mRNA_Ecto-sp13_S_contig1043.411.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1043.411.1
Unique NamemRNA_Ecto-sp13_S_contig1043.411.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig1043.411.1 vs. uniprot
Match: A0A6H5JRF9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRF9_9PHAE)

HSP 1 Score: 218 bits (556), Expect = 2.300e-59
Identity = 207/402 (51.49%), Postives = 246/402 (61.19%), Query Frame = 2
Query:   68 GPDQNSCVEVLVIAFNEMWGEKWDAKGWYTSTKELQLASLAFCKVCRTYQTLHLNVEAGTPRRLLSATDTPPLHPKRPCGTRLPRLRARSVTWNMPTAGELRNPIVAMTDSDRLVFGRGFQGNLEAVSWPQRLKTIDMR-DSTFNKPLERIRFPASLETIVLSERXXXXXXXXXXXXXXLQLIFCVGSSXXXXXXXXXXXXXXQEINXXXXXXXXXXDMVWXXXXLKLHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASCGDHAGSTVTVYADXXXXXXXXXXXXXXXXXTLGEHFRQSLHGLGTWIPNLEALRLLDHKDGSGTEES-LLRGIEWPMALRHLTVIKGSNLDGVTIPSLVQVDF 1267
            GP +  C+E L++A NE      D K WYTSTKELQLASL FC  CR  QT+HLNV+   PRRLL++ D PP HPKR C TR+PRLR+R VTWNMPTA +LR PI AMTD + L FG  F  +LEAV WP+ L+T++   DS F++ +E +++P  L+ +                    QLIF   SS XXXXXXXXXXXXX    XXXXXXXXXX    XXXX            XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                       C + AG+ + ++A+                  LG  FRQSL GLGTW+PNLE L LL H  GSG  +S  LR IEWP  LRHLT+++G+++DGV IP  VQV F
Sbjct:   45 GPTRKFCLEALIVALNETC----DGKSWYTSTKELQLASLDFCIACRNCQTVHLNVDEQIPRRLLASADAPPPHPKRLCWTRVPRLRSRRVTWNMPTAAKLRTPIFAMTDMEYLEFGDAFGDSLEAVPWPEHLRTMEFHHDSPFDQTIELVQWPPFLQNVTFGGDFNQPIERVKFPASLQQLIFRTSSSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTFGNRLNHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGW---------------------CDEFAGNGMVIFANFDQPIGSSVGPALLRRLVLGHMFRQSLQGLGTWMPNLEVLHLL-HYHGSGLGDSNFLREIEWPKGLRHLTLLEGTSIDGVDIPLAVQVLF 420          
BLAST of mRNA_Ecto-sp13_S_contig1043.411.1 vs. uniprot
Match: A0A6H5JUA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUA5_9PHAE)

HSP 1 Score: 198 bits (504), Expect = 4.980e-53
Identity = 193/407 (47.42%), Postives = 230/407 (56.51%), Query Frame = 2
Query:   68 GPDQNSCVEVLVIAFNEMWGEKWDAKGWYTSTKELQLASLAFCKVCRTYQTLHLNVEAGTPRRLLSATDTPPLHPKRPCGTRLPRLRARSVTWNMPTAGELRNPIVAMTDSDRLVFGRGFQGNLEAVSWPQRLKTIDMRD----------STFNKPLERIRFPASLETIVLSERXXXXXXXXXXXXXXLQLIFCVGSSXXXXXXXXXXXXXXQEINXXXXXXXXXXDMVWXXXXLKLHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASCGDHAGSTVTVYADXXXXXXXXXXXXXXXXXTLGEHFRQSLHGLGTWIPNLEALRLLDHKDGSGTEESLLRGIEWPMALRHLTVIKGSNLDGVTIPSLVQ 1258
            GP ++SC+  +++A NE      D K WYTSTKE QLASL FC  CR +QTL L V++ TPRRLL+A D PP HPKR CGTR+PRLRAR VTW++PTA  LRN I +M D+D L F R F+ +LEAV+WP+RLKT+++            S F++P+  + +P +LE +                                                                   L L XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX            GD     V V +    X             TLG++FRQSL  LGTW+PNLE   LL H   SGTE+S LRGIEWP  LR L V + S+L GV IPS V+
Sbjct:    6 GPARDSCLNAIIVALNETS----DGKSWYTSTKERQLASLEFCIACRNHQTLDLKVDSRTPRRLLAAADAPPPHPKRLCGTRVPRLRARRVTWDIPTAAGLRNSIYSMMDADSLEFVRAFEDSLEAVAWPRRLKTVEVSGIAEVAKFHDKSLFDQPIAGVVWPDTLEQLTFG----------------------------------------------------------------LFLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEVCFGVRQEVLGD-----VVVTSKFNRXIGASAWPKAMHRLTLGQNFRQSLQELGTWMPNLETFHLLHHIHDSGTEDSFLRGIEWPKGLRQLAVCRLSSLAGVVIPSTVE 339          
BLAST of mRNA_Ecto-sp13_S_contig1043.411.1 vs. uniprot
Match: A0A6H5JYF0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYF0_9PHAE)

HSP 1 Score: 196 bits (497), Expect = 2.160e-51
Identity = 259/402 (64.43%), Postives = 282/402 (70.15%), Query Frame = 2
Query:  137 DAKGWYTSTKELQLASLAFCKVCRTYQTLHLNVEAGTPRRLLSATDTPPLHPKRPCGTRLPRLRARSVTWNMPTAGELRNPIVAMTDSDRLVFGRGFQGNLEAVSWPQRLKTIDMR-DSTFNKPLERIRFPASLETIVLSERXXXXXXXXXXXXXXLQLIFCVGSSXXXXXXXXXXXXXXQEINXXXXXXXXXXDMVWXXXXLKL-------------------------HLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASCG-DHAGSTVTVYADXXXXXXXXXXXXXXXXXTLGEHFRQSLHGLGTWIPNLEALRLLDHKDGSGTEESLLRGIEWPMALRHLTVIKGSNLDGVTIPSLVQV 1261
            D K WYTSTKELQ ASL FC  CR YQTL L V+  TPR LL+A D P  H KRPC TR+PRLRAR V WNMPTA EL++PI A+ D  RL FG  F+G+LE+V+WPQRLK ID    S FN+P+E + FP SL  + LS+ XXXXXXXXXXXXXX          XXXXXXXXXXXXXX    XXXXXXXXXX    XXXX                               XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   S G DHA     ++++ XXXXXXXXXXXXXXX TLG  FRQSL GLGTWIPNLE    LDH +GSG E+SLLRGIEWP  LR L V + S LDGV IPS V+V
Sbjct:    3 DGKRWYTSTKELQQASLEFCIACRKYQTLRLRVDVQTPRTLLAAVDAPSPHSKRPCRTRVPRLRARRVIWNMPTATELKSPIFALKDVVRLDFGPAFEGSLESVAWPQRLKEIDFSWGSLFNQPIEGVEFPPSLLELRLSDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGYRSRXXXXXXXXXXXXXXXXXXXGEAFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKHESQGFDHA----IMFSEFXXXXXXXXXXXXXXXLTLGHKFRQSLQGLGTWIPNLEIFHFLDHSNGSGDEDSLLRGIEWPTGLRQLAVFRDSRLDGVIIPSTVEV 400          
BLAST of mRNA_Ecto-sp13_S_contig1043.411.1 vs. uniprot
Match: D7FH81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH81_ECTSI)

HSP 1 Score: 176 bits (445), Expect = 1.150e-46
Identity = 92/162 (56.79%), Postives = 110/162 (67.90%), Query Frame = 2
Query:   68 GPDQNSCVEVLVIAFNEMWGEKWDAKGWYTSTKELQLASLAFCKVCRTYQTLHLNVEAGTPRRLLSATDTPPLHPKRPCGTRLPRLRARSVTWNMPTAGELRNPIVAMTDSDRLVFGRGFQGNLEAVSWPQRLKTID-MRDSTFNKPLERIRFPASLETIVL 550
            G   N C+  L++A NE      D   WYTSTKELQ ASL FC  CR Y  +HL V+   PR LL+A D PP HPKR C TR+PRLRARSVTWNM  A EL NPI A+TD D L FG  F G+LEAV+WP+RLK I+ +  S FN+PLE I++P SL+ +VL
Sbjct:    8 GLTHNPCLSSLIVALNETC----DGTSWYTSTKELQRASLEFCIACRNYPIMHLKVDPQIPRNLLAAADAPPPHPKRLCWTRVPRLRARSVTWNMRAAAELGNPIFAITDVDCLEFGGTFDGSLEAVTWPRRLKMIEFLYTSPFNQPLELIKWPESLQHLVL 165          
BLAST of mRNA_Ecto-sp13_S_contig1043.411.1 vs. uniprot
Match: A0A6H5KPY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPY7_9PHAE)

HSP 1 Score: 182 bits (463), Expect = 2.520e-45
Identity = 93/168 (55.36%), Postives = 116/168 (69.05%), Query Frame = 2
Query:   50 SGSAGVGPDQNSCVEVLVIAFNEMWGEKWDAKGWYTSTKELQLASLAFCKVCRTYQTLHLNVEAGTPRRLLSATDTPPLHPKRPCGTRLPRLRARSVTWNMPTAGELRNPIVAMTDSDRLVFGRGFQGNLEAVSWPQRLKTIDMRDST-FNKPLERIRFPASLETIVL 550
            S S  +GP ++SC++ L +A NE      D K WYTSTKELQLASL  C  CR YQTLHL V+A TPRRLL+A D P  HPKR CGTR+PRLRAR  TWN+PTA  +R  I A  D D L FG+ F G+L+A+ WP+RLKTI+ R S+  N+ L+ + +PASL  + L
Sbjct:  124 SPSCTLGPTRSSCLKTLTVALNETC----DGKSWYTSTKELQLASLELCMACRHYQTLHLTVDAHTPRRLLAAADAPSPHPKRLCGTRVPRLRARRATWNVPTASGMRTSIFATMDVDYLEFGQAFHGSLDAIVWPRRLKTIEFRQSSPLNRLLDGVSWPASLRKVCL 287          
BLAST of mRNA_Ecto-sp13_S_contig1043.411.1 vs. uniprot
Match: A0A6H5JZZ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZZ4_9PHAE)

HSP 1 Score: 180 bits (457), Expect = 6.170e-44
Identity = 90/160 (56.25%), Postives = 113/160 (70.62%), Query Frame = 2
Query:   68 GPDQNSCVEVLVIAFNEMWGEKWDAKGWYTSTKELQLASLAFCKVCRTYQTLHLNVEAGTPRRLLSATDTPPLHPKRPCGTRLPRLRARSVTWNMPTAGELRNPIVAMTDSDRLVFGRGFQGNLEAVSWPQRLKTIDMRD-STFNKPLERIRFPASLETI 544
            GP  N+C+  + +A     GE  D K WYTSTKELQLASL FC  CR YQTLHL V+   PR LL+A D PP HPKR    R+PRLRAR VTWNMPTA ELR+PI A+ D D L FG  F+G+LEAV+WP+RL++I   + S FN P++ +++PASL+ +
Sbjct:   30 GPTSNTCLNAIYVAL----GETRDGKSWYTSTKELQLASLEFCMACRAYQTLHLIVDVRIPRMLLAAADGPPQHPKRLSRRRVPRLRARHVTWNMPTAAELRSPIFALMDLDHLDFGSAFEGSLEAVTWPRRLESIAFHNFSPFNTPIDLVKWPASLKRL 185          
BLAST of mRNA_Ecto-sp13_S_contig1043.411.1 vs. uniprot
Match: A0A6H5JRK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRK5_9PHAE)

HSP 1 Score: 174 bits (441), Expect = 8.900e-43
Identity = 232/391 (59.34%), Postives = 255/391 (65.22%), Query Frame = 2
Query:   98 LVIAFNEMWGEKWDAKGWYTSTKELQLASLAFCKVCRTYQTLHLNVEAGTPRRLLSATDTPPLHPKRPCGTRLPRLRARSVTWNMPTAGELRNPIVAMTDSDRLVFGRGFQGNLEAVSWPQRLKTIDMRDSTFNKPLERIRFPASLETIVLSERXXXXXXXXXXXXXXLQLIFCVGSSXXXXXXXXXXXXXXQEINXXXXXXXXXX--------DMVWXXXXLKLHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASCGDHAGSTVTVYADXXXXXXXXXXXXXXXXXTLGEHFRQSLHGLGTWIPNLEALRLLDHKDGSGTEESLLRGIEWPMALRHLTVIKGSNLDGVTIP 1246
            L++A NEM     D K WYTSTKELQLASL FC  CR YQ L L V+A TPR LL+A D PP H KRPC TR+PRLRAR V WNMPTA ELR  + A+ D + L FG  F G+LEAV WP  LK I    S FN+        ASL+ + L   XXXXXXXXXXXXXX          XXXXXXXXXXXXXX    XXXXXXXXXX        D+  XXXX     XXXXXXXX     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX            + +                  TLG  F++SL GLGT +PNLEA  LLDH++GSG+E+SL RGIEWP  LRHL V   S+LDGV IP
Sbjct:   21 LILALNEMC----DGKRWYTSTKELQLASLEFCLACRKYQILELKVDAQTPRNLLAAVDAPPPHTKRPCRTRVPRLRARRVKWNMPTATELRTLMFALKDVNCLRFGGVFNGSLEAVVWPPPLKQIIFFSSEFNQXXXXXXXXASLQKLDLENSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSLKEDVEXXXXXXXXXXXXXXXXXXEWATFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMHDGEGFENAVMLSAFNQRVDMCEWPVSMRRLTLGHKFKESLQGLGTRMPNLEAFHLLDHRNGSGSEDSL-RGIEWPKVLRHLVVFSNSSLDGVVIP 406          
BLAST of mRNA_Ecto-sp13_S_contig1043.411.1 vs. uniprot
Match: D7G2S9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2S9_ECTSI)

HSP 1 Score: 150 bits (380), Expect = 8.650e-36
Identity = 126/398 (31.66%), Postives = 153/398 (38.44%), Query Frame = 2
Query:   68 GPDQNSCVEVLVIAFNEMWGEKWDAKGWYTSTKELQLASLAFCKVCRTYQTLHLNVEAGTPRRLLSATDTPPLHPKRPCGTRLPRLRARSVTWNMPTAGELRNPIVAMTDSDRLVFGRGFQGNLEAVSWPQRLKTIDMRDSTFNKPLERIRFPASLETIVLSERXXXXXXXXXXXXXXLQLIFCVGSSXXXXXXXXXXXXXXQEINXXXXXXXXXXDMVWXXXXLKLHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASCGDHAGSTVTVYADXXXXXXXXXXXXXXXXXTLGEHFRQSLHGLGTWIPNLEALRLLDHKDGSGTEESLLRGIEWPMALRHLTVIKGSNLDGVTIPSLVQV 1261
            GP ++SC+  LVIA NE      + + WYTSTKELQLASL FC  CR YQTLHL V+A  PRRLL+  D PP HP+  C TR+PRLRAR VTW M  A EL  PI AMTD D L FG   + +LEA      L+    RD         + +  S                             V SS              + +N          D +                                                                              C     + V V                     LG+ F+QSL GLGTW+PNLE LRL D +D     +SLL GI WP  LR L V + + +DGVTIPS V+V
Sbjct:  107 GPSRSSCLNALVIALNETC----NGESWYTSTKELQLASLEFCVACRNYQTLHLKVDAQIPRRLLARADAPPPHPELLCRTRVPRLRARRVTWGMRKAAELSIPIFAMTDVDCLKFG---ETSLEA------LRLWHGRDGWKRSSFSFLHYSTSRS---------------------------VWSSGQHLC---------RRLNSVAVVIARAYDWI---------------------------------------------------------------------------CDRCRRKRDNDVLVLRPTHRQPWLAYVFASTP---LGDDFKQSLQGLGTWMPNLEVLRLFDFRDPDFGNDSLLLGIGWPTGLRQLAVYECTKMDGVTIPSTVEV 377          
BLAST of mRNA_Ecto-sp13_S_contig1043.411.1 vs. uniprot
Match: D7FUL5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUL5_ECTSI)

HSP 1 Score: 135 bits (340), Expect = 2.410e-31
Identity = 78/167 (46.71%), Postives = 103/167 (61.68%), Query Frame = 2
Query:   56 SAGVGPDQNSCVEVLVIAFNEMWGEKWDAKGWYTSTKELQLASLAFCKVCRTYQTLHLNVEAGTPRRLLSATDTPPLHPKRPCG-TRLPRLRARSVTWNMPTAGELRNP--IVAMTDSDRLVFGRGFQGNLEAVSWPQRLKTIDMRD-STFNKPLERIRFPASLETI 544
            S   GP ++SC+  +V+A +E      D K WYTSTKELQLASL FC  CR +QT+HL V+   PRRLL+A D PP   +     TR P   A     +  ++G +  P  + AMTD D L FG  F+GNLEAV+WP+ LKTID+   S F KP++ I +P SL+T+
Sbjct:  126 STAPGPGRSSCLNAIVVALSETC----DGKSWYTSTKELQLASLGFCTACRNHQTVHLKVDEHIPRRLLAAADAPPPASEAAVSDTRAPTHSASCDVEHADSSG-IEEPCTVFAMTDVDHLEFGWDFEGNLEAVAWPRWLKTIDLHPWSNFGKPIDLIEWPDSLQTL 287          
BLAST of mRNA_Ecto-sp13_S_contig1043.411.1 vs. uniprot
Match: A0A6H5K0U4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0U4_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 1.360e-17
Identity = 53/136 (38.97%), Postives = 76/136 (55.88%), Query Frame = 2
Query:   59 AGVGPDQNSCVEVLVIAFNEMWGEKWDAKGWYTSTKELQLASLAFCKVCRTYQTLHLNVEAGTPRRLLSATDTPPLHPKRPCGTRLPRLRARSVTWNMPTAGELRNPIVAMTDSDRLVFGRGFQGNLEAVSWPQRL 466
            +G  P  +  ++V+++  N+  G+    K W+ STKELQLASL  C+ CR    LHL V   TP RLL+  D+P    +   GTR+PRLRAR V+W++ +A  L + I A+  +    F       L+AV WP  L
Sbjct:   20 SGAAPTNSRFLDVVIVVLNQACGDG-GQKHWFASTKELQLASLQLCEACRDAAALHLRVNTSTPLRLLAPADSPSDGSEE--GTRVPRLRAREVSWDLTSADRLSSSIYALASAQVFTFSDSLNAVLDAVVWPTSL 152          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1043.411.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A6H5JRF9_9PHAE2.300e-5951.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUA5_9PHAE4.980e-5347.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYF0_9PHAE2.160e-5164.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FH81_ECTSI1.150e-4656.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KPY7_9PHAE2.520e-4555.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZZ4_9PHAE6.170e-4456.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRK5_9PHAE8.900e-4359.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2S9_ECTSI8.650e-3631.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FUL5_ECTSI2.410e-3146.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K0U4_9PHAE1.360e-1738.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1043contigEcto-sp13_S_contig1043:6028..10783 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2653
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-13_004370.1
Cds size1254
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462530.456843-UTR-Ecto-sp13_S_contig1043:6027..60581681462530.456843-UTR-Ecto-sp13_S_contig1043:6027..6058Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1043 6028..6058 +
1681462530.4877498-UTR-Ecto-sp13_S_contig1043:9415..107831681462530.4877498-UTR-Ecto-sp13_S_contig1043:9415..10783Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1043 9416..10783 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462530.4685693-CDS-Ecto-sp13_S_contig1043:6058..60951681462530.4685693-CDS-Ecto-sp13_S_contig1043:6058..6095Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1043 6059..6095 +
1681462530.4786754-CDS-Ecto-sp13_S_contig1043:8198..94151681462530.4786754-CDS-Ecto-sp13_S_contig1043:8198..9415Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1043 8199..9415 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1043.411.1prot_Ecto-sp13_S_contig1043.411.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1043 6059..9415 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1043.411.1

>prot_Ecto-sp13_S_contig1043.411.1 ID=prot_Ecto-sp13_S_contig1043.411.1|Name=mRNA_Ecto-sp13_S_contig1043.411.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=418bp
MEGDAGSGSAGVGPDQNSCVEVLVIAFNEMWGEKWDAKGWYTSTKELQLA
SLAFCKVCRTYQTLHLNVEAGTPRRLLSATDTPPLHPKRPCGTRLPRLRA
RSVTWNMPTAGELRNPIVAMTDSDRLVFGRGFQGNLEAVSWPQRLKTIDM
RDSTFNKPLERIRFPASLETIVLSERFNQPIDRVEFPASLLQLIFCVGSS
FNQPITGGFLPTSLQEINLGEQFNQRIEDMVWPPSLLKLHLGYEFDQPIE
RVVFPPSLQELTVEGSFNQPIEGVSWPDSLQRLTFGFSFNRSIDNVRWPS
SLQEITFASCGDHAGSTVTVYADFNQSIGISVWPASLRRLTLGEHFRQSL
HGLGTWIPNLEALRLLDHKDGSGTEESLLRGIEWPMALRHLTVIKGSNLD
GVTIPSLVQVDFVEHVL*
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mRNA from alignment at Ecto-sp13_S_contig1043:6028..10783+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1043.411.1 ID=mRNA_Ecto-sp13_S_contig1043.411.1|Name=mRNA_Ecto-sp13_S_contig1043.411.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4756bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1043:6028..10783+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGTCTGAATATAAGTGACACACGGAGCGTCATGGAGGGAGACGCCGGTT CGGGGTCCGCAGGGGTTGGTGAGCAAATAACGAGCTTTATCACTTGGTGC AGAAGTCATGTTTTTTGTTCGTTTTTCTCTTTTAGGGAAATGGATTCGAG CCTTGCGAGCACCACACGATTTTCGTTTTGTTTTTCTTCCTTTCAGTCGC AGGTGCGGCGCTTGTGCTTTGGTGAACGGCGTCGGTAACAGGCTGGTATT CGCTGTGAGATATGTTATTAGCTGAAAGGTATTCTGAGCTTCTTCCGAGT CCCGCGCGATCGGCAGTGTCTACGATTGAGCTTTTGTCTTGCGATCCCGG GATCCAAACTTTTTTGTTCTAGATGGCATACAATCCGCAACGTGTTTTTT TTTAAGAGTAGCTCTTCGTGCACTTGCAGCAACGTCGTTGTTTCCATGGC GCGGTGCTCGCATTTTTGACATGGTTCGACGGCAGCCTGGCTCCCCCCCT TTTTTTTTTGTATGCGTGGTACCGCATGTAGTTGGACTCGACTGCTGATG CATCGATTTTGTCGAAGCGGAATGCGTTTGTGGCTCTTTTTCCTTGGGTG TGCTCCATGGCTGACAGCTGTAAGACAAGCAACATGAGGTTTCTTATTGC ATGAAAGGCTACGGCGTGCTCATGACACTCGATCAATGGTCCTGTGAAAG TCCTCAGCCGGCAGTGTTTCCTGCAGTAGACCAGGGCATGCAACCGTTGC ACGTATTACAGATTTCTTATTTGGACACGCGCGAGAATATATCAAATGAC TGAGTCGCAAGTGACGAAGCATTTCCCCTGGACTATACAGATGGCGCCCG CACTTGCGAATCTGGCGGGTACAAACGTATTGCTGCCGGTTTCGACTCGC TACACTACAGCTTACATCACGGCCATCTGTAGCTCGCAAGAGCAACAAAA AAAAACAACTTCGGCCAAATCTAGAGGTTCTTCAGTGCGGATGCTATCTG TTGTGAGGAAACAGGTGCATTCGAAAAGCCTTCGAGGGAGATGGCCGTAT ATTAGAACTAGTGAACAAGGTGCATTTCCAACCTTGATCTCAGGCTGCGA CCAATCCAAAACCAGCACATGCCTTCGATAGTACCGGCCAAGCTAGCCGT GCAGGTGCTGTTTAGTCAAGTTCTAAGCCCGCGGGCTCTGTCGAGACTTA GGCATTGCATGCCTTTGCCGGAAAGGGGGGTTGCGCTTGCAGTCTCGACT TCTGTTCCCATTCCTTCACCATCGCCCACACGTGGTGGGATCCTTGTTTG ACGTCCGGGATTTGAGTAGTTTCCCCTAACTTCACCGTGTTGAGGGCACG CCGTCAGTCTGCTTGCCTGTTGGCTGAAACCTGTTTTATGAAGTCGCGTG ATTTATTCGCAATAAGGCGTTCAAAGGTAGTGTTTTAGAAAAAATCTCCA AAGTTCCTGGTTTACGCTTTGTACTTGCGATGTCCAAGTGTTTCTTGCCG TCGCGAACGTTTTTTCTACCCACCATGGTTAATACTATTTCTTCAAGGAT CATTCCTCTTTCAAGTAGGCCGAAACGCAACGAATACTTCTTCCGACAAA CGTACGAAGGTGTGACGTACACTGAGGATGCTACGCTCGAGAAAGGGTTC GCCCAGCCCTTCGTGGAAAAATCTCAATACCATCGGCGGGTAGTTGCGGT CAGCGTCGGCCTGTGGTGTTAAATCCTCAAGACGTTGGCCATCGTGCACA AGACAGCGGAACACCCAACGTTGTTACCACGACAACCATAACGCACATTC GCCTTCAGCCAATCCCTATCGTTCATGTCTCTCACTTGGTAGTCAGCAAA CCCCGGTCAAAGCTTCGACTTTTTCATCTGAAGTCGATGGTCTTTTTTTT TGTGCAAGCAGGTTGGGTGTGGAATGATTTGACCAATCAAAAGATGTGTA TCGCCGACAAGACGAAACAAAAACCAAAGATTTGGGGATTTGAGGCAACC CCCGCCAGGGACATCTGTTTGTACAAAAGCGTGGGCATTCCACCGTTTTC GTTTCCGGTTCTATCATGGCGCTGTAGCAGTTATGTGGTTTGCGTTCAAG TGCTGAGAGGTGTCGGAAGACGCCATATTTTTCTCGACGAATACCCCCGT ATATCGTGCTTTCTGCCGCAGGACCCGATCAGAACTCGTGCGTAGAGGTC CTCGTCATTGCTTTCAACGAGATGTGGGGCGAGAAGTGGGACGCAAAGGG TTGGTACACGTCGACCAAGGAGCTGCAGCTGGCGTCATTGGCGTTCTGTA AGGTGTGCAGAACTTATCAAACCTTGCACTTGAATGTCGAGGCAGGAACG CCACGCAGGCTGCTGTCCGCCACCGACACCCCACCTCTGCACCCGAAGCG GCCATGTGGCACACGCTTGCCGCGTCTACGAGCGCGGAGCGTGACTTGGA ACATGCCCACAGCTGGAGAATTGAGGAACCCCATCGTTGCAATGACGGAC TCGGACCGCCTGGTGTTTGGCCGTGGGTTTCAAGGCAACCTGGAAGCTGT GTCATGGCCGCAACGGCTTAAAACGATCGACATGCGCGACTCGACTTTCA ACAAGCCTCTCGAACGGATAAGATTTCCGGCGTCGCTGGAGACAATCGTG CTCTCGGAAAGGTTCAACCAACCGATCGACCGTGTCGAGTTTCCGGCATC GCTACTGCAGCTAATATTCTGCGTTGGTTCAAGTTTCAACCAACCGATTA CCGGAGGTTTTCTGCCGACTTCGCTGCAGGAGATTAACTTGGGGGAACAG TTCAACCAACGTATTGAAGATATGGTTTGGCCGCCTTCCCTGCTGAAACT CCATTTGGGCTACGAATTCGACCAGCCGATCGAACGGGTTGTTTTTCCGC CATCGCTGCAAGAGCTCACCGTTGAGGGGAGCTTTAACCAGCCCATCGAG GGAGTTTCATGGCCAGATTCTCTTCAGAGGCTCACTTTTGGATTTAGTTT CAACCGGTCAATTGACAACGTGAGATGGCCGTCGTCATTGCAAGAGATTA CGTTTGCATCTTGCGGAGATCACGCGGGCAGTACGGTGACGGTGTATGCG GACTTCAACCAGAGCATCGGCATAAGTGTTTGGCCTGCATCGCTCCGGCG ACTCACACTAGGCGAACATTTCAGGCAGTCACTGCATGGACTGGGAACTT GGATTCCCAACCTTGAGGCGCTTCGCCTTCTTGACCATAAGGATGGTTCG GGTACCGAAGAAAGCCTTCTCCGCGGAATCGAATGGCCTATGGCCCTTCG TCACCTGACCGTGATTAAAGGATCGAATTTAGATGGGGTCACAATTCCTT CACTTGTGCAAGTCGATTTCGTGGAGCACGTGTTATGATTGTCATGAGAA AAGCAAATTTTTCGGTAGTCTGATGCCTCGCTAACCTTCAAAGAAGCTTT CGTGCGAAACGTATGGAAGTGGATATTATTTTCGGAAAGCAGAGAGTAGT ACCGTCACCAACAATCGGAGAGCTTGCATGGACACCAACAATTACTGTCA CATTAGGCGATTTTTCTCACGTCGTTGATGACTCGGAGATGAAACCTCCA ACTGTTCCTGTTCAATGTATTTATAGTCTACGTACTGTTCCGGGTTTGAT GGTATGTGCTCTTTGAGATTTCTGTGAGGATTCGTCCAAGACGTCCGTAC GTTCCTGCTGCTCGTTACTCTACACAGTATCTGATCTTCACCATTCGACT GAGGTGACGTACCTTGGGGGTACATCAGAGTCGGTGTCTGGTCTAGACTA TGCGCAAAGGTTAGCACGGCGGATGGACAAATGTGAGGTGTTTGGCGAAC TTGGAATCTGCAGAACACCATGCGTGGTAGATCGCGTCTTCTAGCCGGGA GTGTGCTGTGTAGTGTTGTTCCTGATGCTTGGTGGAGGAGGTTCGCGGGG AATCGGTTGTCAAAGCAAGTCAAGTTCCTTCGTTGGTATTGCAACAACAT ATTTCCACACCCGCTGCTGAGGGCGCTCGTGACCATGATGTTACATGCAG CCGCTGCTGTCTAGATAACTCGGGTTGTGTATTGTCCACACACCTGGGTA GCCGCCTTTTGATTTGGAGATTTCCGGCCGGGCAGGGGGTATCGACTTTA GTTTCCCTATGTAAAGCATAGGTGCATGCGGCAGGAGCCAAGGTTGCCTG GGGATACCTCCATCTGCGAGCTATTGACCAACGTTTTCCTGCGATTTGCG ATCCGCCAAGACATGATCACCCGAATGAGGATACGCAGAACGTACAGCCC AACCCCATATAGCACACATGAATCATCATCACTAGCAGCGCACGAGTTGT TCCCGATGTCCGGTTTGTTCGCCGCGGGGTATTGTCCCGAAGAAGTCAGG CTTTGTCGTTTCGGTCCCCTGGGGGTGCCTGGGGGTGCCTGGGGGGGGGC TGGCTTGGTGAGTGGAGAATCTTCTTATTGGTACATCATTGCGATTGATT GTGTTGAGGTTGCATGGTGTTCGTCCTTAATTGCAAGTACACCCTAAGTA CAAACACTCGGTAGGCGTTCCCGTCTGTTGGATCTGTACGAAATCTCGAA CGTTCATACTAGGCGAACGTCGGCCCGGTTTCCAATGTAAATAAAATGGC ATAGGCCGAGTCTTGTGGGGCGGCATCGACGTCAGTCTGTCGGATTCTTC TCGAAAGGGAAGACTTCAAATATATTTCGTTGCTGTGAAAACAATCAACA CGCTAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1043:6028..10783+

>mRNA_Ecto-sp13_S_contig1043.411.1 ID=mRNA_Ecto-sp13_S_contig1043.411.1|Name=mRNA_Ecto-sp13_S_contig1043.411.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1254bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1043:6028..10783+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGGGAGACGCCGGTTCGGGGTCCGCAGGGGTTGGACCCGATCAGAA
CTCGTGCGTAGAGGTCCTCGTCATTGCTTTCAACGAGATGTGGGGCGAGA
AGTGGGACGCAAAGGGTTGGTACACGTCGACCAAGGAGCTGCAGCTGGCG
TCATTGGCGTTCTGTAAGGTGTGCAGAACTTATCAAACCTTGCACTTGAA
TGTCGAGGCAGGAACGCCACGCAGGCTGCTGTCCGCCACCGACACCCCAC
CTCTGCACCCGAAGCGGCCATGTGGCACACGCTTGCCGCGTCTACGAGCG
CGGAGCGTGACTTGGAACATGCCCACAGCTGGAGAATTGAGGAACCCCAT
CGTTGCAATGACGGACTCGGACCGCCTGGTGTTTGGCCGTGGGTTTCAAG
GCAACCTGGAAGCTGTGTCATGGCCGCAACGGCTTAAAACGATCGACATG
CGCGACTCGACTTTCAACAAGCCTCTCGAACGGATAAGATTTCCGGCGTC
GCTGGAGACAATCGTGCTCTCGGAAAGGTTCAACCAACCGATCGACCGTG
TCGAGTTTCCGGCATCGCTACTGCAGCTAATATTCTGCGTTGGTTCAAGT
TTCAACCAACCGATTACCGGAGGTTTTCTGCCGACTTCGCTGCAGGAGAT
TAACTTGGGGGAACAGTTCAACCAACGTATTGAAGATATGGTTTGGCCGC
CTTCCCTGCTGAAACTCCATTTGGGCTACGAATTCGACCAGCCGATCGAA
CGGGTTGTTTTTCCGCCATCGCTGCAAGAGCTCACCGTTGAGGGGAGCTT
TAACCAGCCCATCGAGGGAGTTTCATGGCCAGATTCTCTTCAGAGGCTCA
CTTTTGGATTTAGTTTCAACCGGTCAATTGACAACGTGAGATGGCCGTCG
TCATTGCAAGAGATTACGTTTGCATCTTGCGGAGATCACGCGGGCAGTAC
GGTGACGGTGTATGCGGACTTCAACCAGAGCATCGGCATAAGTGTTTGGC
CTGCATCGCTCCGGCGACTCACACTAGGCGAACATTTCAGGCAGTCACTG
CATGGACTGGGAACTTGGATTCCCAACCTTGAGGCGCTTCGCCTTCTTGA
CCATAAGGATGGTTCGGGTACCGAAGAAAGCCTTCTCCGCGGAATCGAAT
GGCCTATGGCCCTTCGTCACCTGACCGTGATTAAAGGATCGAATTTAGAT
GGGGTCACAATTCCTTCACTTGTGCAAGTCGATTTCGTGGAGCACGTGTT
ATGA
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