mRNA_Ecto-sp13_S_contig10417.400.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10417.400.1
Unique NamemRNA_Ecto-sp13_S_contig10417.400.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10417.400.1 vs. uniprot
Match: A0A6H5KDH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDH8_9PHAE)

HSP 1 Score: 529 bits (1363), Expect = 3.000e-178
Identity = 315/373 (84.45%), Postives = 319/373 (85.52%), Query Frame = 1 
Query:    1 RCREDSVLVEALPDTLELLLRACMEGLSIAGARAKRSSSSSLSHNVGSDSGSHPPRQDDAPAAAAAIVSELELARAVMSDSVYLAQLAPECFHEVVARVARKAEPERYPLLFPLHLVRGAPDAEEEETEKVFSVSGGISGXXXXXXXXXXSSDGRAHSVEAVNGERATAGGVGQVGRCVGPRWGRWVHPTHLFHDCVSSGKLTTAAWYLPLIRDDVAYDAAQRHVGPNGPLSEEERSRLMPLEMWAVTGEGWPYGLSHALSCVLLLASLSSNQHAFLPEVWLFARKREQSAPXXXXXXXXXXXXXXXXXXXXXXGDGGAGVSDVRWWTMGQGAAIEALLARDKSRRQVAGG-AEATLRRTSSDNRFGRGNVGG 1116
            RCREDSVLVEALPDTLELLLRACMEGLSIAGARAKRSSS+ LSHN                    A VSELELARAVMSDSVYLAQLAPECFHEVVARVARKAEPERYPLLFPLHLV GAPDAEEEETEKV S       XXXXXXXX      RA SVEAVNGERA AGGVGQVGRCVGPRWGRWVHPTHLFHDCVSSGKLTTAAWYLPLIRDDVA+DAAQRHVGPNGPLSEEERSRLMPLEMWAVTG+GWPYGLSHALSCVLLLASLSSNQHA LPEVWLFARKREQSAP      XXXXXXXXXXXXXX    GGAGVSD RWWTMGQGAAIEALLARDK+RRQVAGG AEA LRRTSSDNRF RGNVGG
Sbjct:  166 RCREDSVLVEALPDTLELLLRACMEGLSIAGARAKRSSSA-LSHNXXXXXXXXXXXXXXXXXXXXATVSELELARAVMSDSVYLAQLAPECFHEVVARVARKAEPERYPLLFPLHLVCGAPDAEEEETEKVSSXXXXXXXXXXXXXXX------RARSVEAVNGERAGAGGVGQVGRCVGPRWGRWVHPTHLFHDCVSSGKLTTAAWYLPLIRDDVAFDAAQRHVGPNGPLSEEERSRLMPLEMWAVTGDGWPYGLSHALSCVLLLASLSSNQHALLPEVWLFARKREQSAPHQRHRHXXXXXXXXXXXXXX----GGAGVSDARWWTMGQGAAIEALLARDKTRRQVAGGGAEAMLRRTSSDNRFRRGNVGG 527
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BLAST of mRNA_Ecto-sp13_S_contig10417.400.1 vs. uniprot
Match: D8LB77_ECTSI (SHR-BD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB77_ECTSI)

HSP 1 Score: 467 bits (1201), Expect = 6.040e-146
Identity = 278/310 (89.68%), Postives = 281/310 (90.65%), Query Frame = 1 
Query:  193 AAIVSELELARAVMSDSVYLAQLAPECFHEVVARVARKAEPERYPLLFPLHLVRGAPDAEEEETEKVFSVSGGISGXXXXXXXXXXSSDGRAHSVEAVNGERATAGGVGQVGRCVGPRWGRWVHPTHLFHDCVSSGKLTTAAWYLPLIRDDVAYDAAQRHVGPNGPLSEEERSRLMPLEMWAVTGEGWPYGLSHALSCVLLLASLSSNQHAFLPEVWLFARKREQSAPXXXXXXXXXXXXXXXXXXXXXX--GDGGAGVSDVRWWTMGQGAAIEALLARDKSRRQVAGGAEATLRRTSSDNRFGRGNVGG 1116
            A  V +LELARAVMSDSVYLAQLAPECFHEVVARVARKAEPERYPLLFPLHLVRGAPDAEEE TEK FSV      XXXXXXXXXX    RA S EAVNGERA AGGVGQVGRCVGPRWGRWVHPTHLFH+CVSSGKLTTAAWYLPLIRDDVAYDAAQRHVGPNGPLSEEERSRLMPLEMWAVTGEGWPYGLSHALSCVLLLASLSSNQHAFLPEVWLFARKREQSAP  XXXXXXXXXXXXXXXXXX    GDGGAGVSD RWWTMGQGAAIEALL RD SRRQVAGGAEA LRRTSSDNRF RG+VGG
Sbjct: 2077 AVAVLKLELARAVMSDSVYLAQLAPECFHEVVARVARKAEPERYPLLFPLHLVRGAPDAEEE-TEKFFSVGXXXXXXXXXXXXXXX----RAQSEEAVNGERARAGGVGQVGRCVGPRWGRWVHPTHLFHECVSSGKLTTAAWYLPLIRDDVAYDAAQRHVGPNGPLSEEERSRLMPLEMWAVTGEGWPYGLSHALSCVLLLASLSSNQHAFLPEVWLFARKREQSAPHHXXXXXXXXXXXXXXXXXXSPAAGDGGAGVSDDRWWTMGQGAAIEALLTRDVSRRQVAGGAEAMLRRTSSDNRFRRGSVGG 2381
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BLAST of mRNA_Ecto-sp13_S_contig10417.400.1 vs. uniprot
Match: A0A835YSR2_9STRA (RIC1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSR2_9STRA)

HSP 1 Score: 136 bits (343), Expect = 1.820e-31
Identity = 106/290 (36.55%), Postives = 128/290 (44.14%), Query Frame = 1 
Query:    7 REDSVLVEALPDTLELLLRACMEGLSIAGARAKRSSSSSLSHNVGSDSGSHPPRQDDAPAAAAAIVSELELARAVMSDSVYLAQLAPECFHEVVARVARKAEPERYPLLFPLHLVRGAPDAEEEETEKVFSVSGGISGXXXXXXXXXXSSDGRAHSVEAVNGERATAGGVGQVGRCVGPRWGRWVHPTHLFHDCVSSGKLTTAAWYLPLIRDDVAYDAAQRHVGPNGPLSEEERSRLMPLEMWAVTGEGWPYGLSHALSCVLLLASLSS-NQHAFLPEVWLFARKREQSA 873
            + D+ L EA+PDTLELLLRAC+EG  +A    K                   P  D   A AAA          V+S ++ L  LA  CF EVVARV+RK EP+ Y LLFPL L+ G                GG  G                                               HPTHL H C+  G+L TAAW+LPL+ D     A  R   P+      E   L+P  M  +TG  W +GLSHAL C LLL  L + + HA LPEVWLFA KRE+SA
Sbjct:  790 KRDAALAEAVPDTLELLLRACLEGRHLANEAQKG------------------PAGDATRAQAAA----------VLSGALRLCALARGCFLEVVARVSRKMEPDWYALLFPL-LLGG---------------EGGYEG----------------------------------------------AHPTHLLHACLEQGRLATAAWFLPLVSDHAVSAARSRSAPPH------ELEALLPPPMLPLTGAEWSHGLSHALCCCLLLRCLEAPHTHALLPEVWLFACKRERSA 983
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10417.400.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KDH8_9PHAE3.000e-17884.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LB77_ECTSI6.040e-14689.68SHR-BD domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A835YSR2_9STRA1.820e-3136.55RIC1 domain-containing protein n=1 Tax=Tribonema m... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10417contigEcto-sp13_S_contig10417:3829..5735 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score470.3
Seed ortholog evalue8.3e-130
Seed eggNOG ortholog2880.D8LB77
Model size1118
KEGG koko:K20476
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.Rab guanyl-nucleotide exchange factor activity
EggNOG OGsKOG2006@1,KOG2006@2759
Cds size1116
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462529.7737644-CDS-Ecto-sp13_S_contig10417:3828..41251681462529.7737644-CDS-Ecto-sp13_S_contig10417:3828..4125Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10417 3829..4125 -
1681462529.7834454-CDS-Ecto-sp13_S_contig10417:4508..46591681462529.7834454-CDS-Ecto-sp13_S_contig10417:4508..4659Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10417 4509..4659 -
1681462529.7915108-CDS-Ecto-sp13_S_contig10417:5067..57351681462529.7915108-CDS-Ecto-sp13_S_contig10417:5067..5735Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10417 5068..5735 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10417.400.1prot_Ecto-sp13_S_contig10417.400.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10417 3829..5735 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10417.400.1

>prot_Ecto-sp13_S_contig10417.400.1 ID=prot_Ecto-sp13_S_contig10417.400.1|Name=mRNA_Ecto-sp13_S_contig10417.400.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=372bp
RCREDSVLVEALPDTLELLLRACMEGLSIAGARAKRSSSSSLSHNVGSDS
GSHPPRQDDAPAAAAAIVSELELARAVMSDSVYLAQLAPECFHEVVARVA
RKAEPERYPLLFPLHLVRGAPDAEEEETEKVFSVSGGISGGGGGGGGGGN
SSDGRAHSVEAVNGERATAGGVGQVGRCVGPRWGRWVHPTHLFHDCVSSG
KLTTAAWYLPLIRDDVAYDAAQRHVGPNGPLSEEERSRLMPLEMWAVTGE
GWPYGLSHALSCVLLLASLSSNQHAFLPEVWLFARKREQSAPHHHHSHSH
RRRRSSSAAAPPAAGDGGAGVSDVRWWTMGQGAAIEALLARDKSRRQVAG
GAEATLRRTSSDNRFGRGNVGG
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mRNA from alignment at Ecto-sp13_S_contig10417:3829..5735-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10417.400.1 ID=mRNA_Ecto-sp13_S_contig10417.400.1|Name=mRNA_Ecto-sp13_S_contig10417.400.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1907bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10417:3829..5735- (Ectocarpus species13 EcNAP12_S_4_19m)
CGATGCCGAGAGGATAGCGTGCTAGTCGAGGCCCTCCCGGACACCCTCGA
GCTTCTCTTGCGGGCGTGCATGGAGGGGCTCAGCATAGCGGGAGCGCGGG
CCAAGCGTTCCTCCTCCTCCTCTCTCAGCCACAACGTCGGGTCCGACAGC
GGCAGCCATCCCCCTCGACAGGACGATGCTCCTGCTGCTGCTGCTGCAAT
CGTCTCCGAGCTCGAGCTAGCGCGCGCCGTGATGTCGGACAGCGTGTACC
TCGCCCAGCTGGCGCCCGAGTGCTTCCACGAGGTGGTGGCCCGCGTCGCC
CGCAAGGCCGAGCCCGAGCGGTACCCCCTCCTGTTCCCGCTACACCTCGT
CCGCGGGGCCCCCGATGCAGAGGAGGAGGAGACGGAAAAGGTTTTCAGCG
TTAGCGGCGGCATCAGTGGTGGCGGCGGCGGCGGCGGCGGCGGCGGTAAT
AGCAGCGACGGAAGAGCCCATTCCGTAGAAGCGGTAAATGGCGAGAGGGC
CACGGCGGGAGGGGTGGGGCAGGTTGGTCGCTGTGTTGGGCCGAGGTGGG
GCCGGTGGGTGCACCCGACGCACCTCTTCCACGATTGCGTGTCCTCGGGA
AAGCTGACGACGGCGGCGTGGTACCTGCCCCTCATCCGAGACGACGTCGC
CTACGACGCCGCGCAGAGGTGAGGGATGCGGGAGAGACGCGGGGATCTCG
ATGAGAAGTTTTGGAGGTTTCAGATTAACTTACCACCTTTGGTCGAAAAT
GCGTAGTTTTCTCTGGGAAAGGAGATGGATGTACCCGCTGTGTAGCGGAG
CACTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTTGCATGGGCGCAAGCC
AGGGGCTACACGCCGCGCTACGCTGTCTCGTCTTTTCGTGTAAAACCCTA
ACATGTACCACTTTTTTTTCTCTGTTTTGTAGTTCGTGTAAGAACCGACC
AACATTATTTTTTCTCGCGCCGATGTGCGTTTTTTTCTCCCCGATGTAAA
TGGTCTTGGCGCCACATCATGCACCTTGTCGGCGGTACCGCTTGTCCGTT
GTCTTTGCTTCCCGTGGGGAGAGCAGGCACGTCGGGCCGAACGGCCCCCT
GTCGGAGGAGGAGCGGTCGCGCCTGATGCCGCTGGAGATGTGGGCCGTCA
CGGGGGAAGGGTGGCCCTACGGCCTCAGCCACGCGCTCTCCTGCGTGTTG
CTCCTCGCCAGCCTCTCCTCGAACCAGGTACACAAGGGCATCTGCGTTGC
AAGAGTTGTTTTTTTCGGTGCGTTCTTCTTTTTTTTCTACTACGTTGATC
GTCGTCAAAGTTAAGAGTTTTTAGTTCGACGCCAGGGCCTGGGCACGCGA
AAATTATCGCTGTACCAGGCCCGTGGTACATTTCTATAGTTCCGGTTTTT
GCCGGGGGAGGAAAGAGTGGATGGAGTGCGCTTCTCTCAACGAGATATTA
CCTTTTTCTTGCCGTACGCTGCTTTTGTTTTGTTTGTTTTAAACACGGAC
GTAAGTACATCTTTTTTTTCTCCCTCCCTCTGGTGTTGTTTGTGCGGGCC
GGTCAAAAATTATAACCTACGTCTTTCTCCTCGACTTTTGCCCGCACCAC
CCTCTCGCAGCACGCCTTCCTCCCCGAGGTGTGGCTCTTCGCACGCAAGC
GCGAACAGTCGGCGCCCCACCACCACCACAGCCACAGCCACCGTCGCCGC
CGTAGCAGCAGCGCCGCCGCGCCACCCGCGGCCGGCGACGGCGGCGCTGG
CGTCTCCGACGTCCGTTGGTGGACGATGGGGCAAGGCGCCGCGATCGAGG
CTCTCCTTGCGAGGGACAAGTCGAGGAGACAGGTTGCCGGCGGCGCCGAG
GCGACGCTGAGGCGCACTAGCAGTGACAACCGATTCGGTAGGGGGAACGT
TGGCGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10417:3829..5735-

>mRNA_Ecto-sp13_S_contig10417.400.1 ID=mRNA_Ecto-sp13_S_contig10417.400.1|Name=mRNA_Ecto-sp13_S_contig10417.400.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1116bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10417:3829..5735- (Ectocarpus species13 EcNAP12_S_4_19m)
CGATGCCGAGAGGATAGCGTGCTAGTCGAGGCCCTCCCGGACACCCTCGA
GCTTCTCTTGCGGGCGTGCATGGAGGGGCTCAGCATAGCGGGAGCGCGGG
CCAAGCGTTCCTCCTCCTCCTCTCTCAGCCACAACGTCGGGTCCGACAGC
GGCAGCCATCCCCCTCGACAGGACGATGCTCCTGCTGCTGCTGCTGCAAT
CGTCTCCGAGCTCGAGCTAGCGCGCGCCGTGATGTCGGACAGCGTGTACC
TCGCCCAGCTGGCGCCCGAGTGCTTCCACGAGGTGGTGGCCCGCGTCGCC
CGCAAGGCCGAGCCCGAGCGGTACCCCCTCCTGTTCCCGCTACACCTCGT
CCGCGGGGCCCCCGATGCAGAGGAGGAGGAGACGGAAAAGGTTTTCAGCG
TTAGCGGCGGCATCAGTGGTGGCGGCGGCGGCGGCGGCGGCGGCGGTAAT
AGCAGCGACGGAAGAGCCCATTCCGTAGAAGCGGTAAATGGCGAGAGGGC
CACGGCGGGAGGGGTGGGGCAGGTTGGTCGCTGTGTTGGGCCGAGGTGGG
GCCGGTGGGTGCACCCGACGCACCTCTTCCACGATTGCGTGTCCTCGGGA
AAGCTGACGACGGCGGCGTGGTACCTGCCCCTCATCCGAGACGACGTCGC
CTACGACGCCGCGCAGAGGCACGTCGGGCCGAACGGCCCCCTGTCGGAGG
AGGAGCGGTCGCGCCTGATGCCGCTGGAGATGTGGGCCGTCACGGGGGAA
GGGTGGCCCTACGGCCTCAGCCACGCGCTCTCCTGCGTGTTGCTCCTCGC
CAGCCTCTCCTCGAACCAGCACGCCTTCCTCCCCGAGGTGTGGCTCTTCG
CACGCAAGCGCGAACAGTCGGCGCCCCACCACCACCACAGCCACAGCCAC
CGTCGCCGCCGTAGCAGCAGCGCCGCCGCGCCACCCGCGGCCGGCGACGG
CGGCGCTGGCGTCTCCGACGTCCGTTGGTGGACGATGGGGCAAGGCGCCG
CGATCGAGGCTCTCCTTGCGAGGGACAAGTCGAGGAGACAGGTTGCCGGC
GGCGCCGAGGCGACGCTGAGGCGCACTAGCAGTGACAACCGATTCGGTAG
GGGGAACGTTGGCGGC
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