mRNA_Ecto-sp13_S_contig10422.405.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10422.405.1
Unique NamemRNA_Ecto-sp13_S_contig10422.405.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig10422.405.1 vs. uniprot
Match: A0A6H5KPF6_9PHAE (EngB-type G domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KPF6_9PHAE)

HSP 1 Score: 278 bits (711), Expect = 1.320e-87
Identity = 147/156 (94.23%), Postives = 151/156 (96.79%), Query Frame = 1
Query:    1 LRVLFHLIDGRHGPVGQDHAIMKLMAELPDTARYVVVLTKADKSDNSVSRQVLEGVVAALREAGVSRTPVVLTSAASKLGRDGMWRYLRLAALDKAMREKEVANKEGKPGEDAESGSEGNDWTRVVRRGEGQEDAGLNSKPLSVVAGVSKVGGAAK 468
            LRVLFHLIDGRHGPVGQDHAIMKLMAELPDTARYVVVLTKADKSDNSVSRQVLEGVVAALREAGVSRTPVVLTSAASKLGRDGMWRYLRLAALDK+MREKEVANKEGK GEDAESGSEGNDWTRVVRRG GQ D  LNS+P+SVVAGVS+VGGAAK
Sbjct:  521 LRVLFHLIDGRHGPVGQDHAIMKLMAELPDTARYVVVLTKADKSDNSVSRQVLEGVVAALREAGVSRTPVVLTSAASKLGRDGMWRYLRLAALDKSMREKEVANKEGKAGEDAESGSEGNDWTRVVRRGVGQADTVLNSRPVSVVAGVSEVGGAAK 676          
BLAST of mRNA_Ecto-sp13_S_contig10422.405.1 vs. uniprot
Match: A0A836C8M6_9STRA (P-loop containing nucleoside triphosphate hydrolase protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8M6_9STRA)

HSP 1 Score: 139 bits (349), Expect = 3.340e-37
Identity = 69/96 (71.88%), Postives = 78/96 (81.25%), Query Frame = 1
Query:    1 LRVLFHLIDGRHGPVGQDHAIMKLMAELPDTARYVVVLTKADKSDNSVSRQVLEGVVAALREAGVSRTPVVLTSAASKLGRDGMWRYLRLAALDKA 288
            LRVLFHL+DGRHGPVG D AIMK MA LP  ARYV+VLTKADK DN+VS  V+   + ALREAGV   PVV+TSA +KLGRD MWRYLRLAALD++
Sbjct:  209 LRVLFHLLDGRHGPVGHDKAIMKEMARLPSYARYVIVLTKADKQDNTVSAGVMAATITALREAGVENAPVVITSAETKLGRDAMWRYLRLAALDRS 304          
BLAST of mRNA_Ecto-sp13_S_contig10422.405.1 vs. uniprot
Match: A0A7S0AGB6_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AGB6_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 1.300e-22
Identity = 52/101 (51.49%), Postives = 67/101 (66.34%), Query Frame = 1
Query:    1 LRVLFHLIDGRHGPVGQDHAIMKLMAE-LPDTARYVVVLTKADKS--------DNSVSRQVLEGVVAALREAGVSRTPVVLTSAASKLGRDGMWRYLRLAA 276
            L++LFHL+D RHGP+ +D  IMK + E LP   +YVVVLTKADK+           V+R  LE V   ++  GV   PV+L+SA +KLGRD +WRYLRLAA
Sbjct:   54 LKILFHLVDARHGPIDEDSRIMKQVGETLPKNVKYVVVLTKADKNVKGPSTKNSGKVARGTLESVRETMKANGVGNAPVLLSSAETKLGRDDLWRYLRLAA 154          
BLAST of mRNA_Ecto-sp13_S_contig10422.405.1 vs. uniprot
Match: A0A7S3V5Y5_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V5Y5_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 6.650e-21
Identity = 53/101 (52.48%), Postives = 69/101 (68.32%), Query Frame = 1
Query:    1 LRVLFHLIDGRHGPVGQDHAIMKLMAEL-PDTARYVVVLTKADKS--------DNSVSRQVLEGVVAALREAGVSRTPVVLTSAASKLGRDGMWRYLRLAA 276
            LRV+FHLIDGRHGP+ +D  IMK + E  P   +YV+VLTKADK+           V ++VL+ +  A +E GV   P++LTSA +KLGRD MWRY+RLAA
Sbjct:  468 LRVIFHLIDGRHGPIDEDFNIMKQVGEQKPKGVQYVIVLTKADKNIKGPNTTNSGKVQKKVLDKLRIAAKENGVGTAPILLTSAETKLGRDDMWRYMRLAA 568          
BLAST of mRNA_Ecto-sp13_S_contig10422.405.1 vs. uniprot
Match: A0A7S3L5M9_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L5M9_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 1.290e-20
Identity = 54/101 (53.47%), Postives = 68/101 (67.33%), Query Frame = 1
Query:    1 LRVLFHLIDGRHGPVGQDHAIMKLMAE-LPDTARYVVVLTKADKS--------DNSVSRQVLEGVVAALREAGVSRTPVVLTSAASKLGRDGMWRYLRLAA 276
            L+VLFHL+DGRHGP  +D AIMK ++E LP   RYVVVLTK+DK+           VS  V+E +   ++  GV   PVV+TSA +KLGRD +W YLRLAA
Sbjct:  501 LKVLFHLVDGRHGPTDEDGAIMKKVSEVLPPYTRYVVVLTKSDKNVKGPNKTNTGKVSIDVMESLGKTMKANGVGSAPVVMTSAETKLGRDAVWNYLRLAA 601          
BLAST of mRNA_Ecto-sp13_S_contig10422.405.1 vs. uniprot
Match: A0A7S1EK19_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1EK19_HEMAN)

HSP 1 Score: 96.7 bits (239), Expect = 1.650e-20
Identity = 52/94 (55.32%), Postives = 66/94 (70.21%), Query Frame = 1
Query:    1 LRVLFHLIDGRHGPVGQDHAIMKLMAELPDTARYVVVLTKADKSDNSVSRQVLEGVVAALREAGVSR-TPVVLTSAASKLGRDGMWRYLRLAAL 279
            L+VLFHL+D RHGP   D  +MKL AE   +A +VVVLTK DK D  V + +++GV  AL E G SR TP++ TSA +K GRD +W YL+LAAL
Sbjct:  275 LKVLFHLVDSRHGPQKDDLELMKLYAETKCSAAFVVVLTKIDKIDGKVRQSIVDGVRDALVECGCSRDTPILQTSAETKRGRDEVWNYLKLAAL 368          
BLAST of mRNA_Ecto-sp13_S_contig10422.405.1 vs. uniprot
Match: A0A6V1PQB5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1PQB5_HETAK)

HSP 1 Score: 91.7 bits (226), Expect = 7.170e-20
Identity = 53/94 (56.38%), Postives = 61/94 (64.89%), Query Frame = 1
Query:    1 LRVLFHLIDGRHGPVGQDHAIMKLMAE-LPDTARYVVVLTKADKSDNSVSRQVLEGVVAALREAGVSRTPVVLTSAASKLGRDGMWRYLRLAAL 279
            L+VLFHLID RHGPV  D  IM +  + L   A+YVVVLTKADK D  V R V   V AAL     S  PVV+TSA S+LGRD MW +L+ A L
Sbjct:  132 LKVLFHLIDSRHGPVETDLEIMGMARDHLAPGAQYVVVLTKADKKDGKVPRAVRAAVAAALEAEYGSGAPVVITSAESRLGRDAMWHHLKRATL 225          
BLAST of mRNA_Ecto-sp13_S_contig10422.405.1 vs. uniprot
Match: A0A1Z5KBG2_FISSO (EngB-type G domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KBG2_FISSO)

HSP 1 Score: 92.0 bits (227), Expect = 9.680e-19
Identity = 50/101 (49.50%), Postives = 67/101 (66.34%), Query Frame = 1
Query:    1 LRVLFHLIDGRHGPVGQDHAIMK-LMAELPDTARYVVVLTKADKS--------DNSVSRQVLEGVVAALREAGVSRTPVVLTSAASKLGRDGMWRYLRLAA 276
            LRVLFHL+D RHGP  +D AIMK +  + P    YV+VLTKADK+           VSR V++ V   + E GV++ PV+L+SA +KLGR+ +W+YLR AA
Sbjct:  470 LRVLFHLVDARHGPTDEDAAIMKQISVDKPPHVHYVIVLTKADKNVKGAAATNTGKVSRDVMKKVQKTMEENGVAKAPVILSSAQTKLGRNEIWKYLRRAA 570          
BLAST of mRNA_Ecto-sp13_S_contig10422.405.1 vs. uniprot
Match: A0A7S1EQV8_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1EQV8_9RHOD)

HSP 1 Score: 90.1 bits (222), Expect = 4.360e-18
Identity = 48/103 (46.60%), Postives = 70/103 (67.96%), Query Frame = 1
Query:    1 LRVLFHLIDGRHGPVGQDHAIMKLMA-----ELPDTARYVVVLTKADKSDNS-VSRQVLEGVVAALREAGV-SRTPVVLTSAASKLGRDGMWRYLRLAALDKA 288
            LRV+FHLIDGRHGP+  D  ++++++     EL  + ++V+VLTK DK D S V   V++  V AL+  G+   TP++ TS+ SK+GRD MWRYLR   +D+A
Sbjct:  426 LRVVFHLIDGRHGPMDDDRLLLEMVSDLKSKELMSSVQFVIVLTKVDKLDKSKVKSGVMQQTVQALKTVGLLESTPIISTSSQSKIGRDEMWRYLRSVTIDEA 528          
BLAST of mRNA_Ecto-sp13_S_contig10422.405.1 vs. uniprot
Match: A0A7R9WZ35_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WZ35_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 6.660e-18
Identity = 47/101 (46.53%), Postives = 64/101 (63.37%), Query Frame = 1
Query:    1 LRVLFHLIDGRHGPVGQDHAIMKLMA-ELPDTARYVVVLTKADKS--------DNSVSRQVLEGVVAALREAGVSRTPVVLTSAASKLGRDGMWRYLRLAA 276
            L+V+FHL+D RHG + +D  IM+ +A  LP    YVVVLTKADK+           VS  +L  V   ++   V  +P++LTSA +KLGRD +WRYL+LAA
Sbjct:  113 LKVVFHLVDARHGLIDEDTTIMQQVATSLPKNVAYVVVLTKADKNVKKSSKHKPGKVSADILTSVRETMKRCKVGNSPIILTSAETKLGRDDIWRYLKLAA 213          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10422.405.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KPF6_9PHAE1.320e-8794.23EngB-type G domain-containing protein n=2 Tax=Ecto... [more]
A0A836C8M6_9STRA3.340e-3771.88P-loop containing nucleoside triphosphate hydrolas... [more]
A0A7S0AGB6_9STRA1.300e-2251.49Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A7S3V5Y5_9STRA6.650e-2152.48Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S3L5M9_9STRA1.290e-2053.47Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A7S1EK19_HEMAN1.650e-2055.32Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A6V1PQB5_HETAK7.170e-2056.38Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A1Z5KBG2_FISSO9.680e-1949.50EngB-type G domain-containing protein n=2 Tax=Fist... [more]
A0A7S1EQV8_9RHOD4.360e-1846.60Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
A0A7R9WZ35_9STRA6.660e-1846.53Hypothetical protein n=1 Tax=Craspedostauros austr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10422contigEcto-sp13_S_contig10422:4136..5852 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score297.0
Seed ortholog evalue5.3e-78
Seed eggNOG ortholog2880.D7G7B8
Model size471
KEGG koko:K03978
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.GTP binding
EggNOG OGsCOG0218@1,KOG2486@2759
Cds size471
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462530.0408697-CDS-Ecto-sp13_S_contig10422:4135..43491681462530.0408697-CDS-Ecto-sp13_S_contig10422:4135..4349Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10422 4136..4349 -
1681462530.0510364-CDS-Ecto-sp13_S_contig10422:5332..54911681462530.0510364-CDS-Ecto-sp13_S_contig10422:5332..5491Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10422 5333..5491 -
1681462530.059389-CDS-Ecto-sp13_S_contig10422:5754..58521681462530.059389-CDS-Ecto-sp13_S_contig10422:5754..5852Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10422 5755..5852 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10422.405.1prot_Ecto-sp13_S_contig10422.405.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10422 4136..5852 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10422.405.1

>prot_Ecto-sp13_S_contig10422.405.1 ID=prot_Ecto-sp13_S_contig10422.405.1|Name=mRNA_Ecto-sp13_S_contig10422.405.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=157bp
LRVLFHLIDGRHGPVGQDHAIMKLMAELPDTARYVVVLTKADKSDNSVSR
QVLEGVVAALREAGVSRTPVVLTSAASKLGRDGMWRYLRLAALDKAMREK
EVANKEGKPGEDAESGSEGNDWTRVVRRGEGQEDAGLNSKPLSVVAGVSK
VGGAAK*
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mRNA from alignment at Ecto-sp13_S_contig10422:4136..5852-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10422.405.1 ID=mRNA_Ecto-sp13_S_contig10422.405.1|Name=mRNA_Ecto-sp13_S_contig10422.405.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1717bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10422:4136..5852- (Ectocarpus species13 EcNAP12_S_4_19m)
CTTCGCGTGCTGTTCCACCTCATCGACGGTCGACATGGTCCCGTGGGTCA GGACCACGCCATCATGAAGCTCATGGCCGAGCTTCCCGACACGGCGAGGT TTGTTCTTGTCGTCGTGGTGGGATGGTGTTGTTGTTTTGCCGGCTTTCTT GACGTTGTTCTTGGTTCTTTTTGCTTCGTTGGCGGTAGTTCTTCTCGCCG CCGTCTTGGTTGTTACTTGTCTTACTCTGTTGCTAAGAATTTTGCTGTTT TAACGTGAGCAGGGACACTTGGTCAACGGCGAATCGAAGACGTAGCGAAA GCAACTGACCACCCCCGCCGCGGCCGTCGCCGCGAATTATGCATAATCGC GTGTCGTGCAGGTACGTTGTGGTCCTGACGAAGGCGGATAAGTCGGACAA CTCGGTGTCGAGGCAGGTGCTGGAGGGGGTCGTGGCCGCGCTCCGAGAGG CAGGGGTCTCCCGCACCCCTGTCGTGCTCACGAGCGCTGCTTCGAAGCTA GGGAGGGACGGGATGTGGAGGTGTGTCAAAAGGCTACGTTGTAACTACTG CAGGCCTACCGGCTTTCGATGACGCATGTGTACGGTTGGACGCCCTGCAC GTTCGCCAGTACCAGTTGAGCCTGTGGCAGGCGAAATCCAACCATCATCG AAGTACTAGTTGGCGCTCACTGGTCAATATTTTTTTCGTTCGTTTTGTAA ATAAAATTTATGGGAAGCCACGCTGAGGCGGCATCGAACCGGGGCCTGCT GGCACTACATGGACGCGATTGCGGGAGCGGTTTTTCGTTCTACCCGCGTC GCTGTGTCGATGCCTGTGCCGCCGCATGGCATGCGTGTGGCATCCATCCC TTGCGGTTCAAGCAGCTCGGCTTGGTTTGCCAGTCCTTTGGTCGGCTTTT GACTTTGGAGAGCCTATGGTCCATCCTGTTACAGAGAAATGGCCTCGAAG TTTCGTTCTGCATGATTTTGTTACGTCATGAGAACCAAGAAAGAGAGTGT TGCCGCGGATCGCGATTGACCAGCCATGCGTTCCACCGCCGCCGCCATTG CACCGCACTTCCACTCGCCGCAGTTTGCCTCCAACTTTGCGTCGAACCGA TACGTCACCGAAACAGGATCCGAAAGCTCAACACCCGATCACTCCTCTGT CCCCTCTTGCACCCCAACGCAATGGAGCACGAGCTAGGCGATCGCGTAGA GAACGAGCGATTCTTTGGTGACGGTGGCTCTGTAAGTAACAGTGCCCAGC CTCAAGTGGGGTGCTCGGTCCACCGTCTCAAGACCGGTGCAGACCAAAAA CGAGCCCGCCCCCTCACGACCACCCCTGCTCACGTTCACCAGCTTTTCTG CAGACGCTGTGTCACGGCAAAACTGTAACCAAGAGTGGAAATGTTCCGGT CTTTGTCGCGAGTTTGCGTGCAGTGTGCTACGAATTATGGATTTGTTTTT GACGACTTTGCGCGTTACAACAAAAGGCCCTGGTACATGCCGCCTGACCG CAGGTACCTCCGACTAGCGGCGCTCGACAAGGCCATGCGAGAAAAAGAAG TGGCGAACAAAGAAGGAAAGCCGGGCGAAGACGCGGAGTCAGGGTCGGAG GGTAACGACTGGACCCGCGTGGTTCGGAGAGGGGAGGGACAGGAAGACGC TGGTTTAAATAGTAAGCCTTTGTCGGTGGTTGCCGGCGTTTCCAAAGTGG GGGGGGCGGCAAAGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10422:4136..5852-

>mRNA_Ecto-sp13_S_contig10422.405.1 ID=mRNA_Ecto-sp13_S_contig10422.405.1|Name=mRNA_Ecto-sp13_S_contig10422.405.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=471bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10422:4136..5852- (Ectocarpus species13 EcNAP12_S_4_19m)
CTTCGCGTGCTGTTCCACCTCATCGACGGTCGACATGGTCCCGTGGGTCA
GGACCACGCCATCATGAAGCTCATGGCCGAGCTTCCCGACACGGCGAGGT
ACGTTGTGGTCCTGACGAAGGCGGATAAGTCGGACAACTCGGTGTCGAGG
CAGGTGCTGGAGGGGGTCGTGGCCGCGCTCCGAGAGGCAGGGGTCTCCCG
CACCCCTGTCGTGCTCACGAGCGCTGCTTCGAAGCTAGGGAGGGACGGGA
TGTGGAGGTACCTCCGACTAGCGGCGCTCGACAAGGCCATGCGAGAAAAA
GAAGTGGCGAACAAAGAAGGAAAGCCGGGCGAAGACGCGGAGTCAGGGTC
GGAGGGTAACGACTGGACCCGCGTGGTTCGGAGAGGGGAGGGACAGGAAG
ACGCTGGTTTAAATAGTAAGCCTTTGTCGGTGGTTGCCGGCGTTTCCAAA
GTGGGGGGGGCGGCAAAGTAG
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