mRNA_Ecto-sp13_S_contig10423.406.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10423.406.1
Unique NamemRNA_Ecto-sp13_S_contig10423.406.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig10423.406.1 vs. uniprot
Match: D8LQ01_ECTSI (Structural maintenance of chromosomes protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ01_ECTSI)

HSP 1 Score: 527 bits (1357), Expect = 2.020e-171
Identity = 361/396 (91.16%), Postives = 362/396 (91.41%), Query Frame = 1
Query:    1 RFRTAFYLALRDTLVAPDMKTAMAAAYQNGRTVHRVVTADGKLIDRSGAMTGGGNSTKRGAMRIIGRAGGSAASSAGAXXAGIVSAARAEELAVEARRAEDAVKAARLKKKDAEECLKKLHARSKQLQTLIPKLEMRLQGVGASEEQYREQMEALQAQCKLTPEAEAQLKKLTKDLTKDENGLAKVSASLDXXXXXXXXXXXXXLEVGGERXXXXXXXXXXXXXXXXXXXXXXXXXTVEGEGERKKGEKVAKDADRKTKELEAVREKAQKAKDGFAGMEEKAFEVLKAFEAAEAEVNTKAEELREIAESYEKAKSLADKIRGVEVDISHQLQEYAKSINENKTKLKHWTGELKKLRKTHQKEAEDWGLEDEDEH--GVSDXXXXXXXXXXXGEGVT 1182
            RFRTAFYLAL DTLVAPDMKTAMAAAYQNGRTVHRVVTADGKLIDRSGAMTGGGNSTKRGAMRIIGR GGSA      XXAGIVSAARAEELAVEARRAEDAVKAARLKKKDAEECLKKLHARSKQLQTLIPKLEMRLQGVGASEEQYREQMEALQAQCKLTPEAEAQLKKLTKDLTKDEN          XXXXXXXXXXXXX       XXXXXXXXXXXXXXXXXXXXXXXXXTVEGEGERKKGEKVAKDADRKTKELEAVREKAQKAKDGFAGMEEKAFEVLKAFEAAEAEVNTKAEELREIAESYEKAKSLADKIRGVEVDISHQLQEYAKSINENKTKLKHWTGELKKLRK H+KEAEDWGLEDEDEH  GVSDXXXXX      GEGVT
Sbjct:  713 RFRTAFYLALPDTLVAPDMKTAMAAAYQNGRTVHRVVTADGKLIDRSGAMTGGGNSTKRGAMRIIGR-GGSAXXXXXXXXAGIVSAARAEELAVEARRAEDAVKAARLKKKDAEECLKKLHARSKQLQTLIPKLEMRLQGVGASEEQYREQMEALQAQCKLTPEAEAQLKKLTKDLTKDENXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVEGEGERKKGEKVAKDADRKTKELEAVREKAQKAKDGFAGMEEKAFEVLKAFEAAEAEVNTKAEELREIAESYEKAKSLADKIRGVEVDISHQLQEYAKSINENKTKLKHWTGELKKLRKVHKKEAEDWGLEDEDEHEHGVSDXXXXXGSEDERGEGVT 1107          
BLAST of mRNA_Ecto-sp13_S_contig10423.406.1 vs. uniprot
Match: A0A835YML7_9STRA (Structural maintenance of chromosomes protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YML7_9STRA)

HSP 1 Score: 130 bits (328), Expect = 5.510e-29
Identity = 154/367 (41.96%), Postives = 191/367 (52.04%), Query Frame = 1
Query:    1 RFRTAFYLALRDTLVAPDMKTAMAAAYQNGRTVHRVVTADGKLIDRSGAMTGGGNSTKRGAMRIIGRAGGSAASSAGAXXAGIVSAARAEELAVEARRAEDAVKAARLKKKDAEECLKKLHARSKQLQTLIPKLEMRLQGVGASEEQYREQMEALQAQCKLTPEAEAQLKKLTKDLTKDENGLAKVSASLDXXXXXXXXXXXXXLEVGGERXXXXXXXXXXXXXXXXXXXXXXXXXTVEGEGERKKGEKVAKDADRKTKELEAVREKAQKAKDGFAGMEEKAFEVLKAFEAAEAEVNTKAEELREIAESYEKAKSLADKIRGVEVDISHQLQEYAKSINENKTKLKHWTGELKKLRKTHQKEAEDWG 1101
            R+R AFYL L+DTLVAPD+  A A AY+ GR V RVVTA G+LIDRSGAM+G                    A +A       VSAA  E                                        +P   ++         QYR Q  AL+ QC+L PEA A+L  L   + KD+           XXXXXXXXXXXXX       XXXXXXXXXXXXXXXXXXXXXXXXX          G+K AKD  +K  ELE VRE+ +     FA +EE AF V+ A+E      + +  EL +    YE+ ++   KIRGVEVDI+HQL+EYA ++++N+TK KHW  EL KLR+ H  E  +WG
Sbjct:  668 RYRAAFYLGLQDTLVAPDLDVATAVAYRGGRCVARVVTAAGQLIDRSGAMSGXXXXXXXXXXXXXXXXXXXXAGAA-------VSAAEVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPXXXLQTAATEDGAAQYRAQAAALREQCELAPEAAARLAALRAAIAKDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDKSAKDGAKKEAELEGVRERLKGVAAEFAALEEAAFAVMTAYETTREAADARKAELEKATAKYEECRARVAKIRGVEVDIAHQLEEYATTLSDNETKAKHWRAELAKLRRLHAAEHAEWG 1027          
BLAST of mRNA_Ecto-sp13_S_contig10423.406.1 vs. uniprot
Match: F0YFI0_AURAN (Structural maintenance of chromosomes protein 4 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YFI0_AURAN)

HSP 1 Score: 90.5 bits (223), Expect = 1.420e-15
Identity = 101/369 (27.37%), Postives = 148/369 (40.11%), Query Frame = 1
Query:    1 RFRTAFYLALRDTLVAPDMKTAMAAAYQNGRTVHRVVTADGKLIDRSGAMTGGGNSTKRGAMRIIGRAGGSAASSAGAXXAGIVS--AARAEELAVEARRAEDAVKAARLKKKDAEECLKKLHARSKQLQTLI-PKLEMRLQGVGASEEQYREQMEALQAQCKLTPEAEAQLKKLTKDLTKDENGLAKVSASLDXXXXXXXXXXXXXLEVGGERXXXXXXXXXXXXXXXXXXXXXXXXXTVEGEGERKKGEKVAKDADRKTKELEAVREKAQKAKDGFAGMEEKAFEVLKAFEAAEAEVNTKAEELREIAESYEKAKSLADKIRGVEVDISHQLQEYAKSINENKTKLKHWTGELKKLRKTHQKEAEDW 1098
            ++  AFY+ALRDTLVA D+  A+  AY+   +  RVVT DGKLID SG M+GGG   K G + + G  GG + S+A A    + +   A AE+ +            A     D E+ LK    + K+L  L+ P LE  L     +  +   ++  L+A  +++   +    KL K L           A+ D             L+ GG+                           V  +   K G K AK  D+   +   +R K + A+D  A + E                                       I+ VE DI  Q+ +YA+++ EN TK  HWT EL KL K H +E  D+
Sbjct: 1477 KYAGAFYMALRDTLVAEDLDEAVKLAYRPDNSRWRVVTTDGKLIDTSGTMSGGGGKAKSGKITLTGGTGGVSRSAAAATGDEVTAKDVAAAEKASXXXXXXXXXXXXALA---DGEDALKDALRQLKRLAELVVPTLEAELAAGADTRARLASRVGELRAAAEVSASTKQAAAKLEKALASKRKAADAAQAAFDAVDADVAELRAAVLDAGGQALKDAVAKAEITRALADDAANEVEAIGVAVKAAAKAGAKAAKARDKALADAAGLRAKLEAAEDEVAALAEAQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIKAVEADIETQVDDYARALKENSTKAAHWTKELAKLAKEHAREVADF 1842          
BLAST of mRNA_Ecto-sp13_S_contig10423.406.1 vs. uniprot
Match: A0A1E7EQ09_9STRA (Structural maintenance of chromosomes protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EQ09_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 1.690e-14
Identity = 93/354 (26.27%), Postives = 159/354 (44.92%), Query Frame = 1
Query:   13 AFYLALRDTLVAPDMKTAMAAAYQNGRTVHRVVTADGKLIDRSGAMTGGGNSTKRGAMRIIGRAGGSAASSAGAXXAGIVSAARAEELAVEARRAEDAVKAARLKKKDAEECLKKLHARSKQLQTLIPKLEMRLQGVGASEEQYREQMEALQAQCKLTPEAEAQLKKLTKDLTKDENGLAKVSASLDXXXXXXXXXXXXXLEVGGERXXXXXXXXXXXXXXXXXXXXXXXXXTVEGEGERKKGEKVAKDADRKTKELEAVREKAQKAKDGFAGMEEKAFEVLKAFEAAEAEVNTKAEELREIAESYEKAKSLADKIRGVEVDISHQLQEYAKSINENKTKLKHWTGELKKLRKT 1074
            A YLA+ +TLVAPD++TA   AY   R   RVVT DGKLI+ +G M GGG + +RG MR+     G++   A +  AG+      E+L+ +       ++ +R +++  +E L+KL    K L+T +P+L + + G   + E+  + +  L+AQ +++ +   ++K L   + + ++ +                     L+ GG R                          VE    +K   K  K  D   K+L        +    F  +E +A  V++A+E  +     K   L    +  E+ K    +I+ +E+D+  QL    K I+E + K  HW  E+  LR+T
Sbjct:  650 ALYLAVGNTLVAPDLETASHWAYDFSRR-WRVVTLDGKLIETAGTMAGGGKNVRRGGMRL-----GNSRQPAISVSAGVDEEELIEKLSKQTDDLRATIQDSRNRRRSIKEELRKLTTSVKSLKTSMPRLSLEIDGCDTTREELTKLIPELRAQSEVSADDLQKVKVLEAKVEQCKSDMISCVELASKLEKMVSKLQKDILDAGGPRLKKQKGKCGKILSQLNETEKAFSSAKVEIVSSKKALAKAKKAKDTLDKQLINCGSILTEKTTEFNSLESEALVVIQAYEEVKEIEEKKRIALEGATKEAEELKQSQSEIQFIEIDLLGQLDALKKQISECRKKKTHWENEISTLRET 997          
BLAST of mRNA_Ecto-sp13_S_contig10423.406.1 vs. uniprot
Match: A0A1Z5JL04_FISSO (Structural maintenance of chromosomes protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JL04_FISSO)

HSP 1 Score: 82.8 bits (203), Expect = 3.930e-13
Identity = 93/356 (26.12%), Postives = 157/356 (44.10%), Query Frame = 1
Query:   13 AFYLALRDTLVAPDMKTAMAAAYQNGRTVHRVVTADGKLIDRSGAMTGGGNSTKRGAMRIIGRAGGSAASSAGAXXAGIVSAARAEELAVEARRAEDAVKAARLKKKDAEECLKKLHARSKQLQTLIPKLEMRLQGVGASEEQYREQMEALQAQCKLTPEAEAQLKKLTKDLTK---DENGLAKVSASLDXXXXXXXXXXXXXLEVGGERXXXXXXXXXXXXXXXXXXXXXXXXXTVEGEGERKKGEKVAKDADRKTKELEAVREKAQKAKDGFAGMEEKAFEVLKAFEAAEAEVNTKAEELREIAESYEKAKSLADKIRGVEVDISHQLQEYAKSINENKTKLKHWTGELKKLRK 1071
            A YLA+ +TLVAPD++ A   AY  G+   RVVT DGKLID +G M+GGG S ++G M+I      +A +SA       ++     +L  +  +A+  +   R   K   + ++ L    K+L+  IPKL M ++G      +  + +  L+  C+L+   +  LKKL   +     D +G AK+++ L+             L+ GG                            V                     ++E   + A++ +  +  +E+ AFEV++A+E  +     K  +L E ++  E+ K      +  EVD++ Q+    K   E  +K +HW  EL KL+K
Sbjct:  660 AIYLAVGNTLVAPDLEVATRWAYDYGKR-WRVVTVDGKLIDTAGTMSGGGKSVRKGGMKIS-----NARASAKDDEEDDIATTDIMKLEEDVDKAKQYLSECRSSMKKLVDEMRTLQKLIKELEVKIPKLAMEVEGCNTIRSELTKLIPHLRQGCELSDADKDNLKKLLHKVDSCRSDVDGCAKMASKLEKEVARLQKAI---LDAGGPALKSQKATCEKLLEELEALEKSLKSAQVAIGASSXXXXXXXXXXXXAEAQMEECLKSAEEKQQEYELLEKDAFEVMQAYEKVKVIEEEKRIKLEEASQECEELKKAQSSAKCAEVDLAGQMDALKKQFRECASKKQHWEQELAKLQK 1006          
BLAST of mRNA_Ecto-sp13_S_contig10423.406.1 vs. uniprot
Match: A0A7S2JYQ7_9STRA (Structural maintenance of chromosomes protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JYQ7_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 6.940e-13
Identity = 92/367 (25.07%), Postives = 153/367 (41.69%), Query Frame = 1
Query:   13 AFYLALRDTLVAPDMKTAMAAAYQNGRTVHRVVTADGKLIDRSGAMTGGGNSTKRGAMRIIGRAGGSAASSAGAXXAGIVSAARAEELAVEARRAEDAVKAARLKKKDAEECLKKLHARSKQLQTLIPKLEMRLQGVGASEEQYREQMEALQAQCKLTPEAEAQLKKLTKDLTKDENGLAKVSASLDXXXXXXXXXXXXXLEVGGERXXXXXXXXXXXXXXXXXXXXXXXXXTVEGEGERKKGEKVAKDADRKTKELEAVREKAQKAKDGFAGMEEKAFEVLKAFEAAEAEVNTKAEELREIAESYEKAKSLADKIRGVEVDISHQLQEYAKSINENKTKLKHWTGELKKLRKTHQKEAEDWGLEDE 1113
            A +LA+ +TLVAPD++TA   AY+ G+   RVVT DGKLI+ SG M+GGGNS +RG MR+     G+A             A   EEL  +A   ++ +K  R K++     ++ L+          PKL M +     + E+  +++  L+A+C L+ +   +L++L K + K +  +A  +                 L+ GG +                          V     RK  EK                                A+ V++A+E A+     K +EL  +             ++G+EVD+  Q ++  + + +N+ +  HW  EL KLR    ++ E    +DE
Sbjct:  649 ALFLAIGNTLVAPDLETATRWAYEYGKR-WRVVTMDGKLIETSGTMSGGGNSVRRGGMRLRNSKQGTADHIPCVNNQ--EDADNVEELDAQANAMQEKLKNVREKRRALANEIRDLNXXXXXXXXXXPKLSMEIASCDTTREELTKRIPELRAECVLSRDDTIKLERLNKKVEKCKLDMASCTMQASKLEAEVASIQKSILDAGGNKLKRQKKMCKNALSNLDEGNKELNEAKVAISSSRKASEKAETMVKXXXXXXXXXXXXXXXXXXXXXXXXXDAYAVMEAYETAKELEMAKQKELETVXXXXXXXXXXXXXMKGIEVDLVAQFEDLDRQVKDNEKRAFHWEHELAKLRTAENQDDEFDASDDE 1012          
BLAST of mRNA_Ecto-sp13_S_contig10423.406.1 vs. uniprot
Match: A0A8H7W210_9FUNG (Structural maintenance of chromosomes protein 4 (Fragment) n=1 Tax=Thamnidium elegans TaxID=101142 RepID=A0A8H7W210_9FUNG)

HSP 1 Score: 74.3 bits (181), Expect = 2.010e-10
Identity = 67/194 (34.54%), Postives = 99/194 (51.03%), Query Frame = 1
Query:    1 RFRTAFYLALRDTLVAPDMKTAMAAAYQNGRTVHRVVTADGKLIDRSGAMTGGGNSTKRGAMRIIGRAGGSAASSAGAXXAGIVSAARAEELAVEARRAEDAVKAARLKKKDAEECLKKLHARSKQLQTLIPKLEMRLQGVGASEEQYREQMEALQAQCKLTP---EAEAQLKKLTKDLTKDENGLAKVSASLD 573
            +F  AFY  L+DTLVA DMK A   AY  GRT  RVVT DGKLI++SGAMTGGGN   RGAM  + +  G             VSA    EL  E    E   + A   K+  E  L++      +L+  + K +M +  + +  E  + ++  L+ Q K  P   + +A++K+  +DL  +   L K ++ ++
Sbjct:  673 KFLPAFYSVLQDTLVANDMKQANHIAY--GRTRWRVVTMDGKLIEKSGAMTGGGNRQMRGAMSSMFKDDG-------------VSAEVVAELEAERDALERDYRIASNDKRTTETALRRKKEHLPKLEVALEKNQMDVNSLNSQLEDEKTRLAQLETQTKPKPADIQRQAEIKQEIEDLEAEMKQLKKQTSEIE 851          
BLAST of mRNA_Ecto-sp13_S_contig10423.406.1 vs. uniprot
Match: A0A7S2PWX0_9STRA (Structural maintenance of chromosomes protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PWX0_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 2.030e-10
Identity = 60/188 (31.91%), Postives = 109/188 (57.98%), Query Frame = 1
Query:   13 AFYLALRDTLVAPDMKTAMAAAYQNGRTVHRVVTADGKLIDRSGAMTGGGNSTKRGAMRII-GRAGGSAASSAGAXXAGIVSAARAEELAVEARRAEDAVKAARLKKKDAEECLKKLHARSKQLQTLIPKLEMRLQGVGASEEQYREQMEALQAQCKLTPEAEAQLKKLTKDLTKDENGLAKVSASLD 573
            A YLA+ +TLVAPD++TA   AY+ G+   RVVT DGKLI+ SG M+GGG S ++G M++  G+ G      A +      S    ++L  +A  A++ +K+ R  +++  + ++ L+ R K L   IP+L+M + G   S E+  +++ AL+ +  L+   + + ++L + + K ++ +A   +S +
Sbjct:  659 ALYLAVGNTLVAPDLETATRWAYEYGKR-WRVVTLDGKLIETSGTMSGGGKSVQKGKMKLSNGKKG------AKSNPMEEFSTEDCKKLEEQANAAQNELKSCRTLRRELTDEIRSLNKRIKALSVKIPQLQMEIAGFDTSREELTKRLPALREESTLSDADQEKKEELVELVEKCKSEMASCVSSCE 839          
BLAST of mRNA_Ecto-sp13_S_contig10423.406.1 vs. uniprot
Match: A0A482S0K4_9ARCH (SMC hinge domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S0K4_9ARCH)

HSP 1 Score: 73.2 bits (178), Expect = 3.480e-10
Identity = 68/202 (33.66%), Postives = 104/202 (51.49%), Query Frame = 1
Query:    7 RTAFYLALRDTLVAPDMKTAMAAAYQNGRTVHRVVTADGKLIDRSGAMTGGGNSTKRGAMRIIGRAGGSAASSAGAXXAGIVSAARAEELAVEARRAEDAVKAARLKKKDAEECLKKLHARSKQLQTLIPKLEMRLQ-----------GVGASEEQYREQ---MEALQAQCKLTPEAEAQLKKLTKDLTKDENGLAKVSASL 570
            R AFY+AL +TLVA D+ +A+A AY N RT +RVVT  G+LID SGAM+GGGN  K+G +++   +  S  SS     A   +  R   +      +ED ++    +    +  L ++H +       I KL+  ++             G  +E+ REQ   + +LQ +  +T E E +L KLTK L + E  +A  S +L
Sbjct:  353 RAAFYMALSNTLVAADLDSAVAVAY-NSRTAYRVVTLQGQLIDTSGAMSGGGNEVKKGLLKLTIESS-SNKSSKNKSVAAACTKTRDSHVV-----SEDVIRQQEQQLHGLQAGLNQIHGKISVTDMDIKKLQASIKQXXXXXXXXXXXXGHKQEKLREQQTRIASLQTESTMTKEEERELAKLTKQLEQLEQQIAVSSPNL 547          
BLAST of mRNA_Ecto-sp13_S_contig10423.406.1 vs. uniprot
Match: A0A2C5ZIF2_9HYPO (Structural maintenance of chromosomes protein n=2 Tax=Ophiocordyceps TaxID=474995 RepID=A0A2C5ZIF2_9HYPO)

HSP 1 Score: 72.8 bits (177), Expect = 6.430e-10
Identity = 100/361 (27.70%), Postives = 160/361 (44.32%), Query Frame = 1
Query:    4 FRTAFYLALRDTLVAPDMKTAMAAAYQNGRTVHRVVTADGKLIDRSGAMTGGGNSTKRGAMRIIGRAGGSAASSAGAXXAGIVSAARAEELAVEARRAEDAVKAARLKKKDAEECLKKLHARSKQLQTLIPKLEMRLQGVGASEEQYREQMEALQAQC-----KLTPEAE--AQLKKLTKDLTKDENGLAKVSASLDXXXXXXXXXXXXXLEVGGERXXXXXXXXXXXXXXXXXXXXXXXXXTVEGEGERKKGEKVAKDADRKTKELEAVREKAQKAKDGFAGMEEKAFEVLKAFEAAEAEVNTKAEELREIAESYEKAKSLADKIRGVEVDISHQLQEYAKSINENKTKLKHWTGELKKL 1065
            FR AFY A++DTLVA D+  A   AY  G    RVVT  G+LID+SG M+GGG++ K+G M                    +V+    E +A    + E  + A   K ++ +E  ++   R K+L+  IP+L+ ++Q +G   E     M  +Q +      +  P A+   +LK L K++ K             XXXXXXXX     +EVGGER                          V      K+  K+AKD    + E +A  +  +K +       E+  E+    +  E  +  K EEL              ++ R VE+++ ++L+E  K++ EN+ + ++W  +L KL
Sbjct:  821 FRPAFYHAMQDTLVAKDLAQANRIAY--GAKRWRVVTLQGELIDKSGTMSGGGSTVKKGLMSSK-----------------LVADTSKEAVA----KLEVDLDAWETKFREFQEYQRECEGRLKELREQIPQLDTKMQKLGLEVESATRNMADVQRRIGDVSKEHQPSADDSRRLKTLQKEVAKLNXXXXXXXXXXXXXXXXXXXLQDAIMEVGGERLQAQRAKVDALKGETVSHNEETSNAEVRRAKAEKQMAKLAKDVXXASSERDAAADDLEKLEVDMGSQGERVEELKTLVQETEEGLVAKKEELAXXXXXXXXXXXXLNESRAVEIEMRNKLEENQKALAENEKRHRYWNDKLSKL 1158          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10423.406.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQ01_ECTSI2.020e-17191.16Structural maintenance of chromosomes protein n=2 ... [more]
A0A835YML7_9STRA5.510e-2941.96Structural maintenance of chromosomes protein n=1 ... [more]
F0YFI0_AURAN1.420e-1527.37Structural maintenance of chromosomes protein 4 n=... [more]
A0A1E7EQ09_9STRA1.690e-1426.27Structural maintenance of chromosomes protein n=1 ... [more]
A0A1Z5JL04_FISSO3.930e-1326.12Structural maintenance of chromosomes protein n=2 ... [more]
A0A7S2JYQ7_9STRA6.940e-1325.07Structural maintenance of chromosomes protein n=1 ... [more]
A0A8H7W210_9FUNG2.010e-1034.54Structural maintenance of chromosomes protein 4 (F... [more]
A0A7S2PWX0_9STRA2.030e-1031.91Structural maintenance of chromosomes protein n=1 ... [more]
A0A482S0K4_9ARCH3.480e-1033.66SMC hinge domain-containing protein n=1 Tax=archae... [more]
A0A2C5ZIF2_9HYPO6.430e-1027.70Structural maintenance of chromosomes protein n=2 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10423contigEcto-sp13_S_contig10423:724..5606 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score529.3
Seed ortholog evalue1.7e-147
Seed eggNOG ortholog2880.D8LQ01
Preferred nameSMC4
Model size1293
KEGG koko:K06675
KEGG Pathwayko04111,map04111
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000012,GO:0000070,GO:0000166,GO:0000217,GO:0000228,GO:0000278,GO:0000280,GO:0000775,GO:0000785,GO:0000790,GO:0000793,GO:0000794,GO:0000796,GO:0000798,GO:0000799,GO:0000819,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003680,GO:0003682,GO:0003690,GO:0003697,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006323,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007064,GO:0007076,GO:0007127,GO:0007129,GO:0007130,GO:0007275,GO:0007399,GO:0007422,GO:0008094,GO:0008144,GO:0008150,GO:0008152,GO:0008278,GO:0009790,GO:0009791,GO:0009793,GO:0009987,GO:0010032,GO:0010154,GO:0015616,GO:0016043,GO:0016462,GO:0016604,GO:0016607,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022402,GO:0022414,GO:0022607,GO:0030261,GO:0030554,GO:0030892,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033554,GO:0034641,GO:0034990,GO:0035639,GO:0036094,GO:0042623,GO:0042802,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044815,GO:0045132,GO:0045143,GO:0046483,GO:0046982,GO:0046983,GO:0048285,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0050896,GO:0051276,GO:0051304,GO:0051307,GO:0051321,GO:0051383,GO:0051716,GO:0061458,GO:0061982,GO:0070013,GO:0070058,GO:0070192,GO:0070193,GO:0070550,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0097367,GO:0098687,GO:0098813,GO:0140013,GO:0140014,GO:0140097,GO:1901265,GO:1901360,GO:1901363,GO:1903046,GO:1903047,GO:1990837
Exons8
EggNOG free text desc.chromosome condensation
EggNOG OGsCOG1196@1,KOG0996@2759
Ec32 ortholog descriptionP-loop containing nucleoside triphosphate hydrolase
Ec32 orthologEc-15_001470.1
Cds size1293
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10423.406.1prot_Ecto-sp13_S_contig10423.406.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10423 724..5606 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462530.0848126-CDS-Ecto-sp13_S_contig10423:723..10081681462530.0848126-CDS-Ecto-sp13_S_contig10423:723..1008Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10423 724..1008 -
1681462530.0949662-CDS-Ecto-sp13_S_contig10423:1537..16931681462530.0949662-CDS-Ecto-sp13_S_contig10423:1537..1693Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10423 1538..1693 -
1681462530.1030548-CDS-Ecto-sp13_S_contig10423:2255..24361681462530.1030548-CDS-Ecto-sp13_S_contig10423:2255..2436Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10423 2256..2436 -
1681462530.1111305-CDS-Ecto-sp13_S_contig10423:3309..34251681462530.1111305-CDS-Ecto-sp13_S_contig10423:3309..3425Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10423 3310..3425 -
1681462530.1191819-CDS-Ecto-sp13_S_contig10423:4075..41621681462530.1191819-CDS-Ecto-sp13_S_contig10423:4075..4162Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10423 4076..4162 -
1681462530.1271465-CDS-Ecto-sp13_S_contig10423:4501..45851681462530.1271465-CDS-Ecto-sp13_S_contig10423:4501..4585Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10423 4502..4585 -
1681462530.1350634-CDS-Ecto-sp13_S_contig10423:4710..48921681462530.1350634-CDS-Ecto-sp13_S_contig10423:4710..4892Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10423 4711..4892 -
1681462530.1430216-CDS-Ecto-sp13_S_contig10423:5404..56061681462530.1430216-CDS-Ecto-sp13_S_contig10423:5404..5606Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10423 5405..5606 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10423.406.1

>prot_Ecto-sp13_S_contig10423.406.1 ID=prot_Ecto-sp13_S_contig10423.406.1|Name=mRNA_Ecto-sp13_S_contig10423.406.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=431bp
RFRTAFYLALRDTLVAPDMKTAMAAAYQNGRTVHRVVTADGKLIDRSGAM
TGGGNSTKRGAMRIIGRAGGSAASSAGAGGAGIVSAARAEELAVEARRAE
DAVKAARLKKKDAEECLKKLHARSKQLQTLIPKLEMRLQGVGASEEQYRE
QMEALQAQCKLTPEAEAQLKKLTKDLTKDENGLAKVSASLDKAEAAVKAL
QTAILEVGGERLKKAVKRADAASKALDEASDALNRATVEGEGERKKGEKV
AKDADRKTKELEAVREKAQKAKDGFAGMEEKAFEVLKAFEAAEAEVNTKA
EELREIAESYEKAKSLADKIRGVEVDISHQLQEYAKSINENKTKLKHWTG
ELKKLRKTHQKEAEDWGLEDEDEHGVSDDDDDESSEDERGEGVTDEGRGD
GGVEESKGGGDDDDDEEEEEEEEESEVSYF*
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mRNA from alignment at Ecto-sp13_S_contig10423:724..5606-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10423.406.1 ID=mRNA_Ecto-sp13_S_contig10423.406.1|Name=mRNA_Ecto-sp13_S_contig10423.406.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4883bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10423:724..5606- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGTTCCGGACTGCGTTCTACTTGGCTCTCCGAGACACCCTTGTTGCTCC GGACATGAAGACGGCCATGGCGGCCGCCTACCAGAACGGTCGCACCGTTC ACCGCGTCGTGACTGCGGACGGCAAGCTGATCGACCGCTCCGGTGCCATG ACTGGGGGAGGAAACTCTACCAAGCGCGGCGCCATGCGGATCATTGGGCG GGGTGAGAGGGGGGTAGTAAACGCATGCAGTAGTCGGTAGACCATTGACC CCGCATCCCTACAAAAGGGGGGGCGCACTCTTACGTTTTTCATGCCTTTG CGGTTAGACCATTGGCTACGCGTCCTCGAGAAGACGGAGCACTGTTCCCA CAGGACGGACCACCGATGGCCAGTTGTTCCTTCCTACTTTGCCGAAGGTG GCTAAAAAATGTCGTCCCTAGTCTATCTATCCTACCAATATCGCTTCCCG CCTGCGGGGGTGCGTACTCATTGCCGTGCATGCCGTAGTCGTTAGACCAT TGACGCTGCCTACAATGCCGGGAAGGTGGCGGAGTGATTGTTTTTTGTAC GCGGGTCCCGCTTACGAAACGATTTGAAGACACTGATGTGGCTCGTCACA CGTAAAAAATCAACGTCGAACCTTTTTCTTTTCAAGTTCTTTCCTCCCCA ATCCTCCCTGTTGTTCTCTCCTCCCTATTCCCCCCTGTTCTTTCCTCCCT GTTGTTGCATGGAGCAGGCGGCAGCGCGGCGTCCAGCGCTGGTGCAGGTG GTGCCGGAATCGTTAGCGCGGCGAGGGCGGAGGAGCTGGCCGTCGAGGCT AGGAGGGCGGAGGATGCCGTGAAGGCCGCTAGGCTCAAGAAGAAGGACGC GGAGGAATGCCTCAAGAAGCTGCACGCCAGGAGCAAGCAGCTACAGGTGT GTGCGTGTGTGTGTGTGTGTGTGTGCGTGTTTTTCATCGTTTGCGTGACC GCGCTAACCGGTACTAACCGGCTCGTAACGATTAGGAAGTACATCGGTCG GCCTTTTACTTTTTGTGGCAGACTCTTATCCCAAAGCTGGAGATGCGGCT GCAGGGCGTTGGGGCGAGCGAGGAGCAGTACCGCGAGCAGATGGAAGCTC TGCAGGTGGGGTTTGGCTGCTTCTTTCATCAGCTGTTGCTGTTGCTTGTT ACTGTTTTGTGTTCGAGTTTTTTTTGTAGAAAAATATTACATGGAATTTT CGCTAGCCAACCACGCGTAAAATGCAGGAGACACACTTTTTTGTTGTTTT TGTTGTCGTTGCTTATGTTGTTGTCTCTGTTGCATGTACGTGCTGGCCTA TTTTCTTCGCCCTTTGGTAATGCCTGGCACGTTGAGTTGTGGTATGCATG GTACAATTTATTGTTGTTTCAAGGCGACGGTGTTTTCGTGTTCTCCCGCC TCCCGCACCCCCTTTTTCTTCCCTCCCGAACCTAAAACAACCAGGCTCAG TGCAAGCTCACCCCCGAGGCTGAGGCCCAGCTGAAGAAACTCACCAAGGA CCTCACGAAAGACGAGAACGGCCTTGCCAAGGTATGTATGCGTCTAGCGT GTTGGCCTCGAGATTGCTGCTTTCCGCGTGAGCGTATGCAGTGGTCCCGC TCCATGTGGTGGTTGATTTTTTTTTTTTTGCCTTCATTTCAAATCAACGC TTGCAGGACTTGTGCCGTCTACGCCGACCCGTGGTCATAGAAGAGGGTTT ACCCCTACCCACCCCTCTTGCGGTACTTTGGCTTCGATATCTAATGCGAG AAGAGTACAGCACTCTCTTCCCTCTGTGAACACTCGAACTACACAGCGCT TTCCACCAACACCAGGAAGGCAAGCGAGAGAAAAGCTCACTTTGCAAGAT TTGATTGTGTTTTTTTTTTTGTTATGTCCGGGATAAGCCTCGAGTGTAAA TTGGTGAGAGGTGGTGTATGTACTCCCCGACATTAAAAACTAAAAGCACG GGACGATCAGATAACTCCCCGGTTCTGAAGGTCTGCCACGCACGCCATGA CTGCTTTACACACTGCGCTATCGGAAATCCAACAAGTTTATTCTGTGGTC AGTATAAACCGAACAGCGGCGGCCAAGAGTATCATGACCCATGAGGTTCG TTGTATGTGGCGGTCAATCGTTTCTTTTTTCTTGTTTGTTTCATTTTTTT TATTGCTGCTGTGTTTGTTGTGTGTATACAGGTGTCTGCGTCGCTTGACA AGGCGGAGGCGGCGGTAAAGGCGCTCCAGACAGCCATCCTGGAGGTCGGC GGGGAGAGGCTGAAGAAGGCCGTCAAGAGGGCCGATGCCGCCTCAAAGTG AGAACCTCCACCAAGCTACCTACGACGTATGTTGCTGCAGTTGTTAGCGT TTGTGGTTGTGGTGTTGTTCGTGTTGTTGGCATGCTGTGGTGCTCTTTGG CGGCATTGCGGAGATGTTCTCTTGGATTCGTAGGTGGTGGTGTACTGCGT TCGCGTTTCGTTGAGGAAGGTGTATTTGGAGTTAGCTTTTGGAGGCTGCC GTTCGACTCGACGCTGGATGAAGGGATCAAGGCGCGGGGGGCGTACAGTA GTCTACGTAGCAAAATTGATCAAGCAAACAAATGGGATAAAGTGCTCAAT CCGTGCTTTGGGGTTAGGGATAGGGTCTGTGTGGCCCCTCCCTATTCTTT TCATAGATGCCCTTCAAATCCTGCGTGGACGGTCCCAGTCGTTCGTACGC ATCTGTACCGCCACCACGCCTGCGTAGGTCCGATCGATCCTCCTTCGGCC TCAGGGCATGTTGTGCCAGTCAACATTGTGGGGTGTTCCTGGCTACCTGG TTGGTTGTGTCCAATACTTTTTTTGGCGTTCTCTCGAATGCTACCCTTTT TCAGTTTCTTTTGTGTGATTTATTAGCACCCAATGTTACTTTTTGTCGCG TGTCGTTTTGTTGTTGTTGTTGTTGTCGTTGTCGGGTCAACGAAAGTTTT TTAATGGTTGCTGTTGCGTACGGTCTGGGCCCGTGACAAGGCAAATGTTG ATGATCTTGTTGGTGTTGGTGTTGGTGGTGCGGTTGCGGTTGCTTTTGTC GTGTCCAATCAGTGTGTTCTGTTGTTGGGATTGTGGTTGTTGTTGTGATT CAGGGATCTGGACGAGGCGAGAGATAACAATAAGTGCATTTCATTGTTTG TTGTCCTCGTGTATGATCAGGGCTCTTGACGAGGCGAGCGATGCTCTCAA CCGCGCGACCGTGGAAGGGGAAGGGGAGCGCAAGAAGGGGGAGAAGGTGG CGAAGGACGCTGATCGCAAGACCAAGGAGCTGGAGGCGGTGCGGGAGAAG GCGCAGAAGGCCAAGGATGGCTTCGCGGGAATGGAAGAGAAGGCCTTCGA GGTATGAACGACTGGCTGTACAGTACAGGTTGCAGGCTGCTGTTGTTGTT GTTGTGGTTGTTGTTGATGATACTGATTGATGCTGGTTGTTGTTATGGTG GTTGTTGCGGTGATGTCGGTGTCGTCATTGTCGGCGACGATGATGATATG GGTATTGCGTTTGGCATTGTCGTAGCTGTTGGTGATGTTGGTAATGTTGT AGTCATTGTTGGTGATGATGATCATGATCAAGTCGGGCTTCGTCGTCGTA GTGTGATTGCTACTGTTACACAATAGCTTCCGTTGGCGGAGCCCCAATAA CGTGGCTCTACCGAGCACAACTGATCTTAGCTTGCATTCCTCCATCGAGC CTTATCCAGCTTGTCTTTCCTTCGGGGTGCCGAAGTGTGTAGATCCCGTT TTTTGTGCACTTGGCCTGTGGCCACGGGAGGCGTCCGCGTCAGTTCGGGG TGGTGCCAATGTTTGAAGGCATCGGCAGCAATAACGACGAAAAAAACCAA CAATGACAACCATGTTCAATGCCAACGACAACCGCAACAACGGCAACCCT TACCCCGCTGCAGGTGTTGAAGGCCTTCGAGGCGGCCGAGGCTGAGGTCA ACACCAAGGCCGAGGAGCTGCGGGAGATCGCGGAGTCCTACGAAAAGGCC AAGTCCCTCGCCGACAAGATCCGAGGGGTGGAGGTCGACATCTCGCACCA GCTGCAGGAGTACGCCAAGGTGCTGCTACTGTGCTTTCGTGTGTGTGTGT GTGTGTTGCGTGTGATACTGTTATTCGCATCGACCGCGCTAACCGGCTGC TCTCAGTGTCGCCAAAATCAGACAATGGCACCAGTCCTGGGGTTGTGGTA CATTACGTCACGTACGGTAGTGGGACATGATCGCTGGTCCGGGCACTCTC TCACCCATGCCTGCTGCGTCGATGCGCCACCGCCGTGTTTGTGCCCCGCA ATCGTTCTTGTTTTTTTTCATTGCGGCAATCAACTCTATGCACCGGCGTG TTGGTGTGTGTGTGTACTCGTCAGATCTATTCCGGCGCCGGTTCACAGGC CTTTCGGCGTATGTTCCTGACGTAGCAGCCGGGCTCACGGGGGAGTTTTA TCATATATTGTTCTTCGTTGTATTGCCCCACCTTTCCCCACCTGCGGTGC TTGCCTTAGTTTATCCGCAATATATATACTTCGAAGTAGTAAATCTTTTC AATTTTCGTACACGTTATTGTGACACGTTGTGTGTGTGCGTCGCTTAGAG CATCAACGAAAACAAGACGAAGCTCAAGCACTGGACCGGGGAGCTCAAGA AGCTGAGGAAGACCCATCAGAAGGAGGCGGAGGACTGGGGTTTGGAGGAT GAGGATGAGCATGGCGTGAGCGACGACGATGATGACGAGAGCAGTGAAGA CGAGAGGGGCGAGGGAGTCACCGACGAGGGCCGGGGGGACGGCGGAGTGG AGGAGAGCAAGGGCGGGGGGGATGATGATGATGATGAGGAGGAGGAGGAG GAGGAGGAGGAGAGCGAGGTGAGTTACTTCTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10423:724..5606-

>mRNA_Ecto-sp13_S_contig10423.406.1 ID=mRNA_Ecto-sp13_S_contig10423.406.1|Name=mRNA_Ecto-sp13_S_contig10423.406.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1293bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10423:724..5606- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGTTCCGGACTGCGTTCTACTTGGCTCTCCGAGACACCCTTGTTGCTCC
GGACATGAAGACGGCCATGGCGGCCGCCTACCAGAACGGTCGCACCGTTC
ACCGCGTCGTGACTGCGGACGGCAAGCTGATCGACCGCTCCGGTGCCATG
ACTGGGGGAGGAAACTCTACCAAGCGCGGCGCCATGCGGATCATTGGGCG
GGCAGGCGGCAGCGCGGCGTCCAGCGCTGGTGCAGGTGGTGCCGGAATCG
TTAGCGCGGCGAGGGCGGAGGAGCTGGCCGTCGAGGCTAGGAGGGCGGAG
GATGCCGTGAAGGCCGCTAGGCTCAAGAAGAAGGACGCGGAGGAATGCCT
CAAGAAGCTGCACGCCAGGAGCAAGCAGCTACAGACTCTTATCCCAAAGC
TGGAGATGCGGCTGCAGGGCGTTGGGGCGAGCGAGGAGCAGTACCGCGAG
CAGATGGAAGCTCTGCAGGCTCAGTGCAAGCTCACCCCCGAGGCTGAGGC
CCAGCTGAAGAAACTCACCAAGGACCTCACGAAAGACGAGAACGGCCTTG
CCAAGGTGTCTGCGTCGCTTGACAAGGCGGAGGCGGCGGTAAAGGCGCTC
CAGACAGCCATCCTGGAGGTCGGCGGGGAGAGGCTGAAGAAGGCCGTCAA
GAGGGCCGATGCCGCCTCAAAGGCTCTTGACGAGGCGAGCGATGCTCTCA
ACCGCGCGACCGTGGAAGGGGAAGGGGAGCGCAAGAAGGGGGAGAAGGTG
GCGAAGGACGCTGATCGCAAGACCAAGGAGCTGGAGGCGGTGCGGGAGAA
GGCGCAGAAGGCCAAGGATGGCTTCGCGGGAATGGAAGAGAAGGCCTTCG
AGGTGTTGAAGGCCTTCGAGGCGGCCGAGGCTGAGGTCAACACCAAGGCC
GAGGAGCTGCGGGAGATCGCGGAGTCCTACGAAAAGGCCAAGTCCCTCGC
CGACAAGATCCGAGGGGTGGAGGTCGACATCTCGCACCAGCTGCAGGAGT
ACGCCAAGAGCATCAACGAAAACAAGACGAAGCTCAAGCACTGGACCGGG
GAGCTCAAGAAGCTGAGGAAGACCCATCAGAAGGAGGCGGAGGACTGGGG
TTTGGAGGATGAGGATGAGCATGGCGTGAGCGACGACGATGATGACGAGA
GCAGTGAAGACGAGAGGGGCGAGGGAGTCACCGACGAGGGCCGGGGGGAC
GGCGGAGTGGAGGAGAGCAAGGGCGGGGGGGATGATGATGATGATGAGGA
GGAGGAGGAGGAGGAGGAGGAGAGCGAGGTGAGTTACTTCTAG
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