 vs. uniprot
Match: A0A7E6CV69_9CHIR (tRNA pseudouridine(38/39) synthase isoform X2 n=2 Tax=Phyllostomus discolor TaxID=89673 RepID=A0A7E6CV69_9CHIR)

HSP 1 Score: 122 bits (306), Expect = 3.290e-26
Identity = 70/128 (54.69%), Postives = 83/128 (64.84%), Query Frame = 2 
Query: 1682 EIDYCGILNRVLPPGVRALAWAPVTEGFSARFSCSDRTYRYFFMARDMNIKAMNEAASKIVGSHDFRNLCKIDVAN-VSNFVRHVKHASVRPVPSPSSSNTSDQEGTARGED-EEEYYRVCVFEVHVQ 2059
            EI Y  ILNRVLPP +R LAWAPV  GFSARFSC +RTYRYFF   D++I  MN AA K VG+HDFRNLCK+DVAN V NF R +  A V+ V            G +  ED  +E +++C FEV  Q
Sbjct:  156 EIRYTHILNRVLPPDIRVLAWAPVEPGFSARFSCLERTYRYFFPRADLDIVTMNCAAHKYVGTHDFRNLCKMDVANGVINFQRTILSAEVKLV------------GQSLAEDGRQEPFQLCQFEVTGQ 271
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BLAST of mRNA_Ecto-sp13_S_contig10446.426.1 vs. uniprot
Match: A0A1S3ARP7_ERIEU (tRNA pseudouridine(38/39) synthase n=1 Tax=Erinaceus europaeus TaxID=9365 RepID=A0A1S3ARP7_ERIEU)

HSP 1 Score: 123 bits (308), Expect = 4.940e-26
Identity = 69/128 (53.91%), Postives = 83/128 (64.84%), Query Frame = 2 
Query: 1682 EIDYCGILNRVLPPGVRALAWAPVTEGFSARFSCSDRTYRYFFMARDMNIKAMNEAASKIVGSHDFRNLCKIDVAN-VSNFVRHVKHASVRPVPSPSSSNTSDQEGTARGEDE-EEYYRVCVFEVHVQ 2059
            EI Y  ILNRVLPP +R LAWAPV   FSARFSC +RTYRYFF   D+++ AMN AA K VG+HDFRNLCK+DVAN V NF R +  A V+ V            G + GE+   E +++C FEV  Q
Sbjct:  155 EIRYTHILNRVLPPDIRVLAWAPVEPSFSARFSCLERTYRYFFPCADLDVLAMNHAAQKYVGTHDFRNLCKMDVANGVINFQRTILSAQVQLV------------GQSLGEERWHEPFQLCQFEVTGQ 270
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BLAST of mRNA_Ecto-sp13_S_contig10446.426.1 vs. uniprot
Match: UPI0003F0894B (tRNA pseudouridine(38/39) synthase-like n=1 Tax=Elephantulus edwardii TaxID=28737 RepID=UPI0003F0894B)

HSP 1 Score: 123 bits (308), Expect = 4.940e-26
Identity = 68/125 (54.40%), Postives = 83/125 (66.40%), Query Frame = 2 
Query: 1682 EIDYCGILNRVLPPGVRALAWAPVTEGFSARFSCSDRTYRYFFMARDMNIKAMNEAASKIVGSHDFRNLCKIDVAN-VSNFVRHVKHASVRPVPSPSSSNTSDQEGTARGEDE-EEYYRVCVFEV 2050
            EI Y  ILNRVLPP +R LAWAPV   FSARFSC +RTYRYFF   D+++  MN+AA K VG+HDFRNLCK+DVAN V NF R V  A V+PV            G + GE+  +  +++C FEV
Sbjct:  155 EIRYTHILNRVLPPDIRILAWAPVEPTFSARFSCLERTYRYFFPRADLDLITMNDAAQKFVGTHDFRNLCKMDVANGVVNFQRTVLSAQVQPV------------GQSLGEERWQASFQLCQFEV 267
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10446.426.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JEX6_9PHAE1.250e-21286.64PseudoU_synth_1 domain-containing protein n=1 Tax=... [more]
D7FHT8_ECTSI2.220e-19386.27Pseudouridylate synthase 3 n=1 Tax=Ectocarpus sili... [more]
A0A7S3H897_9STRA2.320e-3431.79Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7R9Y7Q5_9STRA9.350e-2965.26Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
G5AXW0_HETGA3.900e-2752.67tRNA pseudouridine synthase n=1 Tax=Heterocephalus... [more]
A0A4D9D3M2_9STRA3.970e-2729.95PseudoU_synth_1 domain-containing protein n=2 Tax=... [more]
A0A7J7S2M2_MYOMY2.870e-2652.67Pseudouridine synthase 3 n=5 Tax=Laurasiatheria Ta... [more]
A0A7E6CV69_9CHIR3.290e-2654.69tRNA pseudouridine(38/39) synthase isoform X2 n=2 ... [more]
A0A1S3ARP7_ERIEU4.940e-2653.91tRNA pseudouridine(38/39) synthase n=1 Tax=Erinace... [more]
UPI0003F0894B4.940e-2654.40tRNA pseudouridine(38/39) synthase-like n=1 Tax=El... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10446contigEcto-sp13_S_contig10446:2..5425 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score575.1
Seed ortholog evalue4.2e-161
Seed eggNOG ortholog2880.D7FHT8
Preferred namePUS3
Model size2260
KEGG koko:K01855
Hectar predicted targeting categoryother localisation
GOsGO:0001522,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016556,GO:0016853,GO:0016866,GO:0031119,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1990481
Exons6
EggNOG free text desc.mRNA pseudouridine synthesis
EggNOG OGsCOG0101@1,KOG2554@2759
Ec32 ortholog descriptionPseudouridine synthase I, TruA
Ec32 orthologEc-07_006750.1
EC5.4.99.45
Cds size1971
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10446.426.1prot_Ecto-sp13_S_contig10446.426.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10446 200..5334 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462531.305528-UTR-Ecto-sp13_S_contig10446:1..1991681462531.305528-UTR-Ecto-sp13_S_contig10446:1..199Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10446 2..199 -
1681462531.3803864-UTR-Ecto-sp13_S_contig10446:5334..54251681462531.3803864-UTR-Ecto-sp13_S_contig10446:5334..5425Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10446 5335..5425 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462531.3182912-CDS-Ecto-sp13_S_contig10446:199..3631681462531.3182912-CDS-Ecto-sp13_S_contig10446:199..363Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10446 200..363 -
1681462531.3273954-CDS-Ecto-sp13_S_contig10446:872..9701681462531.3273954-CDS-Ecto-sp13_S_contig10446:872..970Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10446 873..970 -
1681462531.3393276-CDS-Ecto-sp13_S_contig10446:1875..26001681462531.3393276-CDS-Ecto-sp13_S_contig10446:1875..2600Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10446 1876..2600 -
1681462531.3469005-CDS-Ecto-sp13_S_contig10446:3002..31401681462531.3469005-CDS-Ecto-sp13_S_contig10446:3002..3140Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10446 3003..3140 -
1681462531.3567493-CDS-Ecto-sp13_S_contig10446:3740..44831681462531.3567493-CDS-Ecto-sp13_S_contig10446:3740..4483Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10446 3741..4483 -
1681462531.3678205-CDS-Ecto-sp13_S_contig10446:5231..53341681462531.3678205-CDS-Ecto-sp13_S_contig10446:5231..5334Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10446 5232..5334 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10446.426.1

>prot_Ecto-sp13_S_contig10446.426.1 ID=prot_Ecto-sp13_S_contig10446.426.1|Name=mRNA_Ecto-sp13_S_contig10446.426.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=657bp
MGIDGGSLREVLDSATPDELRGVLLSLEGRVVHVGAVTGLLERLRPPATA
PVARSSSSSSSSSDAVVQQPAATLKTSSSDCAVSSPAPATKRARCGDAPD
GGGGGGPAAAAAANSVRSTAPPPPAAKDASVTGGGTASAPPDAEMTAPGN
PGSKSSGRSAGTDDTTAAGSNEASLTQGGTAAGGSREASSTQGLGTGHTR
AAASQSAVPPQGPRGLSWREKQRQKAAEKEAGGGGGGGNKKSRKSKKGAR
QQRDFDHSRWRKRTVAVQLMYEGGGYAGFCSQSEGNEETIEKHLFRALTT
TKLVETITTGDNYSRCGRTDRGVSALGNVITVSMRSKFPKHVPDADLPTS
PLGSLWVGPTAPPPNGAESVGENDGGYKKENQTMPEGSAAAEQEQPAAGV
ADKGSGLAKDKNSEGCPSDSRHPASGAFEPCTAAGGGGVERGEVASGNPP
GGGDGGGSSVVASAADAGAPEHGGGGGGGGGLRGSEDERGGGLGGGNGNG
NGKTKKKHKKKSLMGGGSGGGGPPAGGEVTEIDYCGILNRVLPPGVRALA
WAPVTEGFSARFSCSDRTYRYFFMARDMNIKAMNEAASKIVGSHDFRNLC
KIDVANVSNFVRHVKHASVRPVPSPSSSNTSDQEGTARGEDEEEYYRVCV
FEVHVQ*
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mRNA from alignment at Ecto-sp13_S_contig10446:2..5425-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10446.426.1 ID=mRNA_Ecto-sp13_S_contig10446.426.1|Name=mRNA_Ecto-sp13_S_contig10446.426.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5424bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10446:2..5425- (Ectocarpus species13 EcNAP12_S_4_19m)
CCCAAAGCCCACCCACCAACGCACACGAACCACGAACCACATGACATAGA
GCAGTACTGCTGTTCTACCCAAGCCCACGAGGCGGAAGATCATGGGGATA
GACGGCGGCAGCCTACGAGAAGTACTGGATAGCGCCACCCCAGATGAGCT
GCGAGGCGTGCTGTTGTCGCTCGAGGGTCGAGTGGTTCACGTTGGTAAAT
CACTCACGTACAAGTACAGTTCTTTCCGCATATCCTATCCCTGTGATTCT
GTGATTGCCCTTTGGTGTTGACATGTGTGATGTTGATGTTGGCCTCAATG
CAAATCCTCGTGCCTGTGCGTGACGGGGGCATGCTACCCCTGTCCCGTGT
TCCGTGTTACACGTTCCGTGTGTAGGGCATCTATACGTGGAGGCGCTGAC
GCGCTGACGGCTTTGCAGTGTGTATCCTTGTTCGAGATTGCGGCGCAATA
CATCATCACCTGGTCTCACCAAGTCTTCTGTGGTGTTGTGCTGCCCGGCG
TGACTCCACCGCTCTTACGAACACAGCAGTATCTCGAACGGGTAATCTTT
TCTGCGTACTTTTACACATGCTTTCTGGAAAAAAGAGAGGTCACGTGGTG
CGAGGCCGTCGTAACCTTAGCGTTAGTCCCTGTGTTTTTCCTTCCCTCTC
CGGTACAGCAAAAGTGCCCAAATATACACAGTAGTAGTGGCATGTAGGGG
CAATAGGAAATAGGAGAATACCTCACTATTCAGGGCAGTGCCACTATTCG
ATATAGTCTATCGGGTTCGTGGACACGTGTTGAAATTGTGACAAGAGATT
TTGATGCCACTAGGACTCTATCGGCGGTTCCACTATTCAAGTTGCCACTA
TATCGGGCCACCTACTACTGCTGTATTGGTTTTGCACCGTGCTGTCGTTT
ACCGAAACGACAAACCCGCACACCCACGCGGAACCAACACAGGTGCTGTA
ACTGGCCTACTGGAACGGTTGCGACCACCAGCAACGGCACCAGTTGCCAG
AAGCAGCAGCAGCAGCAGCAGCAGCAGCGACGCCGTTGTGCAACAACCAG
CAGCCACGTTGAAAACATCGTCCTCGGACTGCGCGGTCTCCTCTCCGGCC
CCGGCTACAAAGCGTGCGCGCTGTGGGGACGCTCCCGACGGTGGTGGTGG
TGGTGGTCCCGCCGCCGCTGCGGCCGCCAACAGCGTTAGAAGCACCGCAC
CACCACCTCCTGCTGCGAAGGACGCCTCGGTTACCGGGGGGGGCACCGCT
AGCGCTCCTCCTGATGCCGAGATGACAGCTCCAGGAAATCCCGGCAGCAA
GAGCAGCGGCCGAAGCGCGGGAACCGACGATACGACTGCAGCTGGGAGTA
ACGAGGCGTCGTTAACTCAGGGCGGCACCGCTGCAGGTGGGAGTAGGGAG
GCGTCGTCAACTCAGGGGTTGGGGACGGGCCACACACGGGCGGCGGCTTC
GCAATCAGCGGTGCCGCCGCAGGGCCCGCGGGGGCTGTCCTGGAGAGAGA
AGCAGCGGCAAAAGGCAGCGGAGAAGGAGGCCGGCGGTGGCGGCGGCGGC
GGCAACAAGAAGAGCAGGAAGAGCAAGAAGGGGGCGAGGCAGCAGCGGGA
CTTCGACCACTCGCGCTGGCGCAAGCGCACCGTCGCGGTGCAGCTCATGT
ACGAGGGGGGAGGTTACGCCGGTTTCTGCTCGCAGGTAAATACGGCGTGG
CCGCCTTCGCGAAATTGAGTTTTTATGTATGAGGAAATAGAACAGGGCGG
GGGAACGCAAACCCTACCGCCGATATCATGCTTTATCCAATATGTTTACT
TGAAAGAACCCTACGAAGGCTACTGATACGGCTTTGGATTGGGCATTTTC
TCATTAGGATGTAGTACGAATATTTGGACAGTACTGAGCGGAGACCGGGA
CGGTTGTTACTGTGAAGACAGCAACAATCCGGTATTGCTCGAGCGAAAAG
AACTGCAGGGTTTGTGCGGCGGATCCGTTCTTTCGAGTGCATGGGAGGTA
GGTATGGAGTGCTTTTGAGTACGAGAAAATGGCGAACGTCACCAACGAAC
GAGCTAATCCAACCCCAGAGTGCTAGGTCGAGCGTTGTACCAAGGTATCA
AACAATTTGTTGAACGAAGAAATATTTGTATGTGGGCCTGCTGCTGCTGT
CTGCGAAAGCCTCCTGTTACTGGTACATGATGATGCTCCACCCATCCCCC
GTCGATGCCGTTCACCTCACCCCGGGCCCTTCCCTACCGTTCGGCTGCTA
CCGTTCCGTGCCTGGAACAAAACAAAAAAACACAGAGCGAAGGCAACGAG
GAGACAATCGAGAAACACCTCTTCCGAGCCCTGACGACAACCAAGCTCGT
AGAGACCATCACCACGGGGGACAACTACTCCCGCTGTGGCCGCACGGACA
GGGGGGTCAGCGCGCTTGGAAACGTGAGCGGGCTGTCTCCGGATTGGTTC
AGTATTTTGATATTGGTGTTGTCCCTCTTGTGTTGTTTACGTTGGTCTTG
TGGTTGGGTCCGGCGTTGGCGCTGATGTTGTCAGGGAAGATGTTGGTGTA
AGGTTATGCTACCTTGGTGGGGAGCTATTGCCGTTCGTGTCTTTTTGTTT
TCTTCTTTTGCTGTTTCATCCGCGACGGCTGTCACGTTCCGTTGGTCCCA
CAGCCTTGACCTCCTCTCCTCATTTTCCGTTTGACTGTCTTGCCTGCCGA
TGTCGTCCGCTTGCCTTCTTGGTTTCTTGCTGGCTGCGTGCCCCTTAACG
GCTTGCGGTCGATCGGAAACAACCTTGACAACAACAACAACAACAACAAC
AACAACAACAACAACGGCATGATAGGTCATCACGGTCTCAATGCGGTCAA
AGTTCCCCAAGCACGTGCCCGACGCCGACCTCCCTACGTCACCCCTCGGG
TCCCTCTGGGTAGGCCCGACCGCACCACCACCAAACGGGGCGGAATCAGT
TGGAGAAAACGACGGCGGCTATAAAAAAGAGAACCAAACGATGCCCGAAG
GCAGCGCTGCTGCGGAGCAGGAACAGCCAGCCGCCGGGGTCGCAGACAAG
GGCAGCGGCCTAGCCAAGGATAAAAATTCGGAGGGTTGCCCTTCTGATTC
GCGTCATCCAGCTAGCGGTGCTTTCGAACCTTGTACGGCGGCTGGAGGAG
GAGGGGTCGAACGCGGAGAAGTGGCGAGTGGAAACCCTCCTGGTGGCGGA
GACGGCGGCGGTAGCAGCGTCGTTGCGAGTGCAGCCGACGCCGGAGCACC
GGAGCACGGCGGCGGCGGCGGCGGCGGCGGCGGGCTACGCGGAAGCGAGG
ACGAGCGGGGGGGAGGACTCGGCGGTGGCAACGGCAACGGCAACGGCAAG
ACGAAGAAGAAGCACAAGAAGAAGAGCCTCATGGGCGGGGGCAGCGGGGG
TGGGGGGCCTCCGGCCGGAGGAGAGGTTACCGAGATCGACTACTGCGGGA
TTCTCAACCGGGTGTTGCCGCCAGGGGTCCGCGCGCTGGCGTGGGCACCG
GTCACGGAGGGCTTCAGCGCTAGGTTCAGCTGTTCCGACAGGACGTATAG
GTGAGAGCTGTCGAGGGTGTGCCTCCTATCTACGATTTGTCTATCGTGAG
CTGTTTGAGTGCGGCAGCTTCGTCACAGGCCGGAAAGAGAAAGAAGGTTG
GCTTCAAGACCTTGAAGATTCGTCACGAACCATACCCGAGTGACAGACAT
GCAGGAGGCAAGAGGGGCCCCGCGCATCATGTCCATCATACCCGTATCAT
CCACGGAACCCCAGGAGGTCCGGTAGACAGTAGTACCCTGACGAGTATCC
CGAACATAAGCTTCCCGATTTGGAACTTAGATTGCCCTCACCATACTCGA
AGTGTGAGCCCGTTTTAGCGGAAGTCGGGGCTGGACGACCAGCCGTCAGC
ACTGAAAAGCGATCTTGTTTGTTTGTGGAGGGTTCTTGTTGACTTGTTGG
ATGGGAACGATGTTGCTCGCGCAAGGAGACTTGTTTTCGTCTGCGGGGGT
AGGGGTTAGGCCGTGAGCGCAGGGAACTGGCTTCTCCATCTGTGGGAGTG
ACATAGTGATGGCACTGGGTGGCAGGTCAGAGGAGCAGGTTTTAGCGTGA
AGACAACAGCATCAAAAACAAAAACAACAACAGCAACAGAGGGGCTGGCT
GCCCTCGTCGTTTTCACTAGGATCGAGCTTCTGTTAATATACGGTCTCGT
ACGAATCGCTTTTTTATTTTTATTCCGTTGATTTCTCCCTCTCCCCCTTG
GGTGATGACTTGTTCTTTCCCCCCGTGACTTTAAACCAGCGCTCAGAGCA
TTTTCTGCCGACTAGGTCCAATCCATGGTCGCTGGTTGTATCTTAGTTTG
CCCTCCTTTTTTGCATGCGTGTTCACGAAAAGTTACTTCTTCATGGCGTG
AACCTCTGATTGTACCTTTTCTCGGCCTCTTTTTTGCTGGCGTGTCCACG
GAAAGGTACTTCTTCATGGCGAGAGACATGAACATAAAGGCTATGAACGA
AGCGGCATCTAAGATCGTCGGCAGCCACGACTTCAGAAACCTCTGCAAGA
TTGGTACGGAGGGTCATATCTGTATTGTTTTGGTGGGCTACATGGCGGTG
TTGTATGATGAGATCGGCCCAAACGTTTGCAAGATTAGTGCATAGGTCTT
ATCCACCCCTAGCCAAGCGCTAGCATGCCGTTTGGCGCAGTGTGGAGCGG
CAGGGTACCGCAGCGGCAGAGTACTGTAGGTTTGTGCGTCGTGTTTTGTT
GGTCCATATTTGCTGACAAGCACCTACTGTGCCATGTTCGCGCGTGCACA
TGTCCGTCGTTTCTCGGACACGCTCTTTTTGTTGCTGTTGGTGATGGCGG
GGAGCGCACTTGTTTTTTTCGGGGGGGGGGATGTTGTTCCTGGGGAACGT
TCTTTGTCTGGTGAACCTCTGGAACGTTCTTTTTTCGTCTCTGGAACGCT
CTTTTTCGTCTCTGGAACGTTCTGTTTCATCTCAAGGAATGTTCTTTTTT
GACTGTCTCCGGGAACGTTATTTCCCTCTCTCCCTCTCTGTTTTGCCGCA
CCGCGCGCGAAGACGTGGCGAACGTGTCCAACTTCGTCCGGCACGTCAAG
CACGCCTCCGTCAGACCGGTACCGTCACCATCGTCGTCAAATACGTCGGA
CCAAGAGGGCACGGCGAGAGGGGAGGACGAGGAGGAGTACTACCGGGTGT
GCGTGTTCGAGGTACACGTGCAGTAAAGCAGCGGCAGGTTCTGCCTCACC
TCAGCTGCGAGCGAGCAAACAAGGCAAAGCGAAGCGACGTTTATGGTACT
GCTGTGCGGGCGTGCGTCCTCCCTCTCTTGAGTTGTCGTCGCCCCAGCGC
TCAATGGCGGTTAGAGGACACAAGAAGAGATGCACGCACTGCTGTTGGTG
CCATGCATGTGCTCGTGTCTTTTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10446:2..5425-

>mRNA_Ecto-sp13_S_contig10446.426.1 ID=mRNA_Ecto-sp13_S_contig10446.426.1|Name=mRNA_Ecto-sp13_S_contig10446.426.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1971bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10446:2..5425- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGGATAGACGGCGGCAGCCTACGAGAAGTACTGGATAGCGCCACCCC
AGATGAGCTGCGAGGCGTGCTGTTGTCGCTCGAGGGTCGAGTGGTTCACG
TTGGTGCTGTAACTGGCCTACTGGAACGGTTGCGACCACCAGCAACGGCA
CCAGTTGCCAGAAGCAGCAGCAGCAGCAGCAGCAGCAGCGACGCCGTTGT
GCAACAACCAGCAGCCACGTTGAAAACATCGTCCTCGGACTGCGCGGTCT
CCTCTCCGGCCCCGGCTACAAAGCGTGCGCGCTGTGGGGACGCTCCCGAC
GGTGGTGGTGGTGGTGGTCCCGCCGCCGCTGCGGCCGCCAACAGCGTTAG
AAGCACCGCACCACCACCTCCTGCTGCGAAGGACGCCTCGGTTACCGGGG
GGGGCACCGCTAGCGCTCCTCCTGATGCCGAGATGACAGCTCCAGGAAAT
CCCGGCAGCAAGAGCAGCGGCCGAAGCGCGGGAACCGACGATACGACTGC
AGCTGGGAGTAACGAGGCGTCGTTAACTCAGGGCGGCACCGCTGCAGGTG
GGAGTAGGGAGGCGTCGTCAACTCAGGGGTTGGGGACGGGCCACACACGG
GCGGCGGCTTCGCAATCAGCGGTGCCGCCGCAGGGCCCGCGGGGGCTGTC
CTGGAGAGAGAAGCAGCGGCAAAAGGCAGCGGAGAAGGAGGCCGGCGGTG
GCGGCGGCGGCGGCAACAAGAAGAGCAGGAAGAGCAAGAAGGGGGCGAGG
CAGCAGCGGGACTTCGACCACTCGCGCTGGCGCAAGCGCACCGTCGCGGT
GCAGCTCATGTACGAGGGGGGAGGTTACGCCGGTTTCTGCTCGCAGAGCG
AAGGCAACGAGGAGACAATCGAGAAACACCTCTTCCGAGCCCTGACGACA
ACCAAGCTCGTAGAGACCATCACCACGGGGGACAACTACTCCCGCTGTGG
CCGCACGGACAGGGGGGTCAGCGCGCTTGGAAACGTCATCACGGTCTCAA
TGCGGTCAAAGTTCCCCAAGCACGTGCCCGACGCCGACCTCCCTACGTCA
CCCCTCGGGTCCCTCTGGGTAGGCCCGACCGCACCACCACCAAACGGGGC
GGAATCAGTTGGAGAAAACGACGGCGGCTATAAAAAAGAGAACCAAACGA
TGCCCGAAGGCAGCGCTGCTGCGGAGCAGGAACAGCCAGCCGCCGGGGTC
GCAGACAAGGGCAGCGGCCTAGCCAAGGATAAAAATTCGGAGGGTTGCCC
TTCTGATTCGCGTCATCCAGCTAGCGGTGCTTTCGAACCTTGTACGGCGG
CTGGAGGAGGAGGGGTCGAACGCGGAGAAGTGGCGAGTGGAAACCCTCCT
GGTGGCGGAGACGGCGGCGGTAGCAGCGTCGTTGCGAGTGCAGCCGACGC
CGGAGCACCGGAGCACGGCGGCGGCGGCGGCGGCGGCGGCGGGCTACGCG
GAAGCGAGGACGAGCGGGGGGGAGGACTCGGCGGTGGCAACGGCAACGGC
AACGGCAAGACGAAGAAGAAGCACAAGAAGAAGAGCCTCATGGGCGGGGG
CAGCGGGGGTGGGGGGCCTCCGGCCGGAGGAGAGGTTACCGAGATCGACT
ACTGCGGGATTCTCAACCGGGTGTTGCCGCCAGGGGTCCGCGCGCTGGCG
TGGGCACCGGTCACGGAGGGCTTCAGCGCTAGGTTCAGCTGTTCCGACAG
GACGTATAGGTACTTCTTCATGGCGAGAGACATGAACATAAAGGCTATGA
ACGAAGCGGCATCTAAGATCGTCGGCAGCCACGACTTCAGAAACCTCTGC
AAGATTGACGTGGCGAACGTGTCCAACTTCGTCCGGCACGTCAAGCACGC
CTCCGTCAGACCGGTACCGTCACCATCGTCGTCAAATACGTCGGACCAAG
AGGGCACGGCGAGAGGGGAGGACGAGGAGGAGTACTACCGGGTGTGCGTG
TTCGAGGTACACGTGCAGTAA
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