mRNA_Ecto-sp13_S_contig10360.356.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10360.356.1 vs. uniprot
Match: A0A6H5JH84_9PHAE (Mre11_DNA_bind domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JH84_9PHAE) HSP 1 Score: 444 bits (1142), Expect = 1.230e-147 Identity = 215/234 (91.88%), Postives = 217/234 (92.74%), Query Frame = 1
Query: 127 MLLLAKERKVDFVLLGGDLFHENKPSRRTLYQTMDILRRHCMGDEPVSFQIISEQAHNFKDRRGTVLTTTRGTPPLFGHVNYEDPYFSVGLPIFSIHGNHDDPTREGGVEALAALDLLHVANLVNYFGKSNKVDDVEVNPILIQKGLTKVALYGMGSMRDERLNRMWQQKKVRFLRPLEDDGGKDFFNVFVLHQNRDLGRGKKNCIHESMIPEWIDLVIWGHEHECQVGSDQTL 828
MLLLAKERKVDFVLLGGDLFHENKPSRRTLYQTMDILRRHCMGDEPVSFQIISEQAHNFKDR FGHVNYEDPYFSVGLPIFSIHGNHDDPTREGGVEALAALDLLHVANLVNYFGKSNKVDDVEVNPILIQKGLTKVALYGMGSMRDERLNRMWQQKKVRFLRPLEDDGGKDFFNVFVLHQNRDLGRGKKNCIHESMIPEWIDLVIWGHEHECQV ++L
Sbjct: 1 MLLLAKERKVDFVLLGGDLFHENKPSRRTLYQTMDILRRHCMGDEPVSFQIISEQAHNFKDR--------------FGHVNYEDPYFSVGLPIFSIHGNHDDPTREGGVEALAALDLLHVANLVNYFGKSNKVDDVEVNPILIQKGLTKVALYGMGSMRDERLNRMWQQKKVRFLRPLEDDGGKDFFNVFVLHQNRDLGRGKKNCIHESMIPEWIDLVIWGHEHECQVEPMESL 220
BLAST of mRNA_Ecto-sp13_S_contig10360.356.1 vs. uniprot
Match: A0A7S2UFV9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UFV9_9STRA) HSP 1 Score: 375 bits (963), Expect = 4.630e-123 Identity = 182/272 (66.91%), Postives = 217/272 (79.78%), Query Frame = 1
Query: 25 ESLSIMVATDSHLGRVYMERDPVRGKDSFAAFEEMLLLAKERKVDFVLLGGDLFHENKPSRRTLYQTMDILRRHCMGDEPVSFQIISEQAHNFKDRRGTVLTTTRGTPPLFGHVNYEDPYFSVGLPIFSIHGNHDDPTREGGVEALAALDLLHVANLVNYFGKSNKVDDVEVNPILIQKGLTKVALYGMGSMRDERLNRMWQQKKVRFLRP---LEDDGGKD--FFNVFVLHQNRDLGRGKKNCIHESMIPEWIDLVIWGHEHECQVGSDQT 825
E+L IM++TD+HLG Y E+DP+RG DSFAA EE+L LA+ K D VLL GDLFH+NKPSRRTL++TM+ILRR+CMG PV FQI+S+QA NF+ GTV NYED Y+SV LPIFSIHGNHDDPTR+GG E LAALDLL V+NLVNYFG+ ++VD VEV+PILI+KG T+VALYGMGSMRDERLNRMWQ KKVRFLRP EDD ++ FFN+F LHQNRDLGRG KNC+HESMIPEW+DLV+WGHEHEC + + ++
Sbjct: 76 ETLRIMLSTDNHLG--YCEKDPIRGSDSFAALEEVLSLARRHKCDMVLLAGDLFHDNKPSRRTLHKTMEILRRYCMGPNPVQFQIVSDQAANFRSVHGTV--------------NYEDSYYSVDLPIFSIHGNHDDPTRDGGTEMLAALDLLSVSNLVNYFGRHDEVDKVEVSPILIRKGSTRVALYGMGSMRDERLNRMWQGKKVRFLRPEVDAEDDDEEENAFFNIFALHQNRDLGRGSKNCVHESMIPEWMDLVVWGHEHECLIEAMES 331
BLAST of mRNA_Ecto-sp13_S_contig10360.356.1 vs. uniprot
Match: B8C3H0_THAPS (Mre11_DNA_bind domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C3H0_THAPS) HSP 1 Score: 367 bits (942), Expect = 1.320e-122 Identity = 172/267 (64.42%), Postives = 218/267 (81.65%), Query Frame = 1
Query: 28 SLSIMVATDSHLGRVYMERDPVRGKDSFAAFEEMLLLAKERKVDFVLLGGDLFHENKPSRRTLYQTMDILRRHCMGDEPVSFQIISEQAHNFKDRRGTVLTTTRGTPPLFGHVNYEDPYFSVGLPIFSIHGNHDDPTREGGVEALAALDLLHVANLVNYFGKSNKVDDVEVNPILIQKGLTKVALYGMGSMRDERLNRMWQQKKVRFLRPLEDDGGKDFFNVFVLHQNRDLGRGKKNCIHESMIPEWIDLVIWGHEHECQVGSDQTL 828
+L ++++TD+HLG Y+ERDP+RG DSFAAFEE+L LA+ +K D VLL GD+FH+NKPSRRTL++TM+ILRR+CMG E V FQI+S+Q K+ +V+T G NYED Y+SV +PIF+IHGNHDDPTR+GG E L+ALDLL V+NL+NYFG+ ++VD+V+V+P+L+QKG TKVALYGMGSMRDERLNRMWQ KKV+FLRP EDD +FN+F LHQNRDLGRG KNC+HESMIPEW+DLV+WGHEHEC + ++L
Sbjct: 4 TLRVLLSTDNHLG--YLERDPIRGLDSFAAFEEVLSLARSQKADLVLLSGDVFHDNKPSRRTLHKTMEILRRYCMGGESVGFQIVSDQ----KECLRSVVT---------GRANYEDEYYSVDMPIFAIHGNHDDPTRDGGTELLSALDLLSVSNLINYFGRQDQVDNVQVSPVLLQKGGTKVALYGMGSMRDERLNRMWQGKKVKFLRPEEDDNR--WFNIFTLHQNRDLGRGSKNCVHESMIPEWMDLVVWGHEHECLITPQESL 253
BLAST of mRNA_Ecto-sp13_S_contig10360.356.1 vs. uniprot
Match: W7UA87_9STRA (Meiotic recombination 11 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7UA87_9STRA) HSP 1 Score: 365 bits (938), Expect = 3.000e-122 Identity = 172/273 (63.00%), Postives = 215/273 (78.75%), Query Frame = 1
Query: 16 PEPESLSIMVATDSHLGRVYMERDPVRGKDSFAAFEEMLLLAKERKVDFVLLGGDLFHENKPSRRTLYQTMDILRRHCMGDEPVSFQIISEQAHNFKDRRGTVLTTTRGTPPLFGHVNYEDPYFSVGLPIFSIHGNHDDPTREGGVEALAALDLLHVANLVNYFGKSNKVDDVEVNPILIQKGLTKVALYGMGSMRDERLNRMWQQKKVRFLR--PLEDDGGKDFFNVFVLHQNRDLGRGKKNCIHESMIPEWIDLVIWGHEHECQVGSDQTL 828
P+ ++L +M+ATD+H+G ++ERDPVRG DSFAA EE+ L AKE VDFVLLGGDLFHENKPSR+TL+ TM ILRRHC+G PVSFQ+IS+ A + + + PP F HVNYEDP ++VGLP+FSIHGNHDDPTR+G E L+A+DLL + NLVNYFGK++ D VEV P+L+QKG T +ALYG+G+MRDERLNRMWQ+KK++FLR P E DFF++F LHQNRD GRG+KNC+ ESMIPEW+DLV+WGHEHEC V ++L
Sbjct: 8 PDEDTLRVMIATDNHVG--FLERDPVRGLDSFAALEEIFLRAKEYHVDFVLLGGDLFHENKPSRKTLHSTMAILRRHCLGSTPVSFQVISDPAPQGEGQEAS--------PPAFSHVNYEDPNYAVGLPVFSIHGNHDDPTRDGPSEPLSAMDLLGMTNLVNYFGKASATDAVEVAPLLLQKGRTCMALYGLGNMRDERLNRMWQKKKIKFLRHAPRERGAAPDFFSLFALHQNRDTGRGQKNCVQESMIPEWMDLVVWGHEHECLVRPTRSL 270
BLAST of mRNA_Ecto-sp13_S_contig10360.356.1 vs. uniprot
Match: B7G2N6_PHATC (Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G2N6_PHATC) HSP 1 Score: 363 bits (931), Expect = 6.620e-120 Identity = 173/275 (62.91%), Postives = 214/275 (77.82%), Query Frame = 1
Query: 16 PEPESLSIMVATDSHLGRVYMERDPVRGKDSFAAFEEMLLLAKERKVDFVLLGGDLFHENKPSRRTLYQTMDILRRHCMGDEPVSFQIISEQAHNFKDRRGTVLTTTRGTPPLFGHVNYEDPYFSVGLPIFSIHGNHDDPTREGGVEALAALDLLHVANLVNYFGKSNKVDDVEVNPILIQKGLTKVALYGMGSMRDERLNRMWQQKKVRFLRPLEDDGGKD----FFNVFVLHQNRDLGRGKKNCIHESMIPEWIDLVIWGHEHECQVGSDQTL 828
P+ +L +M++TD+HLG Y E+DPVRG DSFAAFEE+L LAK+ + D VL+ GDLFH+N+PSRRTLY TM+I+RR+CMG +PV QI+S+QA NF++ GTV NY+D +SV LPIFSIHGNHDDPTR+ E LAALDLL V+NLVNYFG+ +VD VE++P+LIQKG T++ALYGMGSMRDERLNRMWQ KKVRFLRP EDD + FFN+F LHQNRDLGRG KNC+ ESMIPEW+DLV+WGHEHEC + +++
Sbjct: 27 PDEHTLRMMLSTDNHLG--YAEKDPVRGMDSFAAFEEVLYLAKQFRCDMVLIAGDLFHDNRPSRRTLYITMEIIRRYCMGPDPVRIQIVSDQAQNFRNVSGTV--------------NYQDDNYSVDLPIFSIHGNHDDPTRDSHGELLAALDLLAVSNLVNYFGRQEQVDQVEISPVLIQKGATQLALYGMGSMRDERLNRMWQGKKVRFLRPAEDDEDNEHDTGFFNLFTLHQNRDLGRGSKNCVQESMIPEWMDLVVWGHEHECLIEFSESV 285
BLAST of mRNA_Ecto-sp13_S_contig10360.356.1 vs. uniprot
Match: B7G2N5_PHATC (Double-strand break repair protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G2N5_PHATC) HSP 1 Score: 363 bits (931), Expect = 6.430e-117 Identity = 173/275 (62.91%), Postives = 214/275 (77.82%), Query Frame = 1
Query: 16 PEPESLSIMVATDSHLGRVYMERDPVRGKDSFAAFEEMLLLAKERKVDFVLLGGDLFHENKPSRRTLYQTMDILRRHCMGDEPVSFQIISEQAHNFKDRRGTVLTTTRGTPPLFGHVNYEDPYFSVGLPIFSIHGNHDDPTREGGVEALAALDLLHVANLVNYFGKSNKVDDVEVNPILIQKGLTKVALYGMGSMRDERLNRMWQQKKVRFLRPLEDDGGKD----FFNVFVLHQNRDLGRGKKNCIHESMIPEWIDLVIWGHEHECQVGSDQTL 828
P+ +L +M++TD+HLG Y E+DPVRG DSFAAFEE+L LAK+ + D VL+ GDLFH+N+PSRRTLY TM+I+RR+CMG +PV QI+S+QA NF++ GTV NY+D +SV LPIFSIHGNHDDPTR+ E LAALDLL V+NLVNYFG+ +VD VE++P+LIQKG T++ALYGMGSMRDERLNRMWQ KKVRFLRP EDD + FFN+F LHQNRDLGRG KNC+ ESMIPEW+DLV+WGHEHEC + +++
Sbjct: 27 PDEHTLRMMLSTDNHLG--YAEKDPVRGMDSFAAFEEVLYLAKQFRCDMVLIAGDLFHDNRPSRRTLYITMEIIRRYCMGPDPVRIQIVSDQAQNFRNVSGTV--------------NYQDDNYSVDLPIFSIHGNHDDPTRDSHGELLAALDLLAVSNLVNYFGRQEQVDQVEISPVLIQKGATQLALYGMGSMRDERLNRMWQGKKVRFLRPAEDDEDNEHDTGFFNLFTLHQNRDLGRGSKNCVQESMIPEWMDLVVWGHEHECLIEFSESV 285
BLAST of mRNA_Ecto-sp13_S_contig10360.356.1 vs. uniprot
Match: A0A4D9CWI9_9STRA (Double-strand break repair protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CWI9_9STRA) HSP 1 Score: 361 bits (926), Expect = 4.420e-116 Identity = 170/273 (62.27%), Postives = 214/273 (78.39%), Query Frame = 1
Query: 16 PEPESLSIMVATDSHLGRVYMERDPVRGKDSFAAFEEMLLLAKERKVDFVLLGGDLFHENKPSRRTLYQTMDILRRHCMGDEPVSFQIISEQAHNFKDRRGTVLTTTRGTPPLFGHVNYEDPYFSVGLPIFSIHGNHDDPTREGGVEALAALDLLHVANLVNYFGKSNKVDDVEVNPILIQKGLTKVALYGMGSMRDERLNRMWQQKKVRFLRPLEDDGGK--DFFNVFVLHQNRDLGRGKKNCIHESMIPEWIDLVIWGHEHECQVGSDQTL 828
P+ ++L +M+ATD+H+G ++ERDPVRG DSFAA EE+ L AKE VDFVLLGGDLFHENKPSR+TL+ TM ILRRHC+G PVSFQ+IS+ A + + + PP F HVNYEDP ++VGLP+FSIHGNHDDPTR+G E L+A+DLL + NLVNYFGK++ D V V P+L+QKG T +ALYG+G+MRDERLNRMWQ+KK++FLR + G DFF++F LHQNRD GRG+KNC+ ESMIPEW+DLV+WGHEHEC V ++L
Sbjct: 8 PDEDTLRVMIATDNHVG--FLERDPVRGLDSFAALEEIFLRAKEYHVDFVLLGGDLFHENKPSRKTLHSTMAILRRHCLGSTPVSFQVISDPAPQGEGQEAS--------PPAFSHVNYEDPNYAVGLPVFSIHGNHDDPTRDGPSEPLSAMDLLGMTNLVNYFGKASATDAVAVAPLLLQKGRTCMALYGLGNMRDERLNRMWQKKKIKFLRHASRETGAAPDFFSLFALHQNRDTGRGQKNCVQESMIPEWMDLVVWGHEHECLVRPTRSL 270
BLAST of mRNA_Ecto-sp13_S_contig10360.356.1 vs. uniprot
Match: A0A7S4MXX5_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MXX5_9STRA) HSP 1 Score: 363 bits (931), Expect = 4.720e-116 Identity = 175/281 (62.28%), Postives = 213/281 (75.80%), Query Frame = 1
Query: 25 ESLSIMVATDSHLGRVYMERDPVRGKDSFAAFEEMLLLAKERKVDFVLLGGDLFHENKPSRRTLYQTMDILRRHCMGDEPVSFQIISEQAHNFKDRRGTVLTTTRGTPPLFGHVNYEDPYFSVGLPIFSIHGNHDDPTREGGVEALAALDLLHVANLVNYFGKSNKVDDVEVNPILIQKGLTKVALYGMGSMRDERLNRMWQQKKVRFLRPLEDDGGKD--------------FFNVFVLHQNRDLGRGKKNCIHESMIPEWIDLVIWGHEHECQVGSDQT 825
++L IMV+TD+HLG Y ERDP+RG DSFAAFEE+L LAK K D +LL GDLFH+NKPSRRTL++TM+I+RR+CMG +PV FQI+S+QA NF+ TV NYED ++S+ LPIFSIHGNHDDPTR+GG E LAALDLL V NLVNYFG+ ++VD VEV P+LI+KG TKVA+YGMGSMRDERLNRMWQ KKVRFL P+ G +FN+F LHQNRDLGRG KNC+HESMIPE++DLV+WGHEHEC++ D++
Sbjct: 33 DTLRIMVSTDNHLG--YAERDPIRGLDSFAAFEEVLALAKRHKCDMLLLAGDLFHDNKPSRRTLHKTMEIIRRYCMGPQPVQFQIVSDQAENFRGPTNTV--------------NYEDEHYSIDLPIFSIHGNHDDPTRDGGTEMLAALDLLAVTNLVNYFGRQDEVDKVEVAPVLIKKGSTKVAIYGMGSMRDERLNRMWQGKKVRFLEPVVAAGXXXXXXXXXXXXGVNGGWFNIFALHQNRDLGRGSKNCVHESMIPEYMDLVVWGHEHECKIEPDES 297
BLAST of mRNA_Ecto-sp13_S_contig10360.356.1 vs. uniprot
Match: A0A7S3ZYR3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZYR3_9STRA) HSP 1 Score: 353 bits (906), Expect = 1.510e-115 Identity = 168/264 (63.64%), Postives = 206/264 (78.03%), Query Frame = 1
Query: 34 SIMVATDSHLGRVYMERDPVRGKDSFAAFEEMLLLAKERKVDFVLLGGDLFHENKPSRRTLYQTMDILRRHCMGDEPVSFQIISEQAHNFKDRRGTVLTTTRGTPPLFGHVNYEDPYFSVGLPIFSIHGNHDDPTREGGVEALAALDLLHVANLVNYFGKSNKVDDVEVNPILIQKGLTKVALYGMGSMRDERLNRMWQQKKVRFLRPLEDDGGKDFFNVFVLHQNRDLGRGKKNCIHESMIPEWIDLVIWGHEHECQVGSDQT 825
+IMVATDSHLG Y +RD VRG DSFAAFEE+L LA +R DF+LL GDLFH+NKPSRRTL++TM +LRR+ + D V F+++S+Q NF+ VNYEDP+ SVGLPIFSIHGNHDDPTREGGVEALAALDLL VAN++NYFG+ D VEV+P+L++KG T+VALYG+G+MRDERLNRMWQQK+VRFLRP + +F++FVLHQNRD+GRG+ C+HESMIP WIDLVIWGHEHECQ+ ++
Sbjct: 79 TIMVATDSHLG--YCDRDAVRGTDSFAAFEEVLRLANDRGADFLLLAGDLFHDNKPSRRTLFKTMSLLRRYALSDAAVGFEVLSDQEANFRQS-----------------VNYEDPHVSVGLPIFSIHGNHDDPTREGGVEALAALDLLSVANMLNYFGRQEHADRVEVSPVLLRKGNTRVALYGLGNMRDERLNRMWQQKRVRFLRPRDGT----YFSIFVLHQNRDVGRGRNTCVHESMIPAWIDLVIWGHEHECQIKPRES 319
BLAST of mRNA_Ecto-sp13_S_contig10360.356.1 vs. uniprot
Match: A0A8J2X2L8_9STRA (Double-strand break repair protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X2L8_9STRA) HSP 1 Score: 353 bits (906), Expect = 6.570e-115 Identity = 168/264 (63.64%), Postives = 206/264 (78.03%), Query Frame = 1
Query: 34 SIMVATDSHLGRVYMERDPVRGKDSFAAFEEMLLLAKERKVDFVLLGGDLFHENKPSRRTLYQTMDILRRHCMGDEPVSFQIISEQAHNFKDRRGTVLTTTRGTPPLFGHVNYEDPYFSVGLPIFSIHGNHDDPTREGGVEALAALDLLHVANLVNYFGKSNKVDDVEVNPILIQKGLTKVALYGMGSMRDERLNRMWQQKKVRFLRPLEDDGGKDFFNVFVLHQNRDLGRGKKNCIHESMIPEWIDLVIWGHEHECQVGSDQT 825
+IMVATDSHLG Y +RD VRG DSFAAFEE+L LA +R DF+LL GDLFH+NKPSRRTL++TM +LRR+ + D V F+++S+Q NF+ VNYEDP+ SVGLPIFSIHGNHDDPTREGGVEALAALDLL VAN++NYFG+ D VEV+P+L++KG T+VALYG+G+MRDERLNRMWQQK+VRFLRP + +F++FVLHQNRD+GRG+ C+HESMIP WIDLVIWGHEHECQ+ ++
Sbjct: 12 TIMVATDSHLG--YCDRDAVRGTDSFAAFEEVLRLANDRGADFLLLAGDLFHDNKPSRRTLFKTMSLLRRYALSDAAVGFEVLSDQEANFRQS-----------------VNYEDPHVSVGLPIFSIHGNHDDPTREGGVEALAALDLLSVANMLNYFGRQEHADRVEVSPVLLRKGNTRVALYGLGNMRDERLNRMWQQKRVRFLRPRDGT----YFSIFVLHQNRDVGRGRNTCVHESMIPAWIDLVIWGHEHECQIKPRES 252 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10360.356.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10360.356.1 >prot_Ecto-sp13_S_contig10360.356.1 ID=prot_Ecto-sp13_S_contig10360.356.1|Name=mRNA_Ecto-sp13_S_contig10360.356.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=280bp SEQDVPEPESLSIMVATDSHLGRVYMERDPVRGKDSFAAFEEMLLLAKERback to top mRNA from alignment at Ecto-sp13_S_contig10360:1402..5215+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10360.356.1 ID=mRNA_Ecto-sp13_S_contig10360.356.1|Name=mRNA_Ecto-sp13_S_contig10360.356.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3814bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10360:1402..5215+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10360:1402..5215+ >mRNA_Ecto-sp13_S_contig10360.356.1 ID=mRNA_Ecto-sp13_S_contig10360.356.1|Name=mRNA_Ecto-sp13_S_contig10360.356.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=840bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10360:1402..5215+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |