mRNA_Ecto-sp13_S_contig1041.392.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1041.392.1 vs. uniprot
Match: A0A6H5K9H1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9H1_9PHAE) HSP 1 Score: 1421 bits (3679), Expect = 0.000e+0 Identity = 856/1113 (76.91%), Postives = 882/1113 (79.25%), Query Frame = 1
Query: 1 ETFYVDPRVEGWGSLSSRAQRLGFKTRGFLGEGVTVCVAASTNPAAGDGGASEDAATATAGAXXXAGQSRGRRLSRIHRMVTQAQTESSAQPGRRKHTSIVDQARQLRATVITGQVFRLWLGRQESKRGAGRGEGGRVPAAAGAAVAVEGKKTADRPLMSRDGGGQQRAAGASRFKSREHPRVVIKDLDGLEPDRVQAFPPELLRKCFLHTDAPPGICPFTPREQASSQEM*THMMMRL*CPQW*DSRRSSSGRRHAEARRTTWQQQW*RCFCSSGGGVAVQRYKSPGALPFECFARFR*RLEARGTVRTHPPCEQAQNPISVVCSPLPLCAWATKQWDREVLKMKKKDAQCVGAKVAARMPPAGSQKPRRGGWCECCEVQYIGTMSEHCASDRHTTAVEADPNFAVLLAFESWTGVEGDSSVASDTAPGRTAAYPTPKAEVAGRDSTAVSPALL----GPATKEEGHAEGGGKEPLLPPIAGSEALQGCGEHNGQNPVAPGTGSPPSGRRQGSALSSSREGKREAPAATKEESILEGGAISPSGLREATGGDGG-SVRASRGSPRLRPKPDQPSGVALRSSEPGAPGECRPAPQRVKRGTCPPDWDSRKDHRRPGSPTADTPATSVASVPSSLTDCRSKQDSSRKSSVCPAESPAHDVQGSDKLPPLSASSSPTSXXXXXRTGRRRGTRGSRGENSXXXXXXXXXXXXDAARRVDLRARCGGTGGMPEAPSTSRSPPKRGGDKPDTDPQQQRLTRLSPPREIGTSPSPASATTSEKEQLDERKIKKRQKRALALLEASAGWAASVRGAAGPCPGDRTARSLATTSGGRSCRKVAHASPPSSGGSTAAQSQRVSKEKSPREDVGSXXXXXXXXXSPSTGRTNGPSRENEEREQPRGADRSGVTVETGSTAE-RDGFGGSTAASVXXXXXXXXXXXXXSQCPPSPAEDAHGRERLPKRARLPPDNGHDYGEEVENIPPSSDRTPPSGEKNSGGTSSSGRNRSSARQAQASSTASRMGLETAAAGQHGSPASSESTRSISRRLGSKFAENQTSCSNAASSARTNRVAVGATSKREPPTSKRARANVTRPCIRSELPLPTRRNCLSSPGSFLTKFS 3321
ETFYVDPRVEG GSLSSRAQRLGFKTRGFLGEGVTVCVAASTNPAAGDGGASEDAATATAGA A Q RGRRLSRIHRM AQTE SAQPGR+ HTSIVDQARQLRATV+TGQ FRLWLGRQESKRGAGRGEGGRVPAAAGAAVAVEGK+TADRPLMSR GGGQQRAAGASRFKSREHPRVVIKDLDGLEPDRVQAFPPELLRKCFLHTDAPPGICPFTPREQAS + RR A+ +S GV V LE ++WDREVLKMKKKDAQCVGAKVAARMPPAGSQKPRRGGWCECCE+QYIGTMSEHCASDRHT AVEADP+FA LLAFESWTG EGDSSV DTAPGRTAAYPTPKAE+AGRDSTAVSPAL GPATK EGH EGGG+EPLLPP+AGSE LQGCGE N QNPVA GTGSPP GRRQGSA+SSSREG+REAPAAT E+SILEGGAISPSGLREATGG S RASRGSPRLRPKPDQPSGVALRSSEPGAPGECRPAP RVKRGTCPPDWDSRKDHR+PGSPTADTPATS ASVPSSLTDCRS QDSS KSSV PAESP +DVQG D LPPLSASSSPT XXXXX ENS DAARR+DLR GGTGG PEAP T SPPK +QQRLTR SPPREIGTSPSPAS TTS++EQ+DER KRALALLEASAGWAASVR AAGPCPGDRT RSL TTSGGR CRKV ASP SS GSTAAQSQRVSKEKSPREDVG XXXX SPST RTNGPSRENEE EQP G DRSGVTVE GS AE RDG GGS A XXXXXXXXXXXXX QCPPSPAEDAHGRER+PKRARLPPDNGH YGEE ENIPPSSDRTPPSGEKNSGGTSSSGRNRSSARQ QASSTASRMGLETAAAGQH SP SSE TRSISRRLGSKFAENQT SNAAS ARTNRVAVGATSK EPPTSKRA+AN TRPC RSELP PTRRNCLSSPGSFLT+FS
Sbjct: 4 ETFYVDPRVEGCGSLSSRAQRLGFKTRGFLGEGVTVCVAASTNPAAGDGGASEDAATATAGAVGGARQLRGRRLSRIHRM---AQTEFSAQPGRQTHTSIVDQARQLRATVVTGQAFRLWLGRQESKRGAGRGEGGRVPAAAGAAVAVEGKETADRPLMSRGGGGQQRAAGASRFKSREHPRVVIKDLDGLEPDRVQAFPPELLRKCFLHTDAPPGICPFTPREQASVR------------------------RRGAQLGS------------NSSNGVFVL-------------------LE--------------------------------EEWDREVLKMKKKDAQCVGAKVAARMPPAGSQKPRRGGWCECCEIQYIGTMSEHCASDRHTAAVEADPHFAALLAFESWTGAEGDSSVVRDTAPGRTAAYPTPKAEMAGRDSTAVSPALSPALPGPATKGEGHEEGGGEEPLLPPVAGSEVLQGCGEDNDQNPVALGTGSPPIGRRQGSAVSSSREGEREAPAATNEDSILEGGAISPSGLREATGGGXXXSARASRGSPRLRPKPDQPSGVALRSSEPGAPGECRPAPPRVKRGTCPPDWDSRKDHRKPGSPTADTPATSAASVPSSLTDCRSNQDSSSKSSVFPAESPVYDVQGPDMLPPLSASSSPTXXXXXXXXXXXXXXXXXXXENSSSVVGGASSSPPDAARRMDLRVGRGGTGGAPEAPGTWPSPPKG---------EQQRLTRPSPPREIGTSPSPASVTTSKQEQIDERXXXXX-KRALALLEASAGWAASVREAAGPCPGDRTPRSLTTTSGGRPCRKVTKASPSSSRGSTAAQSQRVSKEKSPREDVGGXXXX-----SPSTSRTNGPSRENEEGEQPCGTDRSGVTVEAGSNAEARDGCGGS-AXXXXXXXXXXXXXXXXXQCPPSPAEDAHGRERMPKRARLPPDNGHTYGEEFENIPPSSDRTPPSGEKNSGGTSSSGRNRSSARQPQASSTASRMGLETAAAGQHSSPVSSEGTRSISRRLGSKFAENQTRSSNAASRARTNRVAVGATSKIEPPTSKRAQANATRPCTRSELPRPTRRNCLSSPGSFLTEFS 1010
BLAST of mRNA_Ecto-sp13_S_contig1041.392.1 vs. uniprot
Match: D8LB54_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB54_ECTSI) HSP 1 Score: 1259 bits (3258), Expect = 0.000e+0 Identity = 780/1119 (69.71%), Postives = 809/1119 (72.30%), Query Frame = 1
Query: 1 ETFYVDPRVEGWGSLSSRAQRLGFKTRGFLGEGVTVCVAASTNPAAGDGGASEDAATATAGAXXXAGQSRGRRLSRIHRMVTQAQTESSAQPGRRKHTSIVDQARQLRATVITGQVFRLWLGRQESKRGAGRGEGGRVPAAAGAAVAVEGKKTADRPLMSRDGGGQQRAAGASRFKSREHPRVVIKDLDGLEPDRVQAFPPELLRKCFLHTDAPPGICPFTPREQASSQEM*THMMMRL*CPQW*DSRRSSSGRRHAEARRTTWQQQW*RCFCSSGGGVAVQRYKSPGALPFECFARFR*RLEARGTVRTHPPCEQAQNPISVVCSPLPLCAWATKQWDREVLKMKKKDAQCVGAKVAARMPPAGSQKPRRGGWCECCEVQYIGTMSEHCASDRHTTAVEADPNFAVLLAFESWTGVEGDSSVASDTAPGRTAAYPTPKAEVAGRDSTAVSPALLGPATKEEGHAEGGGKEPLLPPIAGSEALQGCGEHNGQNPVAPGTGSPPSGRRQGSALSSSREGKREAPAATKEESILEGGAISPSGLREATGGDGGS------VRASRGSPRLRPKPDQPSGVALRSSEPGAPGECRPAPQRVKRGTCPPDWDSRKDHRRPGSPTADTPATSVASVPSSLTDCRSKQDSSRKSSVCPAESPAHDVQGSDKLPPLSASSSPTSXXXXXRTGRRRGTRGSRGENSXXXXXXXXXXXXDAARRVDLRARCGGTGGMPEAPSTSRSPPKRGGDKPDTDPQQQRLTRLSPPREIGTSPSPASATTSEKEQLDERKIKKRQKRALALLEASAGWAASVRGAAGPCPGDRTARSLATTSGGRSCRKVAHASPPSSGGSTAAQSQRVSKEKSPREDVGSXXXXXXXXXSPSTGRTNGPSRENEEREQPRGADRSGVTVETGSTAE-RDGFGGSTAASVXXXXXXXXXXXXXSQCPPSPAEDAHGRERLPKRARLPPDNGHDYGEEVENIPPS-----SDRTPPSGEKNSGGTSSSGRNRSSARQAQASSTASRMGLETAAAGQHGSPASSESTRSISRRLGSKFAENQTSCSNAASSARTNRVAVGATSKREPPTSKRARANVTRPCIRSELPLPTRRNCLSSPGSFLTKFS 3321
+TFYVDPRVEG SLSSRAQRLGFKTRGFLGEGVT+CVAAST P+AGDGGASE AAT GA GQSRG+RLSRIHRMVTQAQTESSA+PG++ HTSIVDQARQLRA V+TGQ FRLWLGRQESKRGAG+GEGGRV AAGAAVA EGKK ADRPL+SR GGGQQRAAGASRFKSREHPRVVIKDLDGLEPDRVQAFPPELLRKCFL TDAPPGICPFTPREQ WDREVLK+KKKDAQCVGAKVAARMPPAGSQKPRRGGWCECCE+QYIGTMSEHCASDRHT AVEADPNFA LLAFESWTG EGDSSV SDTAPGRTAAYPTPKAEVAGRDSTAVSPAL GPATKE GH EGGG+EPLLPP+AGSEA QGCGEHN QNP+A GTGSPPSGRRQGSA+SSSREG+REAP A KE+S+LEGGAISPSGLREATGG RASRGSPRLRPK +QPSGVAL SSEPGAPGECR AP R RGTCPP+ DSRKDHRRPGSP ADTPATSVASVPSSL DCRSKQDSS KSSVCPAESP HDVQG D+LPPLSASSSPT XXXXX ENS DAARR+DLR +DERK +KRQKRALALLEASAGW ASVRGAAGPCPGDR ARSLATTSGGRSCRKVA ASPPS TAAQSQRVSKEKSPREDVG XXXXXXSPSTGRT GPSRENEE +Q GA RSGV VETGS AE RDG GGS S XXXXXXXXXXXS PAEDAHGRERLPKRARL PDNGH YGEEVENI PS S RTPPS E NSGGTSSSGRNR SARQAQASSTASRMGLETAAAGQH SPASSE TRSISRRLGSKFAENQT SNAAS+ART R AVGA+S EPPTSKRARAN TRPC RSELP PTRR CLSSPGSFLT+FS
Sbjct: 10 DTFYVDPRVEGCDSLSSRAQRLGFKTRGFLGEGVTICVAASTTPSAGDGGASEGAATP--GAAGGVGQSRGQRLSRIHRMVTQAQTESSARPGQQAHTSIVDQARQLRAAVVTGQTFRLWLGRQESKRGAGKGEGGRVTVAAGAAVAGEGKKAADRPLISRRGGGQQRAAGASRFKSREHPRVVIKDLDGLEPDRVQAFPPELLRKCFLLTDAPPGICPFTPREQ----------------------------------------------------------------------------------------------------------------WDREVLKVKKKDAQCVGAKVAARMPPAGSQKPRRGGWCECCEIQYIGTMSEHCASDRHTAAVEADPNFAALLAFESWTGAEGDSSVVSDTAPGRTAAYPTPKAEVAGRDSTAVSPALPGPATKE-GHEEGGGEEPLLPPVAGSEAPQGCGEHNDQNPIALGTGSPPSGRRQGSAVSSSREGEREAPTAKKEDSVLEGGAISPSGLREATGGXXXXXXXXXCARASRGSPRLRPKLEQPSGVALCSSEPGAPGECRQAPPRFMRGTCPPNGDSRKDHRRPGSPVADTPATSVASVPSSLADCRSKQDSSSKSSVCPAESPEHDVQGPDELPPLSASSSPTXXXXXXXXXXXXXXXXXXXENSSSVVGGASSSSPDAARRMDLR-------------------------------------------------------------IDERKKEKRQKRALALLEASAGWVASVRGAAGPCPGDRAARSLATTSGGRSCRKVAKASPPSXXXXTAAQSQRVSKEKSPREDVG----XXXXXXSPSTGRTTGPSRENEEGQQQCGAARSGVAVETGSNAEARDGCGGSAGTSARQXXXXXXXXXXXS-----PAEDAHGRERLPKRARLLPDNGHGYGEEVENIAPSNIAPSSGRTPPSVETNSGGTSSSGRNRCSARQAQASSTASRMGLETAAAGQHSSPASSERTRSISRRLGSKFAENQTGSSNAASTARTKRAAVGASSNIEPPTSKRARANATRPCTRSELPRPTRRKCLSSPGSFLTEFS 943 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1041.392.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1041.392.1 >prot_Ecto-sp13_S_contig1041.392.1 ID=prot_Ecto-sp13_S_contig1041.392.1|Name=mRNA_Ecto-sp13_S_contig1041.392.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=764bp MKKKDAQCVGAKVAARMPPAGSQKPRRGGWCECCEVQYIGTMSEHCASDRback to top mRNA from alignment at Ecto-sp13_S_contig1041:4462..9000+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1041.392.1 ID=mRNA_Ecto-sp13_S_contig1041.392.1|Name=mRNA_Ecto-sp13_S_contig1041.392.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4539bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1041:4462..9000+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1041:4462..9000+ >mRNA_Ecto-sp13_S_contig1041.392.1 ID=mRNA_Ecto-sp13_S_contig1041.392.1|Name=mRNA_Ecto-sp13_S_contig1041.392.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2292bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1041:4462..9000+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |