mRNA_Ecto-sp13_S_contig10360.356.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10360.356.1
Unique NamemRNA_Ecto-sp13_S_contig10360.356.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig10360.356.1 vs. uniprot
Match: A0A6H5JH84_9PHAE (Mre11_DNA_bind domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JH84_9PHAE)

HSP 1 Score: 444 bits (1142), Expect = 1.230e-147
Identity = 215/234 (91.88%), Postives = 217/234 (92.74%), Query Frame = 1
Query:  127 MLLLAKERKVDFVLLGGDLFHENKPSRRTLYQTMDILRRHCMGDEPVSFQIISEQAHNFKDRRGTVLTTTRGTPPLFGHVNYEDPYFSVGLPIFSIHGNHDDPTREGGVEALAALDLLHVANLVNYFGKSNKVDDVEVNPILIQKGLTKVALYGMGSMRDERLNRMWQQKKVRFLRPLEDDGGKDFFNVFVLHQNRDLGRGKKNCIHESMIPEWIDLVIWGHEHECQVGSDQTL 828
            MLLLAKERKVDFVLLGGDLFHENKPSRRTLYQTMDILRRHCMGDEPVSFQIISEQAHNFKDR              FGHVNYEDPYFSVGLPIFSIHGNHDDPTREGGVEALAALDLLHVANLVNYFGKSNKVDDVEVNPILIQKGLTKVALYGMGSMRDERLNRMWQQKKVRFLRPLEDDGGKDFFNVFVLHQNRDLGRGKKNCIHESMIPEWIDLVIWGHEHECQV   ++L
Sbjct:    1 MLLLAKERKVDFVLLGGDLFHENKPSRRTLYQTMDILRRHCMGDEPVSFQIISEQAHNFKDR--------------FGHVNYEDPYFSVGLPIFSIHGNHDDPTREGGVEALAALDLLHVANLVNYFGKSNKVDDVEVNPILIQKGLTKVALYGMGSMRDERLNRMWQQKKVRFLRPLEDDGGKDFFNVFVLHQNRDLGRGKKNCIHESMIPEWIDLVIWGHEHECQVEPMESL 220          
BLAST of mRNA_Ecto-sp13_S_contig10360.356.1 vs. uniprot
Match: A0A7S2UFV9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UFV9_9STRA)

HSP 1 Score: 375 bits (963), Expect = 4.630e-123
Identity = 182/272 (66.91%), Postives = 217/272 (79.78%), Query Frame = 1
Query:   25 ESLSIMVATDSHLGRVYMERDPVRGKDSFAAFEEMLLLAKERKVDFVLLGGDLFHENKPSRRTLYQTMDILRRHCMGDEPVSFQIISEQAHNFKDRRGTVLTTTRGTPPLFGHVNYEDPYFSVGLPIFSIHGNHDDPTREGGVEALAALDLLHVANLVNYFGKSNKVDDVEVNPILIQKGLTKVALYGMGSMRDERLNRMWQQKKVRFLRP---LEDDGGKD--FFNVFVLHQNRDLGRGKKNCIHESMIPEWIDLVIWGHEHECQVGSDQT 825
            E+L IM++TD+HLG  Y E+DP+RG DSFAA EE+L LA+  K D VLL GDLFH+NKPSRRTL++TM+ILRR+CMG  PV FQI+S+QA NF+   GTV              NYED Y+SV LPIFSIHGNHDDPTR+GG E LAALDLL V+NLVNYFG+ ++VD VEV+PILI+KG T+VALYGMGSMRDERLNRMWQ KKVRFLRP    EDD  ++  FFN+F LHQNRDLGRG KNC+HESMIPEW+DLV+WGHEHEC + + ++
Sbjct:   76 ETLRIMLSTDNHLG--YCEKDPIRGSDSFAALEEVLSLARRHKCDMVLLAGDLFHDNKPSRRTLHKTMEILRRYCMGPNPVQFQIVSDQAANFRSVHGTV--------------NYEDSYYSVDLPIFSIHGNHDDPTRDGGTEMLAALDLLSVSNLVNYFGRHDEVDKVEVSPILIRKGSTRVALYGMGSMRDERLNRMWQGKKVRFLRPEVDAEDDDEEENAFFNIFALHQNRDLGRGSKNCVHESMIPEWMDLVVWGHEHECLIEAMES 331          
BLAST of mRNA_Ecto-sp13_S_contig10360.356.1 vs. uniprot
Match: B8C3H0_THAPS (Mre11_DNA_bind domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C3H0_THAPS)

HSP 1 Score: 367 bits (942), Expect = 1.320e-122
Identity = 172/267 (64.42%), Postives = 218/267 (81.65%), Query Frame = 1
Query:   28 SLSIMVATDSHLGRVYMERDPVRGKDSFAAFEEMLLLAKERKVDFVLLGGDLFHENKPSRRTLYQTMDILRRHCMGDEPVSFQIISEQAHNFKDRRGTVLTTTRGTPPLFGHVNYEDPYFSVGLPIFSIHGNHDDPTREGGVEALAALDLLHVANLVNYFGKSNKVDDVEVNPILIQKGLTKVALYGMGSMRDERLNRMWQQKKVRFLRPLEDDGGKDFFNVFVLHQNRDLGRGKKNCIHESMIPEWIDLVIWGHEHECQVGSDQTL 828
            +L ++++TD+HLG  Y+ERDP+RG DSFAAFEE+L LA+ +K D VLL GD+FH+NKPSRRTL++TM+ILRR+CMG E V FQI+S+Q    K+   +V+T         G  NYED Y+SV +PIF+IHGNHDDPTR+GG E L+ALDLL V+NL+NYFG+ ++VD+V+V+P+L+QKG TKVALYGMGSMRDERLNRMWQ KKV+FLRP EDD    +FN+F LHQNRDLGRG KNC+HESMIPEW+DLV+WGHEHEC +   ++L
Sbjct:    4 TLRVLLSTDNHLG--YLERDPIRGLDSFAAFEEVLSLARSQKADLVLLSGDVFHDNKPSRRTLHKTMEILRRYCMGGESVGFQIVSDQ----KECLRSVVT---------GRANYEDEYYSVDMPIFAIHGNHDDPTRDGGTELLSALDLLSVSNLINYFGRQDQVDNVQVSPVLLQKGGTKVALYGMGSMRDERLNRMWQGKKVKFLRPEEDDNR--WFNIFTLHQNRDLGRGSKNCVHESMIPEWMDLVVWGHEHECLITPQESL 253          
BLAST of mRNA_Ecto-sp13_S_contig10360.356.1 vs. uniprot
Match: W7UA87_9STRA (Meiotic recombination 11 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7UA87_9STRA)

HSP 1 Score: 365 bits (938), Expect = 3.000e-122
Identity = 172/273 (63.00%), Postives = 215/273 (78.75%), Query Frame = 1
Query:   16 PEPESLSIMVATDSHLGRVYMERDPVRGKDSFAAFEEMLLLAKERKVDFVLLGGDLFHENKPSRRTLYQTMDILRRHCMGDEPVSFQIISEQAHNFKDRRGTVLTTTRGTPPLFGHVNYEDPYFSVGLPIFSIHGNHDDPTREGGVEALAALDLLHVANLVNYFGKSNKVDDVEVNPILIQKGLTKVALYGMGSMRDERLNRMWQQKKVRFLR--PLEDDGGKDFFNVFVLHQNRDLGRGKKNCIHESMIPEWIDLVIWGHEHECQVGSDQTL 828
            P+ ++L +M+ATD+H+G  ++ERDPVRG DSFAA EE+ L AKE  VDFVLLGGDLFHENKPSR+TL+ TM ILRRHC+G  PVSFQ+IS+ A   + +  +        PP F HVNYEDP ++VGLP+FSIHGNHDDPTR+G  E L+A+DLL + NLVNYFGK++  D VEV P+L+QKG T +ALYG+G+MRDERLNRMWQ+KK++FLR  P E     DFF++F LHQNRD GRG+KNC+ ESMIPEW+DLV+WGHEHEC V   ++L
Sbjct:    8 PDEDTLRVMIATDNHVG--FLERDPVRGLDSFAALEEIFLRAKEYHVDFVLLGGDLFHENKPSRKTLHSTMAILRRHCLGSTPVSFQVISDPAPQGEGQEAS--------PPAFSHVNYEDPNYAVGLPVFSIHGNHDDPTRDGPSEPLSAMDLLGMTNLVNYFGKASATDAVEVAPLLLQKGRTCMALYGLGNMRDERLNRMWQKKKIKFLRHAPRERGAAPDFFSLFALHQNRDTGRGQKNCVQESMIPEWMDLVVWGHEHECLVRPTRSL 270          
BLAST of mRNA_Ecto-sp13_S_contig10360.356.1 vs. uniprot
Match: B7G2N6_PHATC (Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G2N6_PHATC)

HSP 1 Score: 363 bits (931), Expect = 6.620e-120
Identity = 173/275 (62.91%), Postives = 214/275 (77.82%), Query Frame = 1
Query:   16 PEPESLSIMVATDSHLGRVYMERDPVRGKDSFAAFEEMLLLAKERKVDFVLLGGDLFHENKPSRRTLYQTMDILRRHCMGDEPVSFQIISEQAHNFKDRRGTVLTTTRGTPPLFGHVNYEDPYFSVGLPIFSIHGNHDDPTREGGVEALAALDLLHVANLVNYFGKSNKVDDVEVNPILIQKGLTKVALYGMGSMRDERLNRMWQQKKVRFLRPLEDDGGKD----FFNVFVLHQNRDLGRGKKNCIHESMIPEWIDLVIWGHEHECQVGSDQTL 828
            P+  +L +M++TD+HLG  Y E+DPVRG DSFAAFEE+L LAK+ + D VL+ GDLFH+N+PSRRTLY TM+I+RR+CMG +PV  QI+S+QA NF++  GTV              NY+D  +SV LPIFSIHGNHDDPTR+   E LAALDLL V+NLVNYFG+  +VD VE++P+LIQKG T++ALYGMGSMRDERLNRMWQ KKVRFLRP EDD   +    FFN+F LHQNRDLGRG KNC+ ESMIPEW+DLV+WGHEHEC +   +++
Sbjct:   27 PDEHTLRMMLSTDNHLG--YAEKDPVRGMDSFAAFEEVLYLAKQFRCDMVLIAGDLFHDNRPSRRTLYITMEIIRRYCMGPDPVRIQIVSDQAQNFRNVSGTV--------------NYQDDNYSVDLPIFSIHGNHDDPTRDSHGELLAALDLLAVSNLVNYFGRQEQVDQVEISPVLIQKGATQLALYGMGSMRDERLNRMWQGKKVRFLRPAEDDEDNEHDTGFFNLFTLHQNRDLGRGSKNCVQESMIPEWMDLVVWGHEHECLIEFSESV 285          
BLAST of mRNA_Ecto-sp13_S_contig10360.356.1 vs. uniprot
Match: B7G2N5_PHATC (Double-strand break repair protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G2N5_PHATC)

HSP 1 Score: 363 bits (931), Expect = 6.430e-117
Identity = 173/275 (62.91%), Postives = 214/275 (77.82%), Query Frame = 1
Query:   16 PEPESLSIMVATDSHLGRVYMERDPVRGKDSFAAFEEMLLLAKERKVDFVLLGGDLFHENKPSRRTLYQTMDILRRHCMGDEPVSFQIISEQAHNFKDRRGTVLTTTRGTPPLFGHVNYEDPYFSVGLPIFSIHGNHDDPTREGGVEALAALDLLHVANLVNYFGKSNKVDDVEVNPILIQKGLTKVALYGMGSMRDERLNRMWQQKKVRFLRPLEDDGGKD----FFNVFVLHQNRDLGRGKKNCIHESMIPEWIDLVIWGHEHECQVGSDQTL 828
            P+  +L +M++TD+HLG  Y E+DPVRG DSFAAFEE+L LAK+ + D VL+ GDLFH+N+PSRRTLY TM+I+RR+CMG +PV  QI+S+QA NF++  GTV              NY+D  +SV LPIFSIHGNHDDPTR+   E LAALDLL V+NLVNYFG+  +VD VE++P+LIQKG T++ALYGMGSMRDERLNRMWQ KKVRFLRP EDD   +    FFN+F LHQNRDLGRG KNC+ ESMIPEW+DLV+WGHEHEC +   +++
Sbjct:   27 PDEHTLRMMLSTDNHLG--YAEKDPVRGMDSFAAFEEVLYLAKQFRCDMVLIAGDLFHDNRPSRRTLYITMEIIRRYCMGPDPVRIQIVSDQAQNFRNVSGTV--------------NYQDDNYSVDLPIFSIHGNHDDPTRDSHGELLAALDLLAVSNLVNYFGRQEQVDQVEISPVLIQKGATQLALYGMGSMRDERLNRMWQGKKVRFLRPAEDDEDNEHDTGFFNLFTLHQNRDLGRGSKNCVQESMIPEWMDLVVWGHEHECLIEFSESV 285          
BLAST of mRNA_Ecto-sp13_S_contig10360.356.1 vs. uniprot
Match: A0A4D9CWI9_9STRA (Double-strand break repair protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CWI9_9STRA)

HSP 1 Score: 361 bits (926), Expect = 4.420e-116
Identity = 170/273 (62.27%), Postives = 214/273 (78.39%), Query Frame = 1
Query:   16 PEPESLSIMVATDSHLGRVYMERDPVRGKDSFAAFEEMLLLAKERKVDFVLLGGDLFHENKPSRRTLYQTMDILRRHCMGDEPVSFQIISEQAHNFKDRRGTVLTTTRGTPPLFGHVNYEDPYFSVGLPIFSIHGNHDDPTREGGVEALAALDLLHVANLVNYFGKSNKVDDVEVNPILIQKGLTKVALYGMGSMRDERLNRMWQQKKVRFLRPLEDDGGK--DFFNVFVLHQNRDLGRGKKNCIHESMIPEWIDLVIWGHEHECQVGSDQTL 828
            P+ ++L +M+ATD+H+G  ++ERDPVRG DSFAA EE+ L AKE  VDFVLLGGDLFHENKPSR+TL+ TM ILRRHC+G  PVSFQ+IS+ A   + +  +        PP F HVNYEDP ++VGLP+FSIHGNHDDPTR+G  E L+A+DLL + NLVNYFGK++  D V V P+L+QKG T +ALYG+G+MRDERLNRMWQ+KK++FLR    + G   DFF++F LHQNRD GRG+KNC+ ESMIPEW+DLV+WGHEHEC V   ++L
Sbjct:    8 PDEDTLRVMIATDNHVG--FLERDPVRGLDSFAALEEIFLRAKEYHVDFVLLGGDLFHENKPSRKTLHSTMAILRRHCLGSTPVSFQVISDPAPQGEGQEAS--------PPAFSHVNYEDPNYAVGLPVFSIHGNHDDPTRDGPSEPLSAMDLLGMTNLVNYFGKASATDAVAVAPLLLQKGRTCMALYGLGNMRDERLNRMWQKKKIKFLRHASRETGAAPDFFSLFALHQNRDTGRGQKNCVQESMIPEWMDLVVWGHEHECLVRPTRSL 270          
BLAST of mRNA_Ecto-sp13_S_contig10360.356.1 vs. uniprot
Match: A0A7S4MXX5_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MXX5_9STRA)

HSP 1 Score: 363 bits (931), Expect = 4.720e-116
Identity = 175/281 (62.28%), Postives = 213/281 (75.80%), Query Frame = 1
Query:   25 ESLSIMVATDSHLGRVYMERDPVRGKDSFAAFEEMLLLAKERKVDFVLLGGDLFHENKPSRRTLYQTMDILRRHCMGDEPVSFQIISEQAHNFKDRRGTVLTTTRGTPPLFGHVNYEDPYFSVGLPIFSIHGNHDDPTREGGVEALAALDLLHVANLVNYFGKSNKVDDVEVNPILIQKGLTKVALYGMGSMRDERLNRMWQQKKVRFLRPLEDDGGKD--------------FFNVFVLHQNRDLGRGKKNCIHESMIPEWIDLVIWGHEHECQVGSDQT 825
            ++L IMV+TD+HLG  Y ERDP+RG DSFAAFEE+L LAK  K D +LL GDLFH+NKPSRRTL++TM+I+RR+CMG +PV FQI+S+QA NF+    TV              NYED ++S+ LPIFSIHGNHDDPTR+GG E LAALDLL V NLVNYFG+ ++VD VEV P+LI+KG TKVA+YGMGSMRDERLNRMWQ KKVRFL P+   G                 +FN+F LHQNRDLGRG KNC+HESMIPE++DLV+WGHEHEC++  D++
Sbjct:   33 DTLRIMVSTDNHLG--YAERDPIRGLDSFAAFEEVLALAKRHKCDMLLLAGDLFHDNKPSRRTLHKTMEIIRRYCMGPQPVQFQIVSDQAENFRGPTNTV--------------NYEDEHYSIDLPIFSIHGNHDDPTRDGGTEMLAALDLLAVTNLVNYFGRQDEVDKVEVAPVLIKKGSTKVAIYGMGSMRDERLNRMWQGKKVRFLEPVVAAGXXXXXXXXXXXXGVNGGWFNIFALHQNRDLGRGSKNCVHESMIPEYMDLVVWGHEHECKIEPDES 297          
BLAST of mRNA_Ecto-sp13_S_contig10360.356.1 vs. uniprot
Match: A0A7S3ZYR3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZYR3_9STRA)

HSP 1 Score: 353 bits (906), Expect = 1.510e-115
Identity = 168/264 (63.64%), Postives = 206/264 (78.03%), Query Frame = 1
Query:   34 SIMVATDSHLGRVYMERDPVRGKDSFAAFEEMLLLAKERKVDFVLLGGDLFHENKPSRRTLYQTMDILRRHCMGDEPVSFQIISEQAHNFKDRRGTVLTTTRGTPPLFGHVNYEDPYFSVGLPIFSIHGNHDDPTREGGVEALAALDLLHVANLVNYFGKSNKVDDVEVNPILIQKGLTKVALYGMGSMRDERLNRMWQQKKVRFLRPLEDDGGKDFFNVFVLHQNRDLGRGKKNCIHESMIPEWIDLVIWGHEHECQVGSDQT 825
            +IMVATDSHLG  Y +RD VRG DSFAAFEE+L LA +R  DF+LL GDLFH+NKPSRRTL++TM +LRR+ + D  V F+++S+Q  NF+                   VNYEDP+ SVGLPIFSIHGNHDDPTREGGVEALAALDLL VAN++NYFG+    D VEV+P+L++KG T+VALYG+G+MRDERLNRMWQQK+VRFLRP +      +F++FVLHQNRD+GRG+  C+HESMIP WIDLVIWGHEHECQ+   ++
Sbjct:   79 TIMVATDSHLG--YCDRDAVRGTDSFAAFEEVLRLANDRGADFLLLAGDLFHDNKPSRRTLFKTMSLLRRYALSDAAVGFEVLSDQEANFRQS-----------------VNYEDPHVSVGLPIFSIHGNHDDPTREGGVEALAALDLLSVANMLNYFGRQEHADRVEVSPVLLRKGNTRVALYGLGNMRDERLNRMWQQKRVRFLRPRDGT----YFSIFVLHQNRDVGRGRNTCVHESMIPAWIDLVIWGHEHECQIKPRES 319          
BLAST of mRNA_Ecto-sp13_S_contig10360.356.1 vs. uniprot
Match: A0A8J2X2L8_9STRA (Double-strand break repair protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X2L8_9STRA)

HSP 1 Score: 353 bits (906), Expect = 6.570e-115
Identity = 168/264 (63.64%), Postives = 206/264 (78.03%), Query Frame = 1
Query:   34 SIMVATDSHLGRVYMERDPVRGKDSFAAFEEMLLLAKERKVDFVLLGGDLFHENKPSRRTLYQTMDILRRHCMGDEPVSFQIISEQAHNFKDRRGTVLTTTRGTPPLFGHVNYEDPYFSVGLPIFSIHGNHDDPTREGGVEALAALDLLHVANLVNYFGKSNKVDDVEVNPILIQKGLTKVALYGMGSMRDERLNRMWQQKKVRFLRPLEDDGGKDFFNVFVLHQNRDLGRGKKNCIHESMIPEWIDLVIWGHEHECQVGSDQT 825
            +IMVATDSHLG  Y +RD VRG DSFAAFEE+L LA +R  DF+LL GDLFH+NKPSRRTL++TM +LRR+ + D  V F+++S+Q  NF+                   VNYEDP+ SVGLPIFSIHGNHDDPTREGGVEALAALDLL VAN++NYFG+    D VEV+P+L++KG T+VALYG+G+MRDERLNRMWQQK+VRFLRP +      +F++FVLHQNRD+GRG+  C+HESMIP WIDLVIWGHEHECQ+   ++
Sbjct:   12 TIMVATDSHLG--YCDRDAVRGTDSFAAFEEVLRLANDRGADFLLLAGDLFHDNKPSRRTLFKTMSLLRRYALSDAAVGFEVLSDQEANFRQS-----------------VNYEDPHVSVGLPIFSIHGNHDDPTREGGVEALAALDLLSVANMLNYFGRQEHADRVEVSPVLLRKGNTRVALYGLGNMRDERLNRMWQQKRVRFLRPRDGT----YFSIFVLHQNRDVGRGRNTCVHESMIPAWIDLVIWGHEHECQIKPRES 252          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10360.356.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JH84_9PHAE1.230e-14791.88Mre11_DNA_bind domain-containing protein n=2 Tax=E... [more]
A0A7S2UFV9_9STRA4.630e-12366.91Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
B8C3H0_THAPS1.320e-12264.42Mre11_DNA_bind domain-containing protein (Fragment... [more]
W7UA87_9STRA3.000e-12263.00Meiotic recombination 11 n=1 Tax=Nannochloropsis g... [more]
B7G2N6_PHATC6.620e-12062.91Predicted protein (Fragment) n=1 Tax=Phaeodactylum... [more]
B7G2N5_PHATC6.430e-11762.91Double-strand break repair protein n=2 Tax=Phaeoda... [more]
A0A4D9CWI9_9STRA4.420e-11662.27Double-strand break repair protein n=1 Tax=Nannoch... [more]
A0A7S4MXX5_9STRA4.720e-11662.28Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S3ZYR3_9STRA1.510e-11563.64Hypothetical protein (Fragment) n=1 Tax=Pelagomona... [more]
A0A8J2X2L8_9STRA6.570e-11563.64Double-strand break repair protein n=1 Tax=Pelagom... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10360contigEcto-sp13_S_contig10360:1402..5215 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score503.1
Seed ortholog evalue8.7e-140
Seed eggNOG ortholog2880.D7FN26
Preferred nameMRE11
Model size840
KEGG koko:K10865
KEGG Pathwayko03440,ko03450,ko04218,map03440,map03450,map04218
KEGG ModuleM00291,M00292,M00295
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000785,GO:0000791,GO:0000793,GO:0000794,GO:0000795,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0031974,GO:0031981,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0070013,GO:0099086
Exons7
EggNOG free text desc.manganese ion binding
EggNOG OGsCOG0420@1,KOG2310@2759
Cds size840
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03032,ko03400
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10360.356.1prot_Ecto-sp13_S_contig10360.356.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10360 1402..5215 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462526.2324593-CDS-Ecto-sp13_S_contig10360:1401..14721681462526.2324593-CDS-Ecto-sp13_S_contig10360:1401..1472Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10360 1402..1472 +
1681462526.2522836-CDS-Ecto-sp13_S_contig10360:1857..19391681462526.2522836-CDS-Ecto-sp13_S_contig10360:1857..1939Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10360 1858..1939 +
1681462526.2723742-CDS-Ecto-sp13_S_contig10360:2678..28781681462526.2723742-CDS-Ecto-sp13_S_contig10360:2678..2878Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10360 2679..2878 +
1681462526.2807484-CDS-Ecto-sp13_S_contig10360:3571..37401681462526.2807484-CDS-Ecto-sp13_S_contig10360:3571..3740Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10360 3572..3740 +
1681462526.289195-CDS-Ecto-sp13_S_contig10360:4258..43751681462526.289195-CDS-Ecto-sp13_S_contig10360:4258..4375Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10360 4259..4375 +
1681462526.297421-CDS-Ecto-sp13_S_contig10360:4697..47661681462526.297421-CDS-Ecto-sp13_S_contig10360:4697..4766Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10360 4698..4766 +
1681462526.3057482-CDS-Ecto-sp13_S_contig10360:5083..52151681462526.3057482-CDS-Ecto-sp13_S_contig10360:5083..5215Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10360 5084..5215 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10360.356.1

>prot_Ecto-sp13_S_contig10360.356.1 ID=prot_Ecto-sp13_S_contig10360.356.1|Name=mRNA_Ecto-sp13_S_contig10360.356.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=280bp
SEQDVPEPESLSIMVATDSHLGRVYMERDPVRGKDSFAAFEEMLLLAKER
KVDFVLLGGDLFHENKPSRRTLYQTMDILRRHCMGDEPVSFQIISEQAHN
FKDRRGTVLTTTRGTPPLFGHVNYEDPYFSVGLPIFSIHGNHDDPTREGG
VEALAALDLLHVANLVNYFGKSNKVDDVEVNPILIQKGLTKVALYGMGSM
RDERLNRMWQQKKVRFLRPLEDDGGKDFFNVFVLHQNRDLGRGKKNCIHE
SMIPEWIDLVIWGHEHECQVGSDQTLCLK*
back to top

mRNA from alignment at Ecto-sp13_S_contig10360:1402..5215+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10360.356.1 ID=mRNA_Ecto-sp13_S_contig10360.356.1|Name=mRNA_Ecto-sp13_S_contig10360.356.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3814bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10360:1402..5215+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCTGAGCAAGATGTCCCGGAGCCAGAGAGCCTGAGCATCATGGTGGCAAC GGATAGCCATCTCGGGCGAGTGTGAAGCGATTGTTGGAAGAACGGCCCGC ACACTCGTTGCGCCAGGCACTTGCACTGCTGCAGTTGTCGGCTTGCTGTG TGACCGTGGCCTTGCACGCTGACATCGTTATTTGTTTGGTAGATGCTTCC CCTGTGTCACGACAAGCACTCATGAAGCGAGGCGTGTCGTACAGCGTGAC CTATGCATGTGCATTCGAGTATTCGTCTTTCGTTAAGTTTTTCTTTCTGT TGAGCTTGATATTTTATTTGTACATTGTTGTGCTATTTCCAGTGGTGTTC ATACTTGGTGCCTTTGTTGGCCTTCACGTCAAAATCATGTTACCTTTTCG TCTCCCAACTATCCGTTGTTGCGCTTTTTGTTATTTTCGTCTTTTGGGTG CAACAGGTACATGGAGCGAGACCCCGTGCGGGGGAAAGACTCCTTCGCGG CCTTCGAAGAGATGCTTCTCCTCGCCAAGGAAAGAAAGGTGAAACGCGAT TAACGGTGGACGCAGTGGTGCCATCTTTTCCGCGAAGCTTTGCCGTGTTG TCCTAGTGTTTGTTTCATGGCTTGAGTGTGTCTCTCCGCAAGTTGCATGG CCCAGCGTTGGCGAGAGCAGGGCTCAGCGGTACGGGAAGCGCAAGGGTAA GTGTCTGTACGATGTTATGGCCTTGGCGAACAACACATGCTTTCCTATGC AACAATGTTGAGGAGCCATGTCTAGAGGAAGAACACGGTGTAACGCCCGT TGTATAGAACAGGACGGCTGCCTCACGACAACACTAAGCGTATGACCGAC CCTCTCAGACCCAACAAGTTATATCATGTGGTAGCGTCCGCCTCACCCTT AGGAAGACAAGGTAGTGTTCTGTGTTCACCGAAGCTTGCGGTTTGTACCG AACCCGAGAGGTTTGGTGGAGTTCCCCGAGGTTGTGTGAAACGTCCGGTG GGCAAGCTCTGTTGATGGTTACTTCTTCGATTGTCATCCTCGATACAAAG GCCATCCGCCACCATCACCATCACCACCCCCACCCCTACCACCCCCAAGA ACAACAGACAACAACATCGAAAACGATAAAGAGAACATCAACAACAACGA CAACAGCAGCAGCAACAACAACAACAACAGCAGCAAAGCAACATAAACAA CAACAGCAGCACAGCAACATGAACAACAAGAACAAAGGTAACGAGGACGG CTACCACGACAACAACAACAACCTCAGGTGGACTTCGTGCTGCTAGGAGG GGACCTCTTCCACGAGAACAAGCCCTCGCGGCGCACTCTGTACCAAACCA TGGACATCTTGCGGCGGCACTGCATGGGAGATGAGCCCGTGAGCTTCCAG ATCATCAGCGAGCAGGCGCACAACTTCAAGGACAGGCGAGGAACAGTGCT TACCACCACACGTGGAACGCCGCCGCTGTGCGTGTGTCGCGTTATTCTGC ATTTGACATGTTCTGTTTGTTGATATCGCTCGCTTGCTGTTGTTGCCCCT GATGCGGTGTCGGGAATGAATGACCTCGTTTTCTTGTGTGTATTTTTCCA TGTCTCTCGAATTTTGATTATTCATGGCTGCCATAAAGGGAAGAGAGAGT GCTGTACTCTTCTCGCATTAAGAATCGAAGGCATAGCACCGCAGGAGGGG CGGGTAGGGGACCTCAGGGAGGGGAACCCTTCTGTGTAACCACGGGTTGG GGGATACGGCACAAGTGCTGTGAGGGCTGATTTGAAGTGATTGTAAAACA ATAAAGCATTTGTAAATATATAAGCACAGACAACAATGGGCCAGTGTGTA AAATCCTTGTGCAGATGTTGTTGTTGTGATCTTAGATGGAGTCGATGGTT TGTCGAGGTCTCCTTACTGTCACTCTTGTCTGTGCAGTACTTGGCGTGAA AGCACGCGAGGCTTTTCAAGAATCTTGTCGCGATTTGGATTCCGTTCTTT CATGGGGCACTCGTGATACGTGAGAGGTATGGCAACCTCTCATCGTCGGG GTGCGATGAGACGAAGCATATTTTTTTTGTTTTTTGCGGTTTTTTTTTTG GCCCTGATTCGTTGTCACTTGTGGAGAACGACAACCCTTCAATTTTTTTG TTGCATGTGTCGTGTGACAGGTTCGGGCACGTGAATTACGAAGACCCCTA CTTTTCGGTGGGGCTCCCTATCTTCAGCATCCACGGAAATCACGACGACC CCACCCGTGAGGGAGGAGTGGAGGCCCTCGCGGCCCTCGACCTGCTGCAC GTGGCCAACCTCGTCAATTACTTCGGGAAGAGCAACAAGGTCGGCAAAGG CGCTCTTGTCGGTGCTCGTCGTCTGCTGTTGGCAATGGTGTTGACGTGCT GCAGCAGCTGCTGCTGCTGCTTTGTTGTTGTTTCTTTGCTGCTGCTGTAC CTGCTGTAGTTATCATAGCTGCTGTAGCTGCTGTAGCTGCTGAAGCTGCG TGCTGTTGCTGTCTAAGTGTGTTGCCGTGCTCTTGATGGTGTCGCGGTCT GGTTCACACTGCTGCAGCTGCTGTCGACGGTGTTGTCATCGTGCACGCTT GCGTGAGACAAAAAGCTTCTGCAGTCGTGGGACTGCCGGCTTCTGCAGCT GCTGTTGTTGCTGAGCTGGGGCTACGTCTCGGGGAGAATAGGTGGCCCGA GTTTCAAGGTTAGGGGAGCGCCTTTTAGCTAGAAACGGCCACATCTTGGT TGAGTCCAAGAAACTAGCCGAGTATATCATCCAGATTCTGGTTGCGTGAC CCCCCCGCCCTTCCCCATCTCCAACTTTCGGCCTTCGTATCCTCTCTCTG CGTACAGGTGGACGACGTAGAGGTGAACCCGATCCTCATCCAGAAAGGTT TGACCAAAGTTGCCCTCTACGGGATGGGGAGCATGAGGGACGAAAGGCTC AACCGCATGTGGCAGCAGAAGAAGGTCAGCGGCGTGTTCTCTCCCAGAAA GGGGGCGGTTTAGTTCGTTCTTTTCCTTGTGGTCGATACGCACAACCGCA GTAGAAGGTAGACCGCAGTAGAAGGTAGGCCAACGTGCTTTCTCACAGGA TGGGGCCGGTCTAGTTGGTGTTTTCTCTGTTGGACAACACGTACAACAGC AGCAGAAGCGCTTGCATCACACGCCCGGGAGGAAAAAAAACATGGCTGTC TCCTGCCTTGCGACGGCGCTGAGTCTCGGGCACGCCGTTTTTGGTTGGTT ACCCTCGCCCTTGGTTTTCGACATGGATGAATTTTGGATGATGCAGGTGA GGTTTCTCCGACCATTGGAAGACGACGGCGGCAAGGACTTTTTCAACGTT TTCGTCCTGCACCAGGTAAAAGAGGCGTTCTCTAGATGAAGGGGGGGGGG GGTACTCACGCCTTAGCTGTTAGACTATTGACCACGCGTCCTCGAAAGGA CGGACCGATGTTCCCACAGGACCGATCACCGATTGCCAATCGTTCCTTGC TACTTTGCCAACGTTTGCTCAAGAACTTTTTGTGTGCATCGACGTGTGGA ACGAGTCCGGGCCTACCCAGTCTCGCCTGCATACCTCCTCTCTGTCTGTG GTATTTATTGCTTGTAGTTACTCCGTTTACATGGTACTTTTGCTTAAAGT GCCACATGTTACCTTCTGTTTGATGCCGGCAGAACCGAGACCTCGGGCGG GGTAAGAAGAACTGTATCCACGAATCGATGATCCCCGAGTGGATAGACCT TGTCATCTGGGGACACGAGCACGAGTGCCAGGTGGGTTCAGACCAAACCT TGTGTCTTAAATGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10360:1402..5215+

>mRNA_Ecto-sp13_S_contig10360.356.1 ID=mRNA_Ecto-sp13_S_contig10360.356.1|Name=mRNA_Ecto-sp13_S_contig10360.356.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=840bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10360:1402..5215+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCTGAGCAAGATGTCCCGGAGCCAGAGAGCCTGAGCATCATGGTGGCAAC
GGATAGCCATCTCGGGCGAGTGTACATGGAGCGAGACCCCGTGCGGGGGA
AAGACTCCTTCGCGGCCTTCGAAGAGATGCTTCTCCTCGCCAAGGAAAGA
AAGGTGGACTTCGTGCTGCTAGGAGGGGACCTCTTCCACGAGAACAAGCC
CTCGCGGCGCACTCTGTACCAAACCATGGACATCTTGCGGCGGCACTGCA
TGGGAGATGAGCCCGTGAGCTTCCAGATCATCAGCGAGCAGGCGCACAAC
TTCAAGGACAGGCGAGGAACAGTGCTTACCACCACACGTGGAACGCCGCC
GCTGTTCGGGCACGTGAATTACGAAGACCCCTACTTTTCGGTGGGGCTCC
CTATCTTCAGCATCCACGGAAATCACGACGACCCCACCCGTGAGGGAGGA
GTGGAGGCCCTCGCGGCCCTCGACCTGCTGCACGTGGCCAACCTCGTCAA
TTACTTCGGGAAGAGCAACAAGGTGGACGACGTAGAGGTGAACCCGATCC
TCATCCAGAAAGGTTTGACCAAAGTTGCCCTCTACGGGATGGGGAGCATG
AGGGACGAAAGGCTCAACCGCATGTGGCAGCAGAAGAAGGTGAGGTTTCT
CCGACCATTGGAAGACGACGGCGGCAAGGACTTTTTCAACGTTTTCGTCC
TGCACCAGAACCGAGACCTCGGGCGGGGTAAGAAGAACTGTATCCACGAA
TCGATGATCCCCGAGTGGATAGACCTTGTCATCTGGGGACACGAGCACGA
GTGCCAGGTGGGTTCAGACCAAACCTTGTGTCTTAAATGA
back to top