mRNA_Ecto-sp13_S_contig10426.409.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10426.409.1
Unique NamemRNA_Ecto-sp13_S_contig10426.409.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10426.409.1 vs. uniprot
Match: A0A6H5K8N1_9PHAE (Complex1_LYR_dom domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8N1_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 8.380e-28
Identity = 56/61 (91.80%), Postives = 59/61 (96.72%), Query Frame = 1 
Query:    1 MASIRREVLGGFRRLMRVRMVAFKDDTTMLEASKQQLRIEFNKNKAVTDPSKIGQQLSRPR 183
            MAS+RREVLGG+RRLMRVR+VAFKDDTTMLEASKQQLRIEFNKNKAVTDPSKIGQQ SR R
Sbjct:    1 MASLRREVLGGYRRLMRVRVVAFKDDTTMLEASKQQLRIEFNKNKAVTDPSKIGQQHSRAR 61
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BLAST of mRNA_Ecto-sp13_S_contig10426.409.1 vs. uniprot
Match: D8LJV8_ECTSI (Complex1_LYR_dom domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJV8_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 1.320e-24
Identity = 49/53 (92.45%), Postives = 53/53 (100.00%), Query Frame = 1 
Query:    1 MASIRREVLGGFRRLMRVRMVAFKDDTTMLEASKQQLRIEFNKNKAVTDPSKI 159
            MAS+RREVLGG+RRLMRVR+VAF+DDTTMLEASKQQLRIEFNKNKAVTDPSKI
Sbjct:    1 MASLRREVLGGYRRLMRVRVVAFEDDTTMLEASKQQLRIEFNKNKAVTDPSKI 53
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BLAST of mRNA_Ecto-sp13_S_contig10426.409.1 vs. uniprot
Match: H3AVY4_LATCH (Complex III assembly factor LYRM7 n=2 Tax=Latimeria chalumnae TaxID=7897 RepID=H3AVY4_LATCH)

HSP 1 Score: 46.6 bits (109), Expect = 5.930e-5
Identity = 24/50 (48.00%), Postives = 34/50 (68.00%), Query Frame = 1 
Query:   22 VLGGFRRLMRVRMVAFKDDTTMLEASKQQLRIEFNKNKAVTDPSKIGQQL 171
            +L  F++L R R   FKDD+ MLEAS+Q++  EF K+K  T P+KI + L
Sbjct:    7 ILQLFKKLHRTRQQVFKDDSRMLEASRQKINEEFRKSKNETSPAKIAELL 56
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10426.409.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K8N1_9PHAE8.380e-2891.80Complex1_LYR_dom domain-containing protein n=1 Tax... [more]
D8LJV8_ECTSI1.320e-2492.45Complex1_LYR_dom domain-containing protein n=1 Tax... [more]
H3AVY4_LATCH5.930e-548.00Complex III assembly factor LYRM7 n=2 Tax=Latimeri... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10426contigEcto-sp13_S_contig10426:274..459 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size186
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-01_009840.3
Cds size186
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462530.3193173-CDS-Ecto-sp13_S_contig10426:273..4591681462530.3193173-CDS-Ecto-sp13_S_contig10426:273..459Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10426 274..459 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10426.409.1prot_Ecto-sp13_S_contig10426.409.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10426 274..459 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10426.409.1

>prot_Ecto-sp13_S_contig10426.409.1 ID=prot_Ecto-sp13_S_contig10426.409.1|Name=mRNA_Ecto-sp13_S_contig10426.409.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=62bp
MASIRREVLGGFRRLMRVRMVAFKDDTTMLEASKQQLRIEFNKNKAVTDP
SKIGQQLSRPRA
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mRNA from alignment at Ecto-sp13_S_contig10426:274..459-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10426.409.1 ID=mRNA_Ecto-sp13_S_contig10426.409.1|Name=mRNA_Ecto-sp13_S_contig10426.409.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=186bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10426:274..459- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCTTCGATCCGACGTGAGGTACTGGGGGGCTTTAGGCGTCTCATGCG
CGTACGCATGGTTGCTTTCAAAGACGATACTACCATGCTTGAGGCATCAA
AACAACAGCTGCGAATAGAGTTCAACAAGAACAAGGCCGTCACCGACCCC
TCCAAGATAGGTCAGCAGCTCAGTAGACCAAGAGCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10426:274..459-

>mRNA_Ecto-sp13_S_contig10426.409.1 ID=mRNA_Ecto-sp13_S_contig10426.409.1|Name=mRNA_Ecto-sp13_S_contig10426.409.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=186bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10426:274..459- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCTTCGATCCGACGTGAGGTACTGGGGGGCTTTAGGCGTCTCATGCG
CGTACGCATGGTTGCTTTCAAAGACGATACTACCATGCTTGAGGCATCAA
AACAACAGCTGCGAATAGAGTTCAACAAGAACAAGGCCGTCACCGACCCC
TCCAAGATAGGTCAGCAGCTCAGTAGACCAAGAGCG
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