mRNA_Ecto-sp13_S_contig10436.415.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig10436.415.1
Unique Name	mRNA_Ecto-sp13_S_contig10436.415.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig10436.415.1 vs. uniprot
Match: D8LFQ2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFQ2_ECTSI)

HSP 1 Score: 307 bits (787), Expect = 1.640e-94
Identity = 145/146 (99.32%), Postives = 145/146 (99.32%), Query Frame = 1

Query:    1 TVHAVQGRTVEGKLVIHQARHRYSDVYWLYTAISRATGPSNAVVLDDVHRSVSDMPEHTRRSWATTKVSSYLRADVAAGRLDDGDGGHHKDALIEELLRSYRGRCNSCSLEVVWAVYSERQPTLDRLDYALPHTPGNVDVKCLRCN 438
            TVHAVQGRTVEGKLVIHQARHRYSDVYWLYTAISRATGPSNAVVLDDVHRSVSDMPEHTRRSWATTKVSSYLRADVAAGRLDDGDGGHHKDALIEELLRSYRG CNSCSLEVVWAVYSERQPTLDRLDYALPHTPGNVDVKCLRCN
Sbjct: 1268 TVHAVQGRTVEGKLVIHQARHRYSDVYWLYTAISRATGPSNAVVLDDVHRSVSDMPEHTRRSWATTKVSSYLRADVAAGRLDDGDGGHHKDALIEELLRSYRGTCNSCSLEVVWAVYSERQPTLDRLDYALPHTPGNVDVKCLRCN 1413

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BLAST of mRNA_Ecto-sp13_S_contig10436.415.1 vs. uniprot
Match: A0A6H5KZQ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZQ7_9PHAE)

HSP 1 Score: 273 bits (698), Expect = 2.860e-89
Identity = 145/222 (65.32%), Postives = 145/222 (65.32%), Query Frame = 1

Query:    1 TVHAVQGRTVEGKLVIHQARHRYSDVYWLYTAISRATGPSNAVVLDDVHRSVSDMPEHTRRSWATTKVSSYLRADVAAGRLDDGDGGHHKDALIEELLRSYRGRCNSCSLEVVWAVYSE----------------------------------------------------------------------------RQPTLDRLDYALPHTPGNVDVKCLRCN 438
            TVHAVQGRTVEGKLVIHQARHRYSDVYWLYTAISRATG SNAVVLDDVHRSVSDMPEHTRRSWATTKVSSYLRADVAAGRLDDGDGGHHKDALIEELLRSYRGRCNSCSLEVVWAVYSE                                                                            RQPTLDRLDYALPHTPGNVDVKCLRCN
Sbjct:  125 TVHAVQGRTVEGKLVIHQARHRYSDVYWLYTAISRATGSSNAVVLDDVHRSVSDMPEHTRRSWATTKVSSYLRADVAAGRLDDGDGGHHKDALIEELLRSYRGRCNSCSLEVVWAVYSELLDDVHRSVSDMPEHTRRSWATTKVSSYLRADVAAGRLDDGDGGHHKDALIEELLRSYRGRCNSCSLEVVWAVYSERQPTLDRLDYALPHTPGNVDVKCLRCN 346

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BLAST of mRNA_Ecto-sp13_S_contig10436.415.1 vs. uniprot
Match: A0A6H5KBM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBM1_9PHAE)

HSP 1 Score: 262 bits (669), Expect = 5.330e-79
Identity = 119/146 (81.51%), Postives = 131/146 (89.73%), Query Frame = 1

Query:    1 TVHAVQGRTVEGKLVIHQARHRYSDVYWLYTAISRATGPSNAVVLDDVHRSVSDMPEHTRRSWATTKVSSYLRADVAAGRLDDGDGGHHKDALIEELLRSYRGRCNSCSLEVVWAVYSERQPTLDRLDYALPHTPGNVDVKCLRCN 438
            TVHAVQGRTV+GKLVIHQARHR+SDVYWLYTAISRATGP N V+LDD+HRSVSDM EH RRSWAT KVSSYLRADV  GRLD+G+G  H +AL + LL SY GRCNSC++E+VWAVYSERQPTLDRLD ALPHTPGNVDVKCL+CN
Sbjct:  924 TVHAVQGRTVDGKLVIHQARHRFSDVYWLYTAISRATGPLNVVILDDIHRSVSDMSEHARRSWATRKVSSYLRADVTGGRLDEGEGNQHNNALAQALLNSYGGRCNSCTIELVWAVYSERQPTLDRLDCALPHTPGNVDVKCLKCN 1069

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BLAST of mRNA_Ecto-sp13_S_contig10436.415.1 vs. uniprot
Match: A0A6H5L0U3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0U3_9PHAE)

HSP 1 Score: 228 bits (582), Expect = 9.160e-72
Identity = 104/146 (71.23%), Postives = 123/146 (84.25%), Query Frame = 1

Query:    1 TVHAVQGRTVEGKLVIHQARHRYSDVYWLYTAISRATGPSNAVVLDDVHRSVSDMPEHTRRSWATTKVSSYLRADVAAGRLDDGDGGHHKDALIEELLRSYRGRCNSCSLEVVWAVYSERQPTLDRLDYALPHTPGNVDVKCLRCN 438
            TVHAVQGRTV+G+L+IHQARH Y+DVYW+YTAISRATGPSN  V+DD+HRS SDM +  R SW + KVSSY+ ADVAA RL   +GG H++AL++EL RSY GRCN C+ ++VWAVYSERQPTLDRLD ALPHT  NVDVKCL+CN
Sbjct:  212 TVHAVQGRTVQGRLLIHQARHPYADVYWIYTAISRATGPSNVRVIDDIHRSKSDMSDRERASWVSRKVSSYIYADVAAERLGSDEGGQHREALVQELHRSYGGRCNLCNHDLVWAVYSERQPTLDRLDCALPHTIDNVDVKCLKCN 357

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BLAST of mRNA_Ecto-sp13_S_contig10436.415.1 vs. uniprot
Match: A0A6H5L8I4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8I4_9PHAE)

HSP 1 Score: 240 bits (613), Expect = 4.470e-71
Identity = 114/146 (78.08%), Postives = 125/146 (85.62%), Query Frame = 1

Query:    1 TVHAVQGRTVEGKLVIHQARHRYSDVYWLYTAISRATGPSNAVVLDDVHRSVSDMPEHTRRSWATTKVSSYLRADVAAGRLDDGDGGHHKDALIEELLRSYRGRCNSCSLEVVWAVYSERQPTLDRLDYALPHTPGNVDVKCLRCN 438
            TVHAVQG TVEGKLV HQARHR+SDV WLYTAISRATGPSN +VLDDVHRSVSDM E   RSWA  KVSS  RADV AGR+D G+G  HKDALI+ L+ SY GRCNSCS+E+VWAV SERQPTLDRLD ALPHTPGNVDV+CL+C+
Sbjct:  941 TVHAVQGCTVEGKLVTHQARHRFSDVCWLYTAISRATGPSNVLVLDDVHRSVSDMTEQAGRSWANRKVSSCPRADVTAGRVDHGEGNQHKDALIQALVSSYGGRCNSCSVELVWAVNSERQPTLDRLDCALPHTPGNVDVRCLKCD 1086

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BLAST of mRNA_Ecto-sp13_S_contig10436.415.1 vs. uniprot
Match: A0A6H5KWL4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWL4_9PHAE)

HSP 1 Score: 230 bits (586), Expect = 2.090e-68
Identity = 104/146 (71.23%), Postives = 123/146 (84.25%), Query Frame = 1

Query:    1 TVHAVQGRTVEGKLVIHQARHRYSDVYWLYTAISRATGPSNAVVLDDVHRSVSDMPEHTRRSWATTKVSSYLRADVAAGRLDDGDGGHHKDALIEELLRSYRGRCNSCSLEVVWAVYSERQPTLDRLDYALPHTPGNVDVKCLRCN 438
            TVHAVQGRTVEG+L+IHQARH Y+DVYW+YTAISRATGPSN  V+DD++RS SDM +  R SW + KVSSY+ ADVAA RL   +GG H++AL++EL RSY GRCN C+ E++W VYSERQPTLDRLD ALPHT GNVDVKCL+CN
Sbjct:  657 TVHAVQGRTVEGRLIIHQARHPYADVYWIYTAISRATGPSNVRVIDDIYRSKSDMSDRERASWVSRKVSSYIYADVAAERLGSDEGGQHREALVQELHRSYGGRCNLCNHELIWTVYSERQPTLDRLDCALPHTIGNVDVKCLKCN 802

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BLAST of mRNA_Ecto-sp13_S_contig10436.415.1 vs. uniprot
Match: A0A6H5L2B8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2B8_9PHAE)

HSP 1 Score: 228 bits (581), Expect = 1.690e-66
Identity = 101/146 (69.18%), Postives = 123/146 (84.25%), Query Frame = 1

Query:    1 TVHAVQGRTVEGKLVIHQARHRYSDVYWLYTAISRATGPSNAVVLDDVHRSVSDMPEHTRRSWATTKVSSYLRADVAAGRLDDGDGGHHKDALIEELLRSYRGRCNSCSLEVVWAVYSERQPTLDRLDYALPHTPGNVDVKCLRCN 438
            TVHAVQGRTVEG+L+IHQARHR++DV+WLYT +SRATGPSN  V+DD+HRS S+M +  R SW T KVSSY+ ADVAAGR+   DGG H++AL++EL RSY GRCN C+ E++W + SERQPTLDRLD +LPHT GNVDVKCL+CN
Sbjct: 1320 TVHAVQGRTVEGRLIIHQARHRHADVHWLYTGVSRATGPSNVRVIDDIHRSESNMSDRERVSWVTRKVSSYIYADVAAGRIKSDDGGQHREALVQELHRSYGGRCNLCNRELIWTINSERQPTLDRLDCSLPHTIGNVDVKCLKCN 1465

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BLAST of mRNA_Ecto-sp13_S_contig10436.415.1 vs. uniprot
Match: D7FQN9_ECTSI (Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D7FQN9_ECTSI)

HSP 1 Score: 228 bits (580), Expect = 2.050e-66
Identity = 104/146 (71.23%), Postives = 123/146 (84.25%), Query Frame = 1

Query:    1 TVHAVQGRTVEGKLVIHQARHRYSDVYWLYTAISRATGPSNAVVLDDVHRSVSDMPEHTRRSWATTKVSSYLRADVAAGRLDDGDGGHHKDALIEELLRSYRGRCNSCSLEVVWAVYSERQPTLDRLDYALPHTPGNVDVKCLRCN 438
            TVHAVQGRTVEG+L+IHQARH Y+DVYW+YTAISRATGPSN  V+DD+HRS SDM +  R SW + KVSSY+ ADVAA RL   +GG +++AL++EL RSY GRCN C+ ++VWAVYSERQPTLDRLD ALPHT  NVDVKCL+CN
Sbjct: 1086 TVHAVQGRTVEGRLIIHQARHPYADVYWIYTAISRATGPSNVRVIDDIHRSKSDMSDRERASWISGKVSSYIYADVAAERLGSDEGGQYREALVQELQRSYGGRCNLCNHDLVWAVYSERQPTLDRLDCALPHTIDNVDVKCLKCN 1231

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BLAST of mRNA_Ecto-sp13_S_contig10436.415.1 vs. uniprot
Match: D7FV89_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV89_ECTSI)

HSP 1 Score: 226 bits (577), Expect = 5.090e-66
Identity = 102/146 (69.86%), Postives = 122/146 (83.56%), Query Frame = 1

Query:    1 TVHAVQGRTVEGKLVIHQARHRYSDVYWLYTAISRATGPSNAVVLDDVHRSVSDMPEHTRRSWATTKVSSYLRADVAAGRLDDGDGGHHKDALIEELLRSYRGRCNSCSLEVVWAVYSERQPTLDRLDYALPHTPGNVDVKCLRCN 438
            TVHAVQGRTVEG+L+IHQARHR++DV+WLYTA+SRATGPSN  V+DD HR  S+M +  R SW + KVSSY+ AD+A+GRL   +GG H++AL +EL R+YRG CN C  E+VWAVYSERQPTLDRLD ALPHT GNVDVKCL+CN
Sbjct: 1066 TVHAVQGRTVEGRLIIHQARHRHADVHWLYTAVSRATGPSNVWVIDDAHRRDSNMSDRERASWVSRKVSSYIYADIASGRLGSDEGGQHREALAQELHRAYRGTCNLCHHELVWAVYSERQPTLDRLDCALPHTIGNVDVKCLKCN 1211

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BLAST of mRNA_Ecto-sp13_S_contig10436.415.1 vs. uniprot
Match: A0A6H5JCI8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCI8_9PHAE)

HSP 1 Score: 226 bits (576), Expect = 7.840e-66
Identity = 102/146 (69.86%), Postives = 123/146 (84.25%), Query Frame = 1

Query:    1 TVHAVQGRTVEGKLVIHQARHRYSDVYWLYTAISRATGPSNAVVLDDVHRSVSDMPEHTRRSWATTKVSSYLRADVAAGRLDDGDGGHHKDALIEELLRSYRGRCNSCSLEVVWAVYSERQPTLDRLDYALPHTPGNVDVKCLRCN 438
            TVHAVQGRTVEG+L+IHQARHR++DV+WLYTA+SRATGPSN +V+DD+HRS SDM +  R SW + KVS+Y+ ADV+A RL   +GG HK AL+EELL SY GRC+ C  E+VWA+YSERQPTLDRLD ALPHT GNVDV CL+C+
Sbjct: 1227 TVHAVQGRTVEGRLIIHQARHRHADVHWLYTAVSRATGPSNVMVIDDIHRSESDMSDRERISWVSRKVSNYIYADVSAERLSADEGGQHKQALVEELLNSYWGRCSLCYCELVWALYSERQPTLDRLDCALPHTIGNVDVNCLKCS 1372

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig10436.415.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig10436.415.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LFQ2_ECTSI	1.640e-94	99.32	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
A0A6H5KZQ7_9PHAE	2.860e-89	65.32	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KBM1_9PHAE	5.330e-79	81.51	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L0U3_9PHAE	9.160e-72	71.23	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L8I4_9PHAE	4.470e-71	78.08	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KWL4_9PHAE	2.090e-68	71.23	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L2B8_9PHAE	1.690e-66	69.18	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7FQN9_ECTSI	2.050e-66	71.23	Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2...	[more]
D7FV89_ECTSI	5.090e-66	69.86	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5JCI8_9PHAE	7.840e-66	69.86	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig10436	contig	Ecto-sp13_S_contig10436:3856..4293 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	0
Start	0
Seed ortholog score	305.1
Seed ortholog evalue	1.8e-80
Seed eggNOG ortholog	2880.D8LFQ2
Model size	438
Hectar predicted targeting category	other localisation
Exons	1
EggNOG OGs	2E3IK@1,2SAKM@2759
Ec32 ortholog description	P-loop containing nucleoside triphosphate hydrolase
Ec32 ortholog	Ec-16_001060.1
Cds size	438
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681462530.7744396-CDS-Ecto-sp13_S_contig10436:3855..4293	1681462530.7744396-CDS-Ecto-sp13_S_contig10436:3855..4293	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig10436 3856..4293 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig10436.415.1	prot_Ecto-sp13_S_contig10436.415.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig10436 3856..4293 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig10436:3856..4293-
coding sequence from alignment at Ecto-sp13_S_contig10436:3856..4293-

protein sequence of mRNA_Ecto-sp13_S_contig10436.415.1

>prot_Ecto-sp13_S_contig10436.415.1 ID=prot_Ecto-sp13_S_contig10436.415.1|Name=mRNA_Ecto-sp13_S_contig10436.415.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=146bp
TVHAVQGRTVEGKLVIHQARHRYSDVYWLYTAISRATGPSNAVVLDDVHR
SVSDMPEHTRRSWATTKVSSYLRADVAAGRLDDGDGGHHKDALIEELLRS
YRGRCNSCSLEVVWAVYSERQPTLDRLDYALPHTPGNVDVKCLRCN

mRNA from alignment at Ecto-sp13_S_contig10436:3856..4293-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig10436.415.1 ID=mRNA_Ecto-sp13_S_contig10436.415.1|Name=mRNA_Ecto-sp13_S_contig10436.415.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=438bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10436:3856..4293- (Ectocarpus species13 EcNAP12_S_4_19m)
ACGGTGCACGCGGTTCAGGGTCGCACAGTGGAAGGGAAATTGGTGATCCA
CCAGGCTCGACACCGGTATTCAGACGTTTACTGGCTTTACACAGCCATCA
GCCGAGCGACGGGGCCCTCAAACGCCGTAGTTCTCGATGACGTCCATCGG
AGCGTCAGCGACATGCCTGAACACACCAGGAGGTCGTGGGCGACCACAAA
GGTCTCGAGCTACCTGCGCGCCGATGTGGCCGCCGGGCGGCTAGATGACG
GGGACGGGGGGCATCACAAGGACGCCCTTATCGAAGAACTCTTGCGCTCC
TACCGTGGGAGATGCAACTCATGCTCGCTCGAGGTCGTCTGGGCAGTGTA
CAGCGAGCGTCAGCCCACGCTTGATCGTCTCGACTACGCCCTACCCCACA
CGCCGGGCAACGTTGACGTAAAGTGTTTGAGGTGCAAC

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10436:3856..4293-

>mRNA_Ecto-sp13_S_contig10436.415.1 ID=mRNA_Ecto-sp13_S_contig10436.415.1|Name=mRNA_Ecto-sp13_S_contig10436.415.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=438bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10436:3856..4293- (Ectocarpus species13 EcNAP12_S_4_19m)
ACGGTGCACGCGGTTCAGGGTCGCACAGTGGAAGGGAAATTGGTGATCCA
CCAGGCTCGACACCGGTATTCAGACGTTTACTGGCTTTACACAGCCATCA
GCCGAGCGACGGGGCCCTCAAACGCCGTAGTTCTCGATGACGTCCATCGG
AGCGTCAGCGACATGCCTGAACACACCAGGAGGTCGTGGGCGACCACAAA
GGTCTCGAGCTACCTGCGCGCCGATGTGGCCGCCGGGCGGCTAGATGACG
GGGACGGGGGGCATCACAAGGACGCCCTTATCGAAGAACTCTTGCGCTCC
TACCGTGGGAGATGCAACTCATGCTCGCTCGAGGTCGTCTGGGCAGTGTA
CAGCGAGCGTCAGCCCACGCTTGATCGTCTCGACTACGCCCTACCCCACA
CGCCGGGCAACGTTGACGTAAAGTGTTTGAGGTGCAAC