mRNA_Ecto-sp13_S_contig1040.384.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1040.384.1
Unique NamemRNA_Ecto-sp13_S_contig1040.384.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1040.384.1 vs. uniprot
Match: A0A6H5JSR3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSR3_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 2.290e-25
Identity = 60/83 (72.29%), Postives = 69/83 (83.13%), Query Frame = 1 
Query:   58 LTLGVLRNMASKAIALKIMELFEVPPDGVVSRKVFVDRVVEIFVQRRSLQLTLADYEVILKKVGYVLNAVAAMVVISACLRIL 306
            +TL  LR M SK IALK+MELFEVPP+GVV+RK FVDR V+IFVQRRSLQLTL DYE ILKKVGY+L+ V+A+VV    LRIL
Sbjct:  715 ITLVHLRQMTSKPIALKMMELFEVPPEGVVTRKEFVDRTVDIFVQRRSLQLTLGDYEAILKKVGYLLSVVSAVVVFFVALRIL 797
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BLAST of mRNA_Ecto-sp13_S_contig1040.384.1 vs. uniprot
Match: D7FT72_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT72_ECTSI)

HSP 1 Score: 102 bits (254), Expect = 3.010e-23
Identity = 56/83 (67.47%), Postives = 68/83 (81.93%), Query Frame = 1 
Query:   58 LTLGVLRNMASKAIALKIMELFEVPPDGVVSRKVFVDRVVEIFVQRRSLQLTLADYEVILKKVGYVLNAVAAMVVISACLRIL 306
            +TL  LR + SK IALK+MELFEVPP+GVV+RK FV+R V+IFVQRRSLQLTL DYE IL KVGY+L+ V+A+V+    LRIL
Sbjct:  496 ITLVHLRQITSKPIALKMMELFEVPPEGVVTRKEFVNRTVDIFVQRRSLQLTLGDYEAILTKVGYLLSVVSAVVIFFVALRIL 578
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BLAST of mRNA_Ecto-sp13_S_contig1040.384.1 vs. uniprot
Match: A0A835YTT2_9STRA (EF-hand domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTT2_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 2.110e-7
Identity = 32/82 (39.02%), Postives = 50/82 (60.98%), Query Frame = 1 
Query:   58 LTLGVLRNMASKAIALKIMELFEVPPDGVVSRKVFVDRVVEIFVQRRSLQLTLADYEVILKKVGYVLNAVAAMVVISACLRI 303
            LTL  LR    K +A K +EL +   D  ++   FV  +V ++ +RRSL L+L DYE+IL+K+ Y+L+   A+ ++  CL I
Sbjct:  370 LTLRSLRPAMCKPLARKTLELLDANADATITEDEFVSAIVRVYQKRRSLSLSLQDYEIILRKLSYMLSVGFAVFLLFVCLWI 451
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BLAST of mRNA_Ecto-sp13_S_contig1040.384.1 vs. uniprot
Match: A0A835YNU8_9STRA (Mechanosensitive ion channel-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNU8_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 2.330e-5
Identity = 34/74 (45.95%), Postives = 47/74 (63.51%), Query Frame = 1 
Query:   58 LTLGVLRNMASKAIALKIMELFE----VPPDGVVSRKVFVDRVVEIFVQRRSLQLTLADYEVILKKVGYVLNAV 267
            LTL +LR +  K +A+K M L +    V  D  ++R  F + +V I+ QRRSL LTL DYE IL K+GYV++ V
Sbjct:  840 LTLWMLRPVMIKQLAVKTMALLDGDTAVACDAEITRHKFQNAMVTIYQQRRSLALTLKDYESILIKLGYVISLV 913
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1040.384.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JSR3_9PHAE2.290e-2572.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FT72_ECTSI3.010e-2367.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YTT2_9STRA2.110e-739.02EF-hand domain-containing protein n=1 Tax=Tribonem... [more]
A0A835YNU8_9STRA2.330e-545.95Mechanosensitive ion channel-domain-containing pro... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1040contigEcto-sp13_S_contig1040:8201..9340 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size306
Hectar predicted targeting categoryother localisation
Exons3
Cds size306
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462528.6660635-CDS-Ecto-sp13_S_contig1040:8200..82781681462528.6660635-CDS-Ecto-sp13_S_contig1040:8200..8278Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1040 8201..8278 -
1681462528.6766396-CDS-Ecto-sp13_S_contig1040:8557..86771681462528.6766396-CDS-Ecto-sp13_S_contig1040:8557..8677Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1040 8558..8677 -
1681462528.6928043-CDS-Ecto-sp13_S_contig1040:9232..93401681462528.6928043-CDS-Ecto-sp13_S_contig1040:9232..9340Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1040 9233..9340 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1040.384.1prot_Ecto-sp13_S_contig1040.384.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1040 8201..9340 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1040.384.1

>prot_Ecto-sp13_S_contig1040.384.1 ID=prot_Ecto-sp13_S_contig1040.384.1|Name=mRNA_Ecto-sp13_S_contig1040.384.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=102bp
KGKGVHRAGSRSGGTFDTKLTLGVLRNMASKAIALKIMELFEVPPDGVVS
RKVFVDRVVEIFVQRRSLQLTLADYEVILKKVGYVLNAVAAMVVISACLR
IL
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mRNA from alignment at Ecto-sp13_S_contig1040:8201..9340-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1040.384.1 ID=mRNA_Ecto-sp13_S_contig1040.384.1|Name=mRNA_Ecto-sp13_S_contig1040.384.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1140bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1040:8201..9340- (Ectocarpus species13 EcNAP12_S_4_19m)
AAGGGGAAAGGGGTGCACAGGGCGGGAAGCCGCAGCGGCGGCACTTTCGA
CACAAAACTAACGCTGGGGGTCCTACGCAATATGGCGAGCAAGGCTATAG
CGCTCAAGGTAAACCACATTCATACCCTCAGTTTTCATGCCGTTTGCCGA
GATATGAGAGGTCAATGATCAATCAATGATCCAGACGCGTTAGAGCGAAA
GACTTGCTTCTTTCTCCGTAACAGCAAGGGAACGGGCCGACATTGAATGC
TCGAAACGTGTGTCATGAACCAATGACGGGCACCATGCGCTGTGATAATG
AAGGTTGCATACACAAGGAAAGCAGTACAACCCGATAGCTCACAGGCTAT
AACATTGGTTGCCAGTGAGAATCCTGGAAGCCTTGTTACTCATGTTTGAA
AGGAGAACCATTTAGTCAAAGACGGAGCCTCCCCACATTTGAGAAGTGAC
TCCGTGTGCTTTAATCAAGGGCAGGAAGGCCTTCGATAAAAACCACTCGT
TTTGCTAACGATCTGAATCAGTATCGTTCTCGATTTATCTGACCAATCAA
AGAATGGACACGCAAGGAAGACAACGTTTCCATATAAAGTGGCAGCGGAG
TCCGAGCGTGCTATGCATTCACCAAGTTGCTGTTGTTGTAATCGTTGGAC
TTTTCGGGGGCAGATAATGGAGCTGTTTGAGGTTCCGCCAGACGGCGTGG
TGAGCCGCAAGGTCTTTGTGGATCGCGTCGTAGAGATCTTCGTGCAGCGG
CGGAGCCTGCAGCTCACGCTCGCAGACTACGAGGTGGGTGTGCGAAGACA
CCTTGGGTTTCGCATTGGCTTGGATCGACACGGGAAAGAAAAGTTTTCTC
GTCGTGAGACACAGCTCGATGCGTTTGTTTTATGTTCGTGTATTATTGCA
GACACGTCTGCCGCTCGTTGCGCACGGCGAACGACATTGAAAGCTCGCCG
CAACGCGATGCAACGTTGAACCAGTTGCACTGCGCATAGTTCACCAACTT
GTCGGCGAGTTTTTTTTTATGTTTTCATAGCCTTGCTTCGTTGCCGCACC
TCCGCACACCAGGTAATTTTGAAGAAAGTGGGCTACGTCCTGAACGCGGT
GGCCGCCATGGTCGTTATTTCTGCTTGCCTCCGGATCCTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1040:8201..9340-

>mRNA_Ecto-sp13_S_contig1040.384.1 ID=mRNA_Ecto-sp13_S_contig1040.384.1|Name=mRNA_Ecto-sp13_S_contig1040.384.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=306bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1040:8201..9340- (Ectocarpus species13 EcNAP12_S_4_19m)
AAGGGGAAAGGGGTGCACAGGGCGGGAAGCCGCAGCGGCGGCACTTTCGA
CACAAAACTAACGCTGGGGGTCCTACGCAATATGGCGAGCAAGGCTATAG
CGCTCAAGATAATGGAGCTGTTTGAGGTTCCGCCAGACGGCGTGGTGAGC
CGCAAGGTCTTTGTGGATCGCGTCGTAGAGATCTTCGTGCAGCGGCGGAG
CCTGCAGCTCACGCTCGCAGACTACGAGGTAATTTTGAAGAAAGTGGGCT
ACGTCCTGAACGCGGTGGCCGCCATGGTCGTTATTTCTGCTTGCCTCCGG
ATCCTC
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