mRNA_Ecto-sp13_S_contig10445.424.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10445.424.1
Unique NamemRNA_Ecto-sp13_S_contig10445.424.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10445.424.1 vs. uniprot
Match: D7FJQ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJQ2_ECTSI)

HSP 1 Score: 847 bits (2189), Expect = 1.460e-308
Identity = 434/477 (90.99%), Postives = 446/477 (93.50%), Query Frame = 1 
Query:   28 MKDVSDGIDNFKQLSGREKTSKTVEQELALAAAAARRLSIHVNAWTTADILQELERIWLQVVRAEATIDPQFQHVVTEWETACAALSQLSRRAQEDSIAGQVERHASATRIRDCQIRAGVGSKAEKAGWWKQRQMRFLREELRHIERKIAPLADPSRLVARYNLLLARCAEVGGWATAVSAYRSARARGVITKPMSNRRDADGSFSLEPLVYQHLLRAAKNATPPQPRAALHVLREMRLRGEEPVATHYNLVVSACARAAAVATSTSALMPLDRDVTEGHAVLCEDRLRQNIGGADGHKKEGNCGAIHLESDGSGGVVATENETPKPAKLGSDHEEDIVENMRLKGTTFGAKVDVEDVSDRCCSLPTAGDAMECRGAEAAGETWRLALDVIADMRKRGVTPTLVTFKTLAECCRCAAAASVLKIGGGEGLGKGSSPAEVYTTLKEAGIPTRFCYQAGLGNAVKGGRCFPGYVAEISR 1458
            MKD SDGIDNFKQLSGREKTSK VEQELALAAAAARRLS+HVNAWTTA++LQELERIWLQ VRAEATID QF+HVVTEWE ACAALS+LSR AQEDSIAGQ ERHASATRIRDCQIRAGVGSKAEKAGWWKQRQMRFLREELRHIERK+APLADPS L ARYNLLL RCAEVGGWATAVSAYRSARARGVITKP+SNRRDA GSFSLEPLVYQHLLRAAKNATPPQPRAAL VLREMRLRGEEP ATHYNLVVSACARAAAVA STSALMPLDRD TEGHAVLCEDRL Q IGGADGHKKEGNCGAIHLESD SGGVVATENETPKPAKL S HEE + ENMRLKGT FGAKVDVED+ DRCC LPTAGDA+ECRGAEAAGETWRLALDVIADMRKRGVTPTLVTFKTL ECCRCAAAASVL IGGGEGLGKGS+PAEVYT LKEAGIP RFCYQAGL NA+ GGRCFPGYVAEISR
Sbjct:    1 MKDASDGIDNFKQLSGREKTSKAVEQELALAAAAARRLSLHVNAWTTAELLQELERIWLQAVRAEATIDSQFRHVVTEWEAACAALSRLSRTAQEDSIAGQAERHASATRIRDCQIRAGVGSKAEKAGWWKQRQMRFLREELRHIERKVAPLADPSHLAARYNLLLVRCAEVGGWATAVSAYRSARARGVITKPLSNRRDAVGSFSLEPLVYQHLLRAAKNATPPQPRAALLVLREMRLRGEEPAATHYNLVVSACARAAAVAASTSALMPLDRDDTEGHAVLCEDRLYQGIGGADGHKKEGNCGAIHLESDSSGGVVATENETPKPAKLCSGHEEGVEENMRLKGTAFGAKVDVEDLPDRCCLLPTAGDAVECRGAEAAGETWRLALDVIADMRKRGVTPTLVTFKTLVECCRCAAAASVLNIGGGEGLGKGSTPAEVYTALKEAGIPARFCYQAGLRNALNGGRCFPGYVAEISR 477
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BLAST of mRNA_Ecto-sp13_S_contig10445.424.1 vs. uniprot
Match: A0A6H5L7G8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7G8_9PHAE)

HSP 1 Score: 831 bits (2147), Expect = 3.510e-302
Identity = 427/477 (89.52%), Postives = 448/477 (93.92%), Query Frame = 1 
Query:   28 MKDVSDGIDNFKQLSGREKTSKTVEQELALAAAAARRLSIHVNAWTTADILQELERIWLQVVRAEATIDPQFQHVVTEWETACAALSQLSRRAQEDSIAGQVERHASATRIRDCQIRAGVGSKAEKAGWWKQRQMRFLREELRHIERKIAPLADPSRLVARYNLLLARCAEVGGWATAVSAYRSARARGVITKPMSNRRDADGSFSLEPLVYQHLLRAAKNATPPQPRAALHVLREMRLRGEEPVATHYNLVVSACARAAAVATSTSALMPLDRDVTEGHAVLCEDRLRQNIGGADGHKKEGNCGAIHLESDGSGGVVATENETPKPAKLGSDHEEDIVENMRLKGTTFGAKVDVEDVSDRCCSLPTAGDAMECRGAEAAGETWRLALDVIADMRKRGVTPTLVTFKTLAECCRCAAAASVLKIGGGEGLGKGSSPAEVYTTLKEAGIPTRFCYQAGLGNAVKGGRCFPGYVAEISR 1458
            MKDVSDGIDNFKQL GREKTSKTVEQELALAAAAARRLS+HVNAWTTA++LQELERIWLQ VRAEATIDPQFQHVVTEWETACAALS+LSR AQEDS+ GQ ERHASATRIRDC+IRAGVGSKA+K GWWKQRQMRFLREELRHIERK+APLADPSRLVARYNLLLARCAEVGGWA AVSAY+SARARGVITKPM+NRRDA+ SFSL+PLVYQHLLRAAKNATPPQPRAALHVLREMRLRGEEPVATHYNLVVSACARAAAVA STSALMPLDRD TEGHAVL EDRL Q+IGGADGHKKEG CGAIHLESD SGGVVATENETPKPAKLGS H+  + +NMRLK T FGAKVDVEDV DRCC LPTAGDAM+CRGAEAAG++WRLALDVIADMR  GVTPTLVTFKTL ECCRCAAAASVL IGGGEGLGKGS+PAEVY+ LKEAGIPTRFCYQAGLGNAVKG RCFP YVAEISR
Sbjct:    1 MKDVSDGIDNFKQLPGREKTSKTVEQELALAAAAARRLSLHVNAWTTAELLQELERIWLQAVRAEATIDPQFQHVVTEWETACAALSRLSRTAQEDSVTGQAERHASATRIRDCRIRAGVGSKAKKTGWWKQRQMRFLREELRHIERKVAPLADPSRLVARYNLLLARCAEVGGWAIAVSAYQSARARGVITKPMNNRRDANPSFSLKPLVYQHLLRAAKNATPPQPRAALHVLREMRLRGEEPVATHYNLVVSACARAAAVAASTSALMPLDRDGTEGHAVLREDRLCQDIGGADGHKKEGFCGAIHLESDSSGGVVATENETPKPAKLGSGHK-CVAKNMRLKQTAFGAKVDVEDVPDRCCLLPTAGDAMQCRGAEAAGDSWRLALDVIADMRMSGVTPTLVTFKTLVECCRCAAAASVLNIGGGEGLGKGSTPAEVYSALKEAGIPTRFCYQAGLGNAVKGRRCFPAYVAEISR 476
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10445.424.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FJQ2_ECTSI1.460e-30890.99Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L7G8_9PHAE3.510e-30289.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10445contigEcto-sp13_S_contig10445:14..1682 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1461
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-06_010630.3
Cds size1434
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462531.1548214-UTR-Ecto-sp13_S_contig10445:13..401681462531.1548214-UTR-Ecto-sp13_S_contig10445:13..40Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10445 14..40 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462531.1692266-CDS-Ecto-sp13_S_contig10445:40..5221681462531.1692266-CDS-Ecto-sp13_S_contig10445:40..522Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10445 41..522 +
1681462531.1780455-CDS-Ecto-sp13_S_contig10445:730..16821681462531.1780455-CDS-Ecto-sp13_S_contig10445:730..1682Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10445 731..1682 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10445.424.1prot_Ecto-sp13_S_contig10445.424.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10445 41..1682 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10445.424.1

>prot_Ecto-sp13_S_contig10445.424.1 ID=prot_Ecto-sp13_S_contig10445.424.1|Name=mRNA_Ecto-sp13_S_contig10445.424.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=478bp
MKDVSDGIDNFKQLSGREKTSKTVEQELALAAAAARRLSIHVNAWTTADI
LQELERIWLQVVRAEATIDPQFQHVVTEWETACAALSQLSRRAQEDSIAG
QVERHASATRIRDCQIRAGVGSKAEKAGWWKQRQMRFLREELRHIERKIA
PLADPSRLVARYNLLLARCAEVGGWATAVSAYRSARARGVITKPMSNRRD
ADGSFSLEPLVYQHLLRAAKNATPPQPRAALHVLREMRLRGEEPVATHYN
LVVSACARAAAVATSTSALMPLDRDVTEGHAVLCEDRLRQNIGGADGHKK
EGNCGAIHLESDGSGGVVATENETPKPAKLGSDHEEDIVENMRLKGTTFG
AKVDVEDVSDRCCSLPTAGDAMECRGAEAAGETWRLALDVIADMRKRGVT
PTLVTFKTLAECCRCAAAASVLKIGGGEGLGKGSSPAEVYTTLKEAGIPT
RFCYQAGLGNAVKGGRCFPGYVAEISR*
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mRNA from alignment at Ecto-sp13_S_contig10445:14..1682+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10445.424.1 ID=mRNA_Ecto-sp13_S_contig10445.424.1|Name=mRNA_Ecto-sp13_S_contig10445.424.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1669bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10445:14..1682+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGTGGAGGTCTACCCTGAAGAGCCTCATGAAGGACGTCTCAGACGGCAT
CGACAACTTCAAGCAGCTTTCCGGCCGCGAAAAAACGAGCAAGACTGTCG
AGCAGGAGCTCGCATTAGCTGCTGCTGCGGCCCGGCGTCTATCCATTCAC
GTCAACGCCTGGACCACGGCAGACATCTTGCAGGAACTCGAGCGCATATG
GCTCCAGGTTGTTCGAGCGGAGGCGACAATAGACCCACAGTTTCAACACG
TTGTCACGGAATGGGAAACCGCCTGCGCCGCTCTCTCACAGTTGTCTCGA
AGAGCCCAAGAAGATTCGATCGCCGGACAGGTAGAGCGGCATGCCTCTGC
AACCAGAATCCGCGACTGCCAAATCCGAGCGGGCGTTGGATCAAAGGCTG
AGAAGGCCGGGTGGTGGAAGCAACGACAGATGCGTTTTCTACGGGAAGAG
CTCAGGCACATTGAGCGCAAGATTGCTCCATTGGCCGATCCGTCCCGCTT
AGTGGCAAGGTCAGTGTTTTGAGATCGATCAGGATGGGGACCGAAACATG
AAGAGGTGGGGGGTGGTACATGCATAAAGAAAAGACGAGTTGTAGCTTTC
CTGCCAAGAGTTGGTCGCGAGCATATTCCTGAAGCAATGGTAGCGTCTTG
TATCATAAGGTATGCGCCCCCCGAACACCTCCTACCGCGCCCCCTACCCG
TCACGCTTTCTTCCCAGATACAACCTCCTGCTAGCAAGATGCGCAGAGGT
GGGGGGATGGGCAACAGCCGTTTCTGCCTACCGATCAGCAAGAGCCCGAG
GCGTCATCACCAAACCCATGAGCAATAGGCGAGACGCGGATGGTTCGTTC
TCGCTGGAACCTTTGGTTTACCAACACCTTCTCCGCGCGGCCAAAAATGC
GACCCCTCCCCAACCTCGCGCGGCTCTGCACGTCCTGCGAGAAATGAGGC
TCAGAGGCGAAGAGCCTGTGGCCACGCACTACAACCTCGTTGTCAGCGCA
TGTGCTCGGGCTGCCGCCGTCGCGACATCCACCTCGGCCCTGATGCCGTT
AGATCGTGATGTCACTGAGGGCCATGCGGTCCTTTGCGAAGACCGATTAC
GTCAGAATATCGGGGGTGCTGACGGACACAAGAAGGAAGGAAATTGTGGC
GCTATTCACCTAGAAAGTGACGGCAGCGGTGGGGTCGTGGCCACAGAGAA
CGAAACGCCCAAGCCCGCAAAACTTGGCAGCGATCATGAAGAGGATATAG
TAGAAAATATGCGGTTGAAAGGGACCACCTTTGGCGCCAAAGTTGATGTC
GAAGACGTTTCAGACCGTTGTTGCTCACTGCCCACGGCAGGCGATGCCAT
GGAGTGTCGAGGGGCTGAAGCTGCCGGAGAGACCTGGCGGCTAGCCTTGG
ACGTGATCGCAGACATGCGCAAGAGGGGAGTCACGCCGACACTTGTGACT
TTCAAGACACTGGCAGAGTGTTGTCGCTGTGCTGCAGCAGCGTCTGTGCT
TAAAATAGGCGGGGGTGAGGGGTTGGGGAAGGGTTCTTCTCCAGCGGAGG
TGTATACTACGTTGAAAGAGGCTGGGATTCCGACACGGTTCTGCTATCAG
GCCGGGTTGGGGAACGCAGTGAAGGGAGGAAGATGCTTCCCAGGGTATGT
CGCTGAAATCAGTAGATGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10445:14..1682+

>mRNA_Ecto-sp13_S_contig10445.424.1 ID=mRNA_Ecto-sp13_S_contig10445.424.1|Name=mRNA_Ecto-sp13_S_contig10445.424.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1434bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10445:14..1682+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGGACGTCTCAGACGGCATCGACAACTTCAAGCAGCTTTCCGGCCG
CGAAAAAACGAGCAAGACTGTCGAGCAGGAGCTCGCATTAGCTGCTGCTG
CGGCCCGGCGTCTATCCATTCACGTCAACGCCTGGACCACGGCAGACATC
TTGCAGGAACTCGAGCGCATATGGCTCCAGGTTGTTCGAGCGGAGGCGAC
AATAGACCCACAGTTTCAACACGTTGTCACGGAATGGGAAACCGCCTGCG
CCGCTCTCTCACAGTTGTCTCGAAGAGCCCAAGAAGATTCGATCGCCGGA
CAGGTAGAGCGGCATGCCTCTGCAACCAGAATCCGCGACTGCCAAATCCG
AGCGGGCGTTGGATCAAAGGCTGAGAAGGCCGGGTGGTGGAAGCAACGAC
AGATGCGTTTTCTACGGGAAGAGCTCAGGCACATTGAGCGCAAGATTGCT
CCATTGGCCGATCCGTCCCGCTTAGTGGCAAGATACAACCTCCTGCTAGC
AAGATGCGCAGAGGTGGGGGGATGGGCAACAGCCGTTTCTGCCTACCGAT
CAGCAAGAGCCCGAGGCGTCATCACCAAACCCATGAGCAATAGGCGAGAC
GCGGATGGTTCGTTCTCGCTGGAACCTTTGGTTTACCAACACCTTCTCCG
CGCGGCCAAAAATGCGACCCCTCCCCAACCTCGCGCGGCTCTGCACGTCC
TGCGAGAAATGAGGCTCAGAGGCGAAGAGCCTGTGGCCACGCACTACAAC
CTCGTTGTCAGCGCATGTGCTCGGGCTGCCGCCGTCGCGACATCCACCTC
GGCCCTGATGCCGTTAGATCGTGATGTCACTGAGGGCCATGCGGTCCTTT
GCGAAGACCGATTACGTCAGAATATCGGGGGTGCTGACGGACACAAGAAG
GAAGGAAATTGTGGCGCTATTCACCTAGAAAGTGACGGCAGCGGTGGGGT
CGTGGCCACAGAGAACGAAACGCCCAAGCCCGCAAAACTTGGCAGCGATC
ATGAAGAGGATATAGTAGAAAATATGCGGTTGAAAGGGACCACCTTTGGC
GCCAAAGTTGATGTCGAAGACGTTTCAGACCGTTGTTGCTCACTGCCCAC
GGCAGGCGATGCCATGGAGTGTCGAGGGGCTGAAGCTGCCGGAGAGACCT
GGCGGCTAGCCTTGGACGTGATCGCAGACATGCGCAAGAGGGGAGTCACG
CCGACACTTGTGACTTTCAAGACACTGGCAGAGTGTTGTCGCTGTGCTGC
AGCAGCGTCTGTGCTTAAAATAGGCGGGGGTGAGGGGTTGGGGAAGGGTT
CTTCTCCAGCGGAGGTGTATACTACGTTGAAAGAGGCTGGGATTCCGACA
CGGTTCTGCTATCAGGCCGGGTTGGGGAACGCAGTGAAGGGAGGAAGATG
CTTCCCAGGGTATGTCGCTGAAATCAGTAGATGA
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