mRNA_Ecto-sp13_S_contig10412.396.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10412.396.1 vs. uniprot
Match: D8LRC7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRC7_ECTSI) HSP 1 Score: 366 bits (939), Expect = 9.680e-118 Identity = 195/220 (88.64%), Postives = 196/220 (89.09%), Query Frame = 1
Query: 91 DEGEASPPLMTPEQVEEFFKSTMVRLTSPEEREHIKSKVTVDVRIPALLIKIQHEELEKMGVSKEDGQQALNEYTRTTAAGDKEAHQRVEDFTHTC------------------QRTFIEVLRDMEPAEEEMEGKLTPAQIMEFFEACDTLLALPETKESLRKEFLETQVPPDETIVGMQRSMLRTLGFSPDHGVACLNAFSKDFPDDEKLQMRLQQFMR 696
DEGEASPPLMTPEQVEEFFKSTM RLTSPEERE IKSKVTVDVRIPALLIKIQHEELEKMGVSK+DGQQALN YTRTTAAGDKEAHQRVEDFTHT QRTFIEVLRDMEPAEEE E KLTPAQIMEFFEACDTLLALPETKESLRKEFLETQVPPDETIVGMQRSMLRTLGFSPDHGVACLNAFSKDFPDDEKLQMRLQQFMR
Sbjct: 68 DEGEASPPLMTPEQVEEFFKSTMARLTSPEEREDIKSKVTVDVRIPALLIKIQHEELEKMGVSKKDGQQALNGYTRTTAAGDKEAHQRVEDFTHTVYATFTAVARSVTAGDRPDQRTFIEVLRDMEPAEEETEAKLTPAQIMEFFEACDTLLALPETKESLRKEFLETQVPPDETIVGMQRSMLRTLGFSPDHGVACLNAFSKDFPDDEKLQMRLQQFMR 287
BLAST of mRNA_Ecto-sp13_S_contig10412.396.1 vs. uniprot
Match: A0A835ZBF2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBF2_9STRA) HSP 1 Score: 126 bits (317), Expect = 6.140e-28 Identity = 74/183 (40.44%), Postives = 105/183 (57.38%), Query Frame = 1
Query: 91 DEGEASPPLMTPEQVEEFFKSTMVRLTSPEEREHIKSKVTVDVRIPALLIKIQHEELEKMGVSKEDGQQALNEYTRTTAAGDKEAHQRVEDFTHTCQRTFIEVLRDMEPAEEEM--EGKLTPAQIMEFFEACDTLLALPETKESLRKEFLETQVPPDETIVGMQRSMLRTLGFSPDHGVACLN 633
D E S M+ E + FF + L S E RE + + V + R ALL++ Q L+ MGV +E GQQALNE GDKE ++ +F C +T+I + P+ + + EG +T ++MEFF +C +L+ PETK L + F ETQ PP++ I+ MQR ML LG PDHG++CLN
Sbjct: 37 DSVEESDAAMSREDMMSFFDKAIEALKSDELREQVAASVNKENRPDALLMEQQLTMLDDMGVGREKGQQALNEIP-LKHRGDKELVDKMREFESICNQTYITIFTQGRPSADSLRTEGDMTEDEVMEFFNSCISLMGTPETKAKLAQRFAETQEPPNDYIIEMQRDMLACLGIEPDHGISCLN 218
BLAST of mRNA_Ecto-sp13_S_contig10412.396.1 vs. uniprot
Match: A0A7S1RNK7_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1RNK7_ALECA) HSP 1 Score: 99.8 bits (247), Expect = 3.530e-19 Identity = 62/196 (31.63%), Postives = 101/196 (51.53%), Query Frame = 1
Query: 127 EQVEEFFKSTMVRLTSPEEREHIKSKVTVDVRIPALLIKIQHEELEKMGVSKEDGQQALNEYTRTTAAGDKEAHQRVEDFTHTCQRTFIEVLRDMEPAEEEMEGKLTPAQIMEFFEACDTLLALPETKESLRKEFLETQVPPDETIVGMQRSMLRTLGFSPDHGVACLNAFSKDFPDDEKLQMRLQQFMRW*EGQC 714
E + F + + ++ S E RE +K R LI++Q E + +GV ++ G L++ QR DF T QRTFI+ + D +PA+ E + + A ++EFF+AC+T + LPET++ + TQ P++ I+ +QR ML GF +HG A L+ DFP D++L R + + + C
Sbjct: 20 EVITAFLTNGIKKMRSEETREMLKGHE----RPGQKLIEVQRSEWDPLGVDRDMGCGYLDKLEEHYPGNTALIMQR-NDFIFTAQRTFIQAMEDKKPAQMERKKPMPRATMIEFFDACNTKMDLPETRQRFLQHLESTQQVPNQLIIDLQRDMLEVFGFEREHGCAMLSNIGTDFPKDQELHQRFEMWRKKAHSVC 210
BLAST of mRNA_Ecto-sp13_S_contig10412.396.1 vs. uniprot
Match: A0A8J2SUF4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SUF4_9STRA) HSP 1 Score: 99.0 bits (245), Expect = 1.790e-18 Identity = 61/199 (30.65%), Postives = 108/199 (54.27%), Query Frame = 1
Query: 118 MTPEQVEEFFKSTMVRLTSPEEREHIKSKVTVDVRIPALLIKIQHEELEKMGVSKEDGQQALNEYTRTTAAGDKEAHQRVEDFTHTCQRTFIEVLRDMEPAEEEMEGKLTPAQIMEFFEACDTLLALPETKESLRKEFLETQVPPDETIVGMQRSMLRTLGFSPDHGVACLNAFSKDFPDDEKLQMRLQQFMRW*EGQC 714
MT +++ EFF+ + + S E R ++ + + R A L++ Q + + M + ++ G + L R+ A D+E E+F T Q+ FI+ L ++P++ + G I+EFF+AC+T + LP T+E L ++F T+ PP+E I+ +Q+ ML TLGF + LN +DF +D +L +Q + + C
Sbjct: 126 MTRDELAEFFRDGIAMMRSDETRRALRDRNAKE-RPGAQLVERQQLKFDAMNIDRKAGCK-LAGTCRSDYADDEELKGLHEEFMATAQQEFIDALESLKPSKLKRSGVFPKKSILEFFDACNTKMQLPSTRELLAEQFKRTKQPPNELIIKLQKDMLETLGFEREWACGKLNRIGQDFGEDRELVQGMQAWAAMAQQAC 322
BLAST of mRNA_Ecto-sp13_S_contig10412.396.1 vs. uniprot
Match: A0A7S2GNJ1_9DINO (Hypothetical protein n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2GNJ1_9DINO) HSP 1 Score: 90.5 bits (223), Expect = 3.860e-16 Identity = 53/155 (34.19%), Postives = 84/155 (54.19%), Query Frame = 1
Query: 235 LIKIQHEELEKMGVSKEDGQQALNEYTRTTAAGDKEAHQRVEDFTHTCQRTFIEVLRDMEPAEEEMEGKLTPAQIMEFFEACDTLLALPETKESLRKEFLETQVPPDETIVGMQRSMLRTLGFSPDHGVACLNAFSKDFPDDEKLQMRLQQFMRW 699
LI++Q E + M + ++ G Q L++ D R E F T QR+F++ + D P + E + + I+EFF+AC+T + LPET+E L + TQ P++ I+ +QR +L GF +HG A L+ DFP D++L Q+F W
Sbjct: 32 LIELQRAEWDPMNIDRDLGCQFLDKLEEHVPGKDDLIALRSE-FIITAQRSFLQAMEDKRPTKLERKKPMPRETIIEFFDACNTKMDLPETREKLVQTLESTQQVPNQVIIDLQRELLEVFGFEREHGCAMLSNIGSDFPQDQELH---QRFAMW 182
BLAST of mRNA_Ecto-sp13_S_contig10412.396.1 vs. uniprot
Match: A0A813HHN4_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813HHN4_POLGL) HSP 1 Score: 86.3 bits (212), Expect = 1.010e-14 Identity = 51/157 (32.48%), Postives = 87/157 (55.41%), Query Frame = 1
Query: 229 ALLIKIQHEELEKMGVSKEDGQQALNEYTRTTAAGDKEAHQRVEDFTHTCQRTFIEVLRDMEPAEEEMEGKLTPAQIMEFFEACDTLLALPETKESLRKEFLETQVPPDETIVGMQRSMLRTLGFSPDHGVACLNAFSKDFPDDEKLQMRLQQFMRW 699
A L+ +Q + +G ++ G AL++ + G+++ Q DF +T RT+++ + D PAE E + + +EFF+AC+T + +PET + L + T P+E I+ +Q+ ML LGF +H A LN +DFP+D++L Q+F W
Sbjct: 22 AQLVVLQRAGWKTLGFDEDLGCAALDKVDGSDP-GNQQLLQLRADFVYTAMRTYLQAVVDRRPAELECKKPMPREAFIEFFDACNTKMDMPETIQILAEHMAATNKVPNELIINIQKDMLEDLGFERNHACAMLNRIPQDFPNDQELH---QKFETW 174
BLAST of mRNA_Ecto-sp13_S_contig10412.396.1 vs. uniprot
Match: A0A812X6Q3_SYMPI (Hypothetical protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812X6Q3_SYMPI) HSP 1 Score: 58.5 bits (140), Expect = 5.060e-6 Identity = 31/106 (29.25%), Postives = 58/106 (54.72%), Query Frame = 1
Query: 388 FIEVLRDMEPAEEEMEGKLTPAQIMEFFEACDTLLALPETKESLRKEFLETQVPPDETIVGMQRSMLRTLGFSPDHGVACLNAF--SKDFPDDEKLQMRLQQFMRW 699
+++ L+D P + EGK++ ++EF EAC+ + LPE +E LR++ ET P+ + ++ LGF +G +C F S++F D+++ + + RW
Sbjct: 5 YLKCLQDRRPRVLQKEGKMSRDVVLEFLEACNVKMDLPEVQEKLRRKITETGALPETVANEVHDEVMELLGFEVAYGHSCFAEFGASQEFASDKEVA---KAYARW 107 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10412.396.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10412.396.1 >prot_Ecto-sp13_S_contig10412.396.1 ID=prot_Ecto-sp13_S_contig10412.396.1|Name=mRNA_Ecto-sp13_S_contig10412.396.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=214bp MPAAAGGKGGDEGEASPPLMTPEQVEEFFKSTMVRLTSPEEREHIKSKVTback to top mRNA from alignment at Ecto-sp13_S_contig10412:141..5235- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10412.396.1 ID=mRNA_Ecto-sp13_S_contig10412.396.1|Name=mRNA_Ecto-sp13_S_contig10412.396.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5095bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10412:141..5235- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10412:141..5235- >mRNA_Ecto-sp13_S_contig10412.396.1 ID=mRNA_Ecto-sp13_S_contig10412.396.1|Name=mRNA_Ecto-sp13_S_contig10412.396.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=642bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10412:141..5235- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |