mRNA_Ecto-sp13_S_contig10370.363.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10370.363.1
Unique NamemRNA_Ecto-sp13_S_contig10370.363.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig10370.363.1 vs. uniprot
Match: D8LAY6_ECTSI (Nephroretinin 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAY6_ECTSI)

HSP 1 Score: 461 bits (1187), Expect = 2.850e-146
Identity = 229/242 (94.63%), Postives = 230/242 (95.04%), Query Frame = 1
Query:    1 QEVLVKCRVGQFPSRKGFYLLVYDDHYQGSLYETWHVIVQARLRMDVHSLLGQQSPADLIVRGDRYSRNVRAFSSCPAEVSFEPANAFQLVPGAYNRVELRFRPLSTGSRKIHVHLVDLDSMEIVGAWLATATAMPPVITKSYDVELPLGRACHKRIAYSNPWTTTRLFRLASSDPRILRPRYESLEASFFGTKFVAGGGTGFLRLWFAAPEGTNVRKEVFLFVNDSEGQNEECLLICMRGG 726
            QEVLVKCRVGQFPSRKGFYLLVYDDHYQGSLYETWHVIVQARLRMDVHSLLGQQSPADLIVRGDRYSR VRAFSSCPAEVSFEPANAFQLVPGAYNRVELRFRPLSTGSRKIHVHLVD+DSMEIVGAWLATATAMPPVITKSYDVELPLGRACHKRIAYSNPW TTRLFRLASSDPRILRPRYESLE        VAGGGTGFLRLWFAAP GTNVRKE FLFVNDSEGQNEECLLICMRGG
Sbjct: 2808 QEVLVKCRVGQFPSRKGFYLLVYDDHYQGSLYETWHVIVQARLRMDVHSLLGQQSPADLIVRGDRYSRKVRAFSSCPAEVSFEPANAFQLVPGAYNRVELRFRPLSTGSRKIHVHLVDVDSMEIVGAWLATATAMPPVITKSYDVELPLGRACHKRIAYSNPWNTTRLFRLASSDPRILRPRYESLE--------VAGGGTGFLRLWFAAPGGTNVRKEAFLFVNDSEGQNEECLLICMRGG 3041          
BLAST of mRNA_Ecto-sp13_S_contig10370.363.1 vs. uniprot
Match: A0A835YU49_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU49_9STRA)

HSP 1 Score: 280 bits (715), Expect = 7.690e-83
Identity = 138/253 (54.55%), Postives = 174/253 (68.77%), Query Frame = 1
Query:    4 EVLVKCRVGQFPSRKGFYLLVYDDHYQGSLYETWHVIVQARLRMDVHSLLGQQSPADLIVRGDRYSRNVRAFSSCPAEVSFEPANAFQLVPGAYNRVELRFRPLSTGSRKIHVHLVDLDSMEIVGAWLATATAMPPVITKSYDVELPLGRACHKRIAYSNPWTTTRLFRLASSDPRILRPRYESLEASFFGTKF--------------VAGGGTGFLRLWFAAPEGTNVRKEVFLFVNDSEGQNEECLLICMR 720
            E+ +K RVG FPS   FYLL+YDD  +  LYE WHV+V +RLR+DVH+ LGQ S ADL+VRGDRYSR VR F+S PA+  F+P + FQLV GAYNRV++R+RP  TG  KI VH+VD+D+ E+VGAWLATATA+PPV+TK+Y+++LP+G+  HKRIAY+NPW   R FRL SSD  ++ PR+  LE                      VA GGTGF+RLW  AP+      EVFLFVND   QNEE  +  +R
Sbjct: 3038 EIFIKYRVGAFPSAGEFYLLLYDDRDRTRLYEIWHVMVHSRLRLDVHATLGQASAADLVVRGDRYSRRVRCFTSAPADCEFDPPSTFQLVSGAYNRVDMRYRPTRTGGSKIQVHMVDVDTQELVGAWLATATALPPVVTKTYELDLPVGKESHKRIAYANPWLQARAFRLRSSDETVMAPRHGGLEXXXXXXXXXXXXXXXXXXXXXXVAAGGTGFIRLWLHAPDAAG-SAEVFLFVNDENDQNEEYNMDMLR 3289          
BLAST of mRNA_Ecto-sp13_S_contig10370.363.1 vs. uniprot
Match: A0A836CDE8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDE8_9STRA)

HSP 1 Score: 245 bits (625), Expect = 6.800e-79
Identity = 126/234 (53.85%), Postives = 157/234 (67.09%), Query Frame = 1
Query:   19 CRVGQFPSRKGFYLLVYDDHYQGSLYETWHVIVQARLRMDVHSLLGQQSPADLIVRGDRYSRNVRAFSSCPAEVSFEPANAFQLVPGAYNRVELRFRPLSTGSRKIHVHLVDLDSMEIVGAWLATATAMPPVITKSYDVELPLGRACHKRIAYSNPWTTTRLFRLASSDPRILRPRYESLEASFFGTKFVAGGGTGFLRLWFAAPEGTNVRKEVFLFVNDSEGQNEECLLICMR 720
            C  G+F      YLL++DD  +  LYE WHV+V +RLR+DVH+ LGQ S A+L+VRGDRYSR VR FSS P +  F+P   FQLV GAYNRV                H+VD+D+ E+VGAWLATATA+PPV+TK+ +++LP+G+  HKRIAY+NPW+  R FRL SSD  ++ PR+  LEA        A GGTGF+RLW  AP+      EVFLFVND   QNEECLLI MR
Sbjct:    4 CSAGEF------YLLLHDDRDRTRLYEIWHVMVHSRLRLDVHATLGQASAANLVVRGDRYSRRVRCFSSAPGDCEFDPPTTFQLVSGAYNRV----------------HMVDVDTQELVGAWLATATALPPVVTKTNELDLPVGKESHKRIAYANPWSQARAFRLRSSDETVMAPRHGGLEA--------AAGGTGFIRLWLHAPDAAG-SAEVFLFVNDENDQNEECLLIRMR 206          
BLAST of mRNA_Ecto-sp13_S_contig10370.363.1 vs. uniprot
Match: A0A7S2QW27_9STRA (Hypothetical protein n=2 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2QW27_9STRA)

HSP 1 Score: 243 bits (621), Expect = 3.150e-70
Identity = 113/237 (47.68%), Postives = 168/237 (70.89%), Query Frame = 1
Query:    1 QEVLVKCRVGQFPSRKGFYLLVYDDHYQGSLYETWHVIVQARLRMDVHSLLGQQSPADLIVRGDRYSRNVRAFSSCPAEVSFEPANAFQLVPGAYNRVELRFRPLSTGSRKIHVHLVDLDSMEIVGAWLATATAMPPVITKSYDVELPLGRACHKRIAYSNPWTTTRLFRLASSDPRILRPRYESLEASFFGTKFVAGGGTGFLRLWFAAPEGTNVRKEVFLFVNDSEGQNEECLLI 711
            QEVL+K R G+FPS   FY+LVYDDHYQG ++E WHV+VQ+RLR+DV++ +GQ +P++L+++GD+++R V  +SS PAE  F+P+  FQLVPGA+NR  ++FR    GS+KIH+H+VDLD+ E+V AWL T  +  PVITK YDV++P+G  C K+++++N W  TR ++L SSDP +++PR  +++        +     G++RL+F  P      +EV LFVND +  NEE  L+
Sbjct: 2240 QEVLIKYRCGKFPSVGEFYILVYDDHYQGVVHECWHVVVQSRLRLDVNAAVGQSTPSELVIQGDKFARRVMVYSSSPAETFFDPSRPFQLVPGAFNRAAVKFRMKQAGSKKIHIHMVDLDTKELVCAWLVTVNSALPVITKVYDVQVPIGVGCSKKLSFTNQWDRTRRYKLMSSDPAVMKPRNPTVD--------IEPRAIGYMRLYFN-PIDVVGTEEVILFVNDEQDMNEEAFLL 2467          
BLAST of mRNA_Ecto-sp13_S_contig10370.363.1 vs. uniprot
Match: A0A7S2HFZ8_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HFZ8_9STRA)

HSP 1 Score: 223 bits (568), Expect = 5.150e-69
Identity = 113/242 (46.69%), Postives = 154/242 (63.64%), Query Frame = 1
Query:    1 QEVLVKC-RVGQFPSRKGFYLLVYDDHYQGSLYETWHVIVQARLRMDVHSLLGQQSPADLIVRGDRYSRNVRAFSSCPAEVSFEPANAFQLVPGAYNRVELRFRPLST-GSRKIHVHLVDLDSMEIVGAWLATATAMPPVITKSYDVELPLGRACHKRIAYSNPWTTTRLFRLASSDPRILRPRYESLEASFFGTKFVAGGGTGFLRLWFAAPEGTNVRKEVFLFVNDSEGQNEECLLICMR 720
            QE+ +K  ++G FP R  FY+L+YDD Y   L E WHV V +RLR D+ + LGQ SP +L+VRGD Y R V+A+SS P E+ F PA+ F L P  YN++ELR+ P  T G R++HVHLVD+ + E+V AW+ T  A PP ITK Y V++ +G   HK++++ NPW+  RLFRL S+DP ++RP+ + LE       F+    + FLR  FA         EV+L VND E QNEEC  I + 
Sbjct:   63 QELHLKYWKLGAFPFRADFYVLIYDDRYSARLNEIWHVTVASRLRKDIQATLGQASPMELVVRGDGYRRRVKAYSSEPREIKFLPADVFHLAPQQYNKLELRWTPFGTDGMRRVHVHLVDIQTGELVCAWIVTTVATPPAITKDYQVDVAVGEGSHKKVSFDNPWSRHRLFRLRSTDPNVMRPKTDELEIPPRDRAFIKLYISPFLRPGFA---------EVYLLVNDEEDQNEECFRIVIN 295          
BLAST of mRNA_Ecto-sp13_S_contig10370.363.1 vs. uniprot
Match: A0A6G0XXV1_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XXV1_9STRA)

HSP 1 Score: 219 bits (559), Expect = 6.730e-62
Identity = 115/237 (48.52%), Postives = 151/237 (63.71%), Query Frame = 1
Query:    1 QEVLVKCRVGQFPSRKGFYLLVYDDHYQGSLYETWHVIVQARLRMDVHSLLGQQSPADLIVRGDRYSRNVRAFSSCPAEVSFEPANAFQLVPGAYNRVELRFRPLSTGSRKIHVHLVDLDSMEIVGAWLATATAMPPVITKSYDVELPLGRACHKRIAYSNPWTTTRLFRLASSDPRILRPRYESLEASFFGTKFVAGGGTGFLRLWFAAPEGTNVRKEVFLFVNDSEGQNEECLLI 711
            QE+ VK RVG++PS   FYLL+Y+D Y   L+E W + VQA LR+D+ + +GQ    +LI++GD   R VR +SS P EV F P   FQL+P A+NR+EL F  +    ++I V+LVD+DS E+VG+WL   T   PV+TK +DV LPLG    K+I+Y NPW   RLF L SSDP I++PR   L         + G G GFLRL FA P      K+V+LF+ND   QNEECLL+
Sbjct: 3054 QEIFVKYRVGEYPSTGEFYLLLYEDMYHARLFEIWRICVQAMLRLDLQASMGQGVRNELIIKGDTMPRRVRCYSSQPHEVQFNPDRIFQLLPHAFNRIELLFCSMEIRIKQIVVNLVDVDSYELVGSWLLNTTTTEPVVTKVFDVTLPLGVPVLKKISYRNPWDDDRLFILRSSDPSIMKPRERKL--------LLPGYGDGFLRLAFA-PHSIACSKKVYLFINDGSDQNEECLLL 3281          
BLAST of mRNA_Ecto-sp13_S_contig10370.363.1 vs. uniprot
Match: T0RSH2_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0RSH2_SAPDV)

HSP 1 Score: 219 bits (558), Expect = 9.220e-62
Identity = 108/237 (45.57%), Postives = 153/237 (64.56%), Query Frame = 1
Query:    1 QEVLVKCRVGQFPSRKGFYLLVYDDHYQGSLYETWHVIVQARLRMDVHSLLGQQSPADLIVRGDRYSRNVRAFSSCPAEVSFEPANAFQLVPGAYNRVELRFRPLSTGSRKIHVHLVDLDSMEIVGAWLATATAMPPVITKSYDVELPLGRACHKRIAYSNPWTTTRLFRLASSDPRILRPRYESLEASFFGTKFVAGGGTGFLRLWFAAPEGTNVRKEVFLFVNDSEGQNEECLLI 711
            QE+ +K RVG +PS   FYLL+YDD Y   L+E W + +Q+ +R+D+H+ +GQ    +LIV+GD   R V  FSS P E+ F+P+  FQL+P A+NR+E+RF  +   +++I VH+VD+DS ++VGAWL   T   P++TK +DV LP G    K+I+Y NPW   R F L S+DP I++PR   L+        + G G G+LRL FA P      K+V+LF+ND + QNEECLL 
Sbjct: 3386 QEIYIKYRVGDYPSLGVFYLLLYDDMYHARLHEIWRIHIQSMMRLDLHATMGQGVQNELIVKGDAMPRRVSCFSSHPTELQFKPSGIFQLIPHAFNRIEVRFATMQVCAKQIVVHVVDVDSRDLVGAWLLNTTVSEPIVTKVFDVTLPTGVPVLKKISYRNPWDEDRSFVLRSNDPSIMKPREPRLQ--------LQGNGDGYLRLAFA-PHSLPCSKKVYLFINDHQDQNEECLLF 3613          
BLAST of mRNA_Ecto-sp13_S_contig10370.363.1 vs. uniprot
Match: W4H6W9_9STRA (Uncharacterized protein n=11 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H6W9_9STRA)

HSP 1 Score: 218 bits (555), Expect = 2.330e-61
Identity = 109/237 (45.99%), Postives = 155/237 (65.40%), Query Frame = 1
Query:    1 QEVLVKCRVGQFPSRKGFYLLVYDDHYQGSLYETWHVIVQARLRMDVHSLLGQQSPADLIVRGDRYSRNVRAFSSCPAEVSFEPANAFQLVPGAYNRVELRFRPLSTGSRKIHVHLVDLDSMEIVGAWLATATAMPPVITKSYDVELPLGRACHKRIAYSNPWTTTRLFRLASSDPRILRPRYESLEASFFGTKFVAGGGTGFLRLWFAAPEGTNVRKEVFLFVNDSEGQNEECLLI 711
            QE+  K RVG++PS   FYLL+Y+D Y   LYE W + VQ+ LR+D+H+ +GQ    +LI++GD   R VR +SS PA+V F P   FQL+P A+NR+EL +  +  G+ ++ +++VD+DS E++G+WL  A    P++TK +DV LPLG    K+I+Y NPW + R+F L +SDP I++PR  +L  S        GG  GFLRL FA P      K+V+LF+ND   QNEECLL+
Sbjct: 3377 QEIYFKYRVGEYPSSGEFYLLLYEDMYHAVLYEIWRLCVQSMLRLDLHATMGQGVRNELILKGDTMPRRVRCYSSQPAKVHFNPERIFQLLPHAFNRIELLYCSMDVGALQVLINVVDVDSHELIGSWLLNANTSEPLVTKVFDVTLPLGVPVLKKISYRNPWESDRMFVLRTSDPSIMKPREPTLRLS--------GGSDGFLRLAFA-PYSIPCTKKVYLFINDGSDQNEECLLL 3604          
BLAST of mRNA_Ecto-sp13_S_contig10370.363.1 vs. uniprot
Match: A0A7S1XUC6_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XUC6_9STRA)

HSP 1 Score: 217 bits (552), Expect = 5.500e-61
Identity = 115/243 (47.33%), Postives = 155/243 (63.79%), Query Frame = 1
Query:    4 EVLVKCRVGQFPSRKGFYLLVYDDHYQGSLYETWHVIVQARLRMDVHSLLGQQSPADLIVRGDRYSRNVRAFSSCPAEVSFEPANAFQLVPGAYNRVELRFRP--LSTGSRKIHVHLVDLDSMEIVGAWLATATAMPPVITKSYDVELPLGRACHKRIAYSNPWTTTRLFRLASSDPRILRPRYESLEASFFGTKFVAGGGTGFLRLWFAAPE-GTNVRKEVFLFVNDSEGQNEECLLICMRG 723
            EV +K RV  FP    FY+LVY D YQ  L E WHV V ARLR+D+H+  GQ   ADL+VRGD ++R VRA+SS P EVSF+ A  F LV G+YNR+ LR+RP  LS+ +++I VHL+D D+ ++V  W+ATAT   PV+T+++DV++ +     KRI YSNPW+  R F+L SS+P ++RPR   LE        V    +G++RL            +EV LFVND E   EEC L+ +RG
Sbjct: 1322 EVWLKYRVPPFPGTGEFYVLVYRDPYQAQLRELWHVHVNARLRLDLHATAGQAVTADLVVRGDSFTRRVRAYSSLPKEVSFDQAGEFALVAGSYNRIGLRYRPTGLSSVTKRISVHLIDADTQQLVCGWIATATTAAPVVTRTFDVDVTVDDEASKRIPYSNPWSRRRAFKLISSNPGLVRPRSARLE--------VEARASGYIRLALNGDAIDAGAVEEVLLFVNDDEDNTEECFLLRLRG 1556          
BLAST of mRNA_Ecto-sp13_S_contig10370.363.1 vs. uniprot
Match: A0A7S2C1Z8_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C1Z8_9STRA)

HSP 1 Score: 214 bits (546), Expect = 3.580e-60
Identity = 110/242 (45.45%), Postives = 153/242 (63.22%), Query Frame = 1
Query:    1 QEVLVKC-RVGQFPSRKGFYLLVYDDHYQGSLYETWHVIVQARLRMDVHSLLGQQSPADLIVRGDRYSRNVRAFSSCPAEVSFEPANAFQLVPGAYNRVELRFRPLST-GSRKIHVHLVDLDSMEIVGAWLATATAMPPVITKSYDVELPLGRACHKRIAYSNPWTTTRLFRLASSDPRILRPRYESLEASFFGTKFVAGGGTGFLRLWFAAPEGTNVRKEVFLFVNDSEGQNEECLLICMR 720
            QE+L+K  ++G FPS   FY+L++DD ++  L E WHVIV +RLR DV + LGQ SP +  V GD + R+VRA++S   E  F P++ FQLVP A N  +  F PL   G+RK HVHLVD+D+ ++V AW+ T  A PP +TK YDV++ +G A HK+I+Y NPW   R ++L SSDP ++RP+   L+    G +F        +RL+ A P     R EVFL VND  GQNE+C  + + 
Sbjct: 1624 QEILIKYWKLGAFPSMGDFYILIFDDPWRCRLSEIWHVIVASRLRKDVQAKLGQASPIEFTVPGDNHLRHVRAYASNELETRFLPSSVFQLVPNAVNSFKASFTPLGAPGTRKTHVHLVDVDTKQLVAAWILTCVAAPPQVTKDYDVDVRVGEAAHKKISYENPWNRRRSYQLMSSDPNVMRPKVNELQIQPHGREF--------MRLYIA-PLDRAGRVEVFLMVNDERGQNEDCFRVIVN 1856          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10370.363.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LAY6_ECTSI2.850e-14694.63Nephroretinin 4 n=1 Tax=Ectocarpus siliculosus Tax... [more]
A0A835YU49_9STRA7.690e-8354.55Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CDE8_9STRA6.800e-7953.85Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2QW27_9STRA3.150e-7047.68Hypothetical protein n=2 Tax=Triparma pacifica Tax... [more]
A0A7S2HFZ8_9STRA5.150e-6946.69Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A6G0XXV1_9STRA6.730e-6248.52Uncharacterized protein n=2 Tax=Aphanomyces euteic... [more]
T0RSH2_SAPDV9.220e-6245.57Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
W4H6W9_9STRA2.330e-6145.99Uncharacterized protein n=11 Tax=Aphanomyces astac... [more]
A0A7S1XUC6_9STRA5.500e-6147.33Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S2C1Z8_9STRA3.580e-6045.45Hypothetical protein n=1 Tax=Florenciella parvula ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10370contigEcto-sp13_S_contig10370:612..1937 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score467.2
Seed ortholog evalue4.6e-129
Seed eggNOG ortholog2880.D8LAY6
Model size729
KEGG koko:K02183
KEGG Pathwayko04014,ko04015,ko04016,ko04020,ko04022,ko04024,ko04070,ko04114,ko04218,ko04261,ko04270,ko04371,ko04626,ko04713,ko04720,ko04722,ko04728,ko04740,ko04744,ko04745,ko04750,ko04910,ko04912,ko04915,ko04916,ko04921,ko04922,ko04924,ko04925,ko04970,ko04971,ko05010,ko05031,ko05034,ko05133,ko05152,ko05167,ko05200,ko05214,ko05418,map04014,map04015,map04016,map04020,map04022,map04024,map04070,map04114,map04218,map04261,map04270,map04371,map04626,map04713,map04720,map04722,map04728,map04740,map04744,map04745,map04750,map04910,map04912,map04915,map04916,map04921,map04922,map04924,map04925,map04970,map04971,map05010,map05031,map05034,map05133,map05152,map05167,map05200,map05214,map05418
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005215,GO:0005432,GO:0005488,GO:0005509,GO:0006810,GO:0006811,GO:0006812,GO:0006814,GO:0006816,GO:0008150,GO:0008324,GO:0015075,GO:0015077,GO:0015081,GO:0015085,GO:0015291,GO:0015297,GO:0015298,GO:0015318,GO:0015368,GO:0015491,GO:0015672,GO:0022804,GO:0022857,GO:0022890,GO:0030001,GO:0034220,GO:0035725,GO:0042592,GO:0043167,GO:0043169,GO:0046872,GO:0046873,GO:0048878,GO:0050801,GO:0051179,GO:0051234,GO:0055065,GO:0055074,GO:0055080,GO:0055085,GO:0065007,GO:0065008,GO:0070588,GO:0070838,GO:0072507,GO:0072511,GO:0098655,GO:0098660,GO:0098662,GO:0098771,GO:0099516
Exons4
EggNOG free text desc.Ca2 -binding protein (EF-Hand superfamily
EggNOG OGsCOG5126@1,KOG0027@2759
Cds size729
COG Functional cat.DTZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko03036,ko04131,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462526.672904-CDS-Ecto-sp13_S_contig10370:611..7551681462526.672904-CDS-Ecto-sp13_S_contig10370:611..755Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10370 612..755 -
1681462526.6869097-CDS-Ecto-sp13_S_contig10370:981..12761681462526.6869097-CDS-Ecto-sp13_S_contig10370:981..1276Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10370 982..1276 -
1681462526.6970177-CDS-Ecto-sp13_S_contig10370:1497..17241681462526.6970177-CDS-Ecto-sp13_S_contig10370:1497..1724Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10370 1498..1724 -
1681462526.7123482-CDS-Ecto-sp13_S_contig10370:1874..19371681462526.7123482-CDS-Ecto-sp13_S_contig10370:1874..1937Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10370 1875..1937 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10370.363.1prot_Ecto-sp13_S_contig10370.363.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10370 612..1937 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10370.363.1

>prot_Ecto-sp13_S_contig10370.363.1 ID=prot_Ecto-sp13_S_contig10370.363.1|Name=mRNA_Ecto-sp13_S_contig10370.363.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=243bp
QEVLVKCRVGQFPSRKGFYLLVYDDHYQGSLYETWHVIVQARLRMDVHSL
LGQQSPADLIVRGDRYSRNVRAFSSCPAEVSFEPANAFQLVPGAYNRVEL
RFRPLSTGSRKIHVHLVDLDSMEIVGAWLATATAMPPVITKSYDVELPLG
RACHKRIAYSNPWTTTRLFRLASSDPRILRPRYESLEASFFGTKFVAGGG
TGFLRLWFAAPEGTNVRKEVFLFVNDSEGQNEECLLICMRGG*
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mRNA from alignment at Ecto-sp13_S_contig10370:612..1937-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10370.363.1 ID=mRNA_Ecto-sp13_S_contig10370.363.1|Name=mRNA_Ecto-sp13_S_contig10370.363.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1326bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10370:612..1937- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGAAGTGCTCGTGAAGTGCAGGGTCGGACAATTCCCTTCGCGGAAGGG GTTTTATTTACTTGTGAGTACGAGGGGGGGGGGCGAAAGTCGTTTTTCAA GCTCTCTCTGATTCCCTCATCGCCCTGACCATCGACGATGACATAAGACT TTACGGGGACTCGACTGCTTTGTGCAATGAACGGATCGTGTGCACCGATG GCTCTCTTTGCAGGTGTATGACGACCACTACCAGGGATCGCTGTATGAAA CGTGGCATGTCATCGTACAGGCAAGGCTGCGGATGGATGTGCATTCCCTG CTTGGACAGCAGAGCCCTGCCGACCTGATTGTACGGGGCGACCGTTATAG TCGAAACGTCCGAGCATTCTCCTCTTGCCCAGCCGAGGTATCGTTTGAGC CGGCGAATGCCTTCCAACTCGTCCCTGGAGCATACAATCGGTGAGATTTG AGAGTCTGGCCGAAGATACCCGCCGTTGTGGACGGTGGCTGGCAAGCTTG CGGGCACGGCACCTCCTTTATCTGTGGATGTAAGCGCCTAATTGAATGCG GAACACCCATTTTTCACCTACCGATTCGGTCGCTGCAACTTGTCCACCTT TGAATCAAACTGTATGACGGTTGTCCAAACCCATCGCCCCCGACTCTGCG CCGTTCGTTAGGGTGGAATTACGCTTCCGTCCGCTCTCAACTGGCAGCCG AAAAATCCATGTCCACCTCGTCGATCTGGACTCAATGGAGATAGTCGGCG CCTGGCTCGCGACGGCCACCGCGATGCCTCCTGTGATCACCAAGTCGTAC GACGTTGAGCTTCCACTTGGACGTGCTTGCCACAAACGCATAGCATACTC AAACCCTTGGACCACCACAAGGCTTTTCCGGCTTGCTTCTTCGGACCCAA GGATTCTCCGGCCGCGTTACGAGAGCCTGGAGGCAAGTTTTTTCGGCACA AAATTTGTACGGGAAACTACAGTAGTGTAGCGAAAGGAAGGCAAATGCGA ATTGTACAATGTATAGACTAGTCGCACTTCGCCCGAAGACGGGAAAAGTG TTAACTCGATGAAAGTCACGACTTCGGCCGCTAGAAGCGTGATCGCGCCC AACGGCCGTGGCTGCTTGCGCTCCCATCGAATGGTGTGTTTTCCGTTGAC ATCTTGTCCGGTTTCCACGCTGCAATGACCAGGTGGCCGGCGGTGGTACA GGTTTCCTCCGCTTGTGGTTCGCTGCCCCGGAGGGCACCAACGTCAGAAA AGAGGTTTTCCTCTTCGTTAACGACAGCGAGGGACAAAACGAGGAGTGTC TCCTGATCTGCATGCGAGGGGGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10370:612..1937-

>mRNA_Ecto-sp13_S_contig10370.363.1 ID=mRNA_Ecto-sp13_S_contig10370.363.1|Name=mRNA_Ecto-sp13_S_contig10370.363.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=729bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10370:612..1937- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGAAGTGCTCGTGAAGTGCAGGGTCGGACAATTCCCTTCGCGGAAGGG
GTTTTATTTACTTGTGTATGACGACCACTACCAGGGATCGCTGTATGAAA
CGTGGCATGTCATCGTACAGGCAAGGCTGCGGATGGATGTGCATTCCCTG
CTTGGACAGCAGAGCCCTGCCGACCTGATTGTACGGGGCGACCGTTATAG
TCGAAACGTCCGAGCATTCTCCTCTTGCCCAGCCGAGGTATCGTTTGAGC
CGGCGAATGCCTTCCAACTCGTCCCTGGAGCATACAATCGGGTGGAATTA
CGCTTCCGTCCGCTCTCAACTGGCAGCCGAAAAATCCATGTCCACCTCGT
CGATCTGGACTCAATGGAGATAGTCGGCGCCTGGCTCGCGACGGCCACCG
CGATGCCTCCTGTGATCACCAAGTCGTACGACGTTGAGCTTCCACTTGGA
CGTGCTTGCCACAAACGCATAGCATACTCAAACCCTTGGACCACCACAAG
GCTTTTCCGGCTTGCTTCTTCGGACCCAAGGATTCTCCGGCCGCGTTACG
AGAGCCTGGAGGCAAGTTTTTTCGGCACAAAATTTGTGGCCGGCGGTGGT
ACAGGTTTCCTCCGCTTGTGGTTCGCTGCCCCGGAGGGCACCAACGTCAG
AAAAGAGGTTTTCCTCTTCGTTAACGACAGCGAGGGACAAAACGAGGAGT
GTCTCCTGATCTGCATGCGAGGGGGGTGA
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