mRNA_Ecto-sp13_S_contig10384.371.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10384.371.1
Unique NamemRNA_Ecto-sp13_S_contig10384.371.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10384.371.1 vs. uniprot
Match: D7FSH1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSH1_ECTSI)

HSP 1 Score: 326 bits (836), Expect = 3.630e-107
Identity = 166/167 (99.40%), Postives = 167/167 (100.00%), Query Frame = 3 
Query:  264 QSELGPDRAQALRLSSLKPMTDVDPSSGTGNPPRRRSTYKDALELVTAASMRRVKAELRIRGDMVTLDWLDRFSSRELEQRGNALLESLFAGPMVLIKDPLRDRPKVVEPLKVAQEIMQGREVVAEELITVLKGVPQDHLAMTVSLLNEKWESTGDPESGEPDFRES 764
            +SELGPDRAQALRLSSLKPMTDVDPSSGTGNPPRRRSTYKDALELVTAASMRRVKAELRIRGDMVTLDWLDRFSSRELEQRGNALLESLFAGPMVLIKDPLRDRPKVVEPLKVAQEIMQGREVVAEELITVLKGVPQDHLAMTVSLLNEKWESTGDPESGEPDFRES
Sbjct:  210 ESELGPDRAQALRLSSLKPMTDVDPSSGTGNPPRRRSTYKDALELVTAASMRRVKAELRIRGDMVTLDWLDRFSSRELEQRGNALLESLFAGPMVLIKDPLRDRPKVVEPLKVAQEIMQGREVVAEELITVLKGVPQDHLAMTVSLLNEKWESTGDPESGEPDFRES 376
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BLAST of mRNA_Ecto-sp13_S_contig10384.371.1 vs. uniprot
Match: A0A835YQU4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQU4_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 7.950e-17
Identity = 48/118 (40.68%), Postives = 76/118 (64.41%), Query Frame = 3 
Query:  384 DALELVTAASMRRVKAELRIRGDMVTLDWLDRFSSRELEQ-RGNALLESLFAGPMVLIKDPLR---DRPKVVEPLKVAQEIMQGREVVAEELITVLKGVPQDHLAMTVSLLNEKWEST 725
            + L +VT  ++RR +AELR  G     +WL+RF  +  +  +GNALLES+  GPM++I   +R   D+P+V+EP ++A+ +M  R   AEE+ T+L  VP DHL +  S+L ++W +T
Sbjct:  273 ELLAMVTRVAVRRYEAELRQSGHRYHQNWLERFMLKGGKGLKGNALLESMLNGPMMMINPKVRGNSDKPRVIEPAQIAKGVMLRRATAAEEIRTILGTVPGDHLRLKASMLEQQWSAT 390
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BLAST of mRNA_Ecto-sp13_S_contig10384.371.1 vs. uniprot
Match: A0A836CAL6_9STRA (Alpha-type protein kinase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAL6_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 6.390e-14
Identity = 43/137 (31.39%), Postives = 76/137 (55.47%), Query Frame = 3 
Query:  333 DPSSGTGNPPRRRSTYKDALELVTAASMRRVKAELRIRGDMVTLDWLDRFSSRELEQR-GNALLESLFAGPMVLIKDPLR---DRPKVVEPLKVAQEIMQGREVVAEELITVLKGVPQDHLAMTVSLLNEKWESTGD 731
            DP       P  +  Y++ +ELVT  ++RR + ELR+ G     +WL+RF  +  +   GN L+E++  GPM++I   +    D+PK++ PL++AQ +M+ R   A E  ++L  +P DH  +  + L ++  +  D
Sbjct:  561 DPWGTNAKSPLHQQNYRELIELVTKVALRRYETELRMTGQRYHANWLERFLVKAGDNLVGNDLMEAMLEGPMMMINPKVSGSADKPKMINPLQIAQGVMKRRVAAAAEFRSMLTSIPDDHAQLMRTFLEQQLGAQAD 697
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BLAST of mRNA_Ecto-sp13_S_contig10384.371.1 vs. uniprot
Match: A0A7S2XZC6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZC6_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 1.170e-9
Identity = 38/124 (30.65%), Postives = 66/124 (53.23%), Query Frame = 3 
Query:  360 PRRRSTYKDALELVTAASMRRVKAELRIRGDMVTLDWLDRFSSRELEQRGNALLESLFAGPMVLIKDPLRDRPKVVEPLKVAQEIMQGREVVAEELITVLKGVPQDHLAMTVSLLNEKWESTGD 731
            P R  TY   ++ +T  ++ R K+E RI      ++WL+    +  + +  ALLE +  G M +       +PKV++P+ +AQEIM  RE  AEEL   L+G+  ++  ++++LL    +   D
Sbjct:  251 PYRFETYTILMDKITDIALNRFKSEARILNRSKDINWLEDILKKNGDLKNGALLEKIMDGKMSITSRSGSSKPKVIDPMGIAQEIMSYREEAAEELSKSLEGIQGENARISLTLLENSLKMEMD 374
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BLAST of mRNA_Ecto-sp13_S_contig10384.371.1 vs. uniprot
Match: A0A1Z5JVQ5_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JVQ5_FISSO)

HSP 1 Score: 55.5 bits (132), Expect = 6.020e-5
Identity = 40/133 (30.08%), Postives = 65/133 (48.87%), Query Frame = 3 
Query:  360 PRRRSTYKDALELVTAASMRRVKAELRIRGDM--VTLDWLDRFSSRELEQ---------RGNALLESLFAGPMVLIKDPLRDRPKVVEPLKVAQEIMQGREVVAEELITVLKGVPQDHLAMTVSLLNEKWEST 725
            P+R+  +     L+T  S+ RV  E R  GD   V+ +WL  F    +           R +  LE L   P    K+    R   ++PL++A++I+  R VVAEE  T +  VP+DH+ +   LL+++  S+
Sbjct:  264 PQRQGNFDLLYLLLTQESLHRVLREYRKSGDEREVSYEWLKEFYLSRVSSFFDGHQDYGRADDFLEELLMAPPST-KELSSSRIGFIDPLRIAEDIITMRSVVAEEWQTEIASVPEDHMGLRKKLLSKQMGSS 395
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10384.371.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FSH1_ECTSI3.630e-10799.40Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YQU4_9STRA7.950e-1740.68Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CAL6_9STRA6.390e-1431.39Alpha-type protein kinase domain-containing protei... [more]
A0A7S2XZC6_9STRA1.170e-930.65Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A1Z5JVQ5_FISSO6.020e-530.08Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10384contigEcto-sp13_S_contig10384:497..3142 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score91.7
Seed ortholog evalue4.6e-16
Seed eggNOG ortholog2880.D8LEG6
Model size978
Hectar predicted targeting categoryother localisation
Exons4
EggNOG OGs2E04B@1,2S7JZ@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-04_000870.1
Cds size642
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10384.371.1prot_Ecto-sp13_S_contig10384.371.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10384 622..2931 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462527.4193463-UTR-Ecto-sp13_S_contig10384:496..6211681462527.4193463-UTR-Ecto-sp13_S_contig10384:496..621Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10384 497..621 +
1681462527.4719706-UTR-Ecto-sp13_S_contig10384:2931..31421681462527.4719706-UTR-Ecto-sp13_S_contig10384:2931..3142Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10384 2932..3142 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462527.4344018-CDS-Ecto-sp13_S_contig10384:621..8911681462527.4344018-CDS-Ecto-sp13_S_contig10384:621..891Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10384 622..891 +
1681462527.445017-CDS-Ecto-sp13_S_contig10384:1661..17711681462527.445017-CDS-Ecto-sp13_S_contig10384:1661..1771Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10384 1662..1771 +
1681462527.4552035-CDS-Ecto-sp13_S_contig10384:2268..23831681462527.4552035-CDS-Ecto-sp13_S_contig10384:2268..2383Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10384 2269..2383 +
1681462527.463569-CDS-Ecto-sp13_S_contig10384:2784..29311681462527.463569-CDS-Ecto-sp13_S_contig10384:2784..2931Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10384 2785..2931 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10384.371.1

>prot_Ecto-sp13_S_contig10384.371.1 ID=prot_Ecto-sp13_S_contig10384.371.1|Name=mRNA_Ecto-sp13_S_contig10384.371.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=214bp
MEPCDYLSSIATPFFSSSLLLTLWIEADTLVFMSNRSNFHPLSCCLQSEL
GPDRAQALRLSSLKPMTDVDPSSGTGNPPRRRSTYKDALELVTAASMRRV
KAELRIRGDMVTLDWLDRFSSRELEQRGNALLESLFAGPMVLIKDPLRDR
PKVVEPLKVAQEIMQGREVVAEELITVLKGVPQDHLAMTVSLLNEKWEST
GDPESGEPDFRES*
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mRNA from alignment at Ecto-sp13_S_contig10384:497..3142+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10384.371.1 ID=mRNA_Ecto-sp13_S_contig10384.371.1|Name=mRNA_Ecto-sp13_S_contig10384.371.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2646bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10384:497..3142+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGACGAGCGATTTCGTAGGCAGATTTTAGTTCATACCTATCGGCCATGG
CTTTTTGCCAAGCAGCAGTTGCACGAGCAAAAGCCCCAACAACATCATGC
TCGCATCACACACCTCCAAGCCAACATGGAACCCTGCGACTATCTAAGCA
GCATAGCCACGCCTTTCTTCAGCAGTAGCCTATTGTTGACGCTGTGGATT
GAGGCCGACACCCTTGTCTTCATGTCGAACCGAAGCAATTTTCACCCCCT
GTCGTGCTGCCTACAGTCCGAGCTTGGGCCGGACCGAGCCCAAGCTTTGC
GTCTCTCAAGTTTGAAACCGATGACCGACGTAGATCCCTCTTCCGGTACC
GGCAACCCACCGCGACGACGCTCCACCTACAAGGACGCTTTAGAGGTGAC
TCTTGTTTTAGCCGGCAAGTCTTCCTTAGGTTTGAACGCGTGTTGGGACG
CTCAAACTGGTTCCTGGATTGGTAGCTCAGGAAGGGTTGATGTAAGACTG
TAAAGTGGTTTGTAGATTTGCGTTTGGTTCATCGAGGCTCGATGGGCTCT
GCGAGCCAAGAACACGTCAGCCGTGTGGGCTGTTGAAGCTTGGCAAACGT
CACTGACGGCAGTTGATCCACACCAACTCGTGCTTTGCTTTCATCTCGCA
TCACGCGTTGGTGGCACGACTGCCATGTTCTGATGAGCCCAGTCCAGAGG
CGCCCCTTGTATCTCGATGCTGGTTGGTGGTGGGGCGGCCGCGCTGGCAC
CCATTTGGAAAGCTTTGTCTCGCGCACGCAGGTGTACTTGTCGATGGTGC
CTCGTGTCGATGTCGCCATCGGCAGTGATGTTTCCTCGAGCTGAGAGGCG
GAAGAAATCCGTTTCGTTTTCTAGAAACCTCTCAACCATACCGAGTAGAC
GCATCCTTCTGTGTTGTAAGTGGAAGGCGCGCTTCGATCGTAAGTCTTGT
TCATTGTGCTCGGAATATTGTGCTCTGCTTCCCCCGCTCTGATGCCCTCA
CGCCGAGCAGGCGAACACCGCGTTGTCCCATGATGCCCGTTGGATCGTGT
CCACTGCTAGTCCCCCCTTGTATGTCCCGACTCTGATGCCTATCGGACCC
TTGTACTAATGTAAAACCAACAGCGTCAACGCCGCTGTGTTGGCCCGCGA
AATCACTATGTATAGCTCGTGACGGCGGCGAGCATGAGGCGCGTCAAGGC
GGAGTTGCGAATACGAGGGGATATGGTCACGTTGGATTGGTTGGATCGTT
TCTCGAGCCGCGAACTGGAGCAGAGGTGATGTCCCGTGCCCCGTTGGGTT
ATGTTTGGGCCTTAAACGATAATGGGTGGTTTTGCAGTGCCGAGGAGTAT
GTCACCCCCTCTCCCCCGCACACCAGTAGCGCGCCTATTTTGTCAGTAGT
AATCCAAGGTACCGATATTGACCCCCCATCAGCTTCCTCAATAGATTTTG
GGAAACGGTTTCGAGAAGGAGCAAGTAACCTGGCGTATCGCACGGCTAAA
CAGGTAGATAATCTTGATGGACAGGGCAACGTCCAGAAGGTCCCGTCGCG
TGCTGAGTTCCATAGTTGCCACCCGCTCCCTACTGGATCATGGCATTTCG
CCATATGTGGATGTTCGATGATCTCCCACCAGAAGGAGAGCCGGCATGAC
ATCTCCATGTCGTGCCGTTGTAGCCTACAACGTGCAACCACCAATGTGTG
GTACGTCCTCTTCTCCGACACTCACCACGTTGCTGATGGTTCCCATTGTA
CTTGATGGCTTTGCTCGGTCAGGGGGAACGCCCTCCTCGAGTCTCTGTTC
GCGGGGCCGATGGTGCTCATCAAGGACCCGCTCCGTGATCGACCAAAGGT
TGTCGAGCCGCTTAAGGTTGCCCAGGAGATCATGCAGGTCCGTGATGGGC
TCAACCTTAGTATCAAGTTGACATGGGGCAAGCTGGTGCGCGATTGTGTT
GTTGTTTTTGTACGTGTGGCGGACTGAAGTGAGAACACCTCAGCTTCGTC
CTGTCACGCATTACCCGCCCACACTTTGTCAAGCAGGGGTTTCAAACGCA
TGACTTGGGCCTTGCCTTTTCGTAGAAAACGGAGAGTATGTGCTAGTCGT
GTTTATTCCTTTCTCGATCGTGTCGACTCGTCTCAGTCCGTTCCTGGAGT
ACTGGGATATTTGCGGGCGACATCCCTGTCGCTATTTCGGCAAGCTCCCA
ATAAAGCAGGTTCCGTCCTCGATAATTGCTGCTGCTGCTGCTTCTGCTGC
TGCTGCTGCCGCTGCCGCCGCTGGGATTCCTTGTTCAGGGGAGAGAGGTC
GTAGCCGAAGAGCTCATCACGGTCTTGAAAGGGGTGCCGCAAGATCATCT
TGCGATGACGGTTTCGCTTCTCAACGAGAAGTGGGAATCCACAGGAGATC
CGGAGAGCGGAGAACCGGATTTCCGCGAGAGCTAGGCGCTGGCCTGTTAG
TTAACGGTGTGCTCTTCTTGTGTGATGGGCCGCGAGACCTAATACAGTGT
CGCGGGTGCGATAAAATTTGCCGGACGAAGGAGCAAGACCTCGAGTAGGG
TAGTGCTATACATAATGAGCCAGGGTTTTACGAGCAACAATGGAGTATTA
ACTGCTCGCTGAAACTTGTACATGATATATGTATATCGTATGAGGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10384:497..3142+

>mRNA_Ecto-sp13_S_contig10384.371.1 ID=mRNA_Ecto-sp13_S_contig10384.371.1|Name=mRNA_Ecto-sp13_S_contig10384.371.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=642bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10384:497..3142+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAACCCTGCGACTATCTAAGCAGCATAGCCACGCCTTTCTTCAGCAG
TAGCCTATTGTTGACGCTGTGGATTGAGGCCGACACCCTTGTCTTCATGT
CGAACCGAAGCAATTTTCACCCCCTGTCGTGCTGCCTACAGTCCGAGCTT
GGGCCGGACCGAGCCCAAGCTTTGCGTCTCTCAAGTTTGAAACCGATGAC
CGACGTAGATCCCTCTTCCGGTACCGGCAACCCACCGCGACGACGCTCCA
CCTACAAGGACGCTTTAGAGCTCGTGACGGCGGCGAGCATGAGGCGCGTC
AAGGCGGAGTTGCGAATACGAGGGGATATGGTCACGTTGGATTGGTTGGA
TCGTTTCTCGAGCCGCGAACTGGAGCAGAGGGGGAACGCCCTCCTCGAGT
CTCTGTTCGCGGGGCCGATGGTGCTCATCAAGGACCCGCTCCGTGATCGA
CCAAAGGTTGTCGAGCCGCTTAAGGTTGCCCAGGAGATCATGCAGGGGAG
AGAGGTCGTAGCCGAAGAGCTCATCACGGTCTTGAAAGGGGTGCCGCAAG
ATCATCTTGCGATGACGGTTTCGCTTCTCAACGAGAAGTGGGAATCCACA
GGAGATCCGGAGAGCGGAGAACCGGATTTCCGCGAGAGCTAG
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