mRNA_Ecto-sp13_S_contig10357.352.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10357.352.1
Unique NamemRNA_Ecto-sp13_S_contig10357.352.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10357.352.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10357contigEcto-sp13_S_contig10357:3945..4610 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size666
Hectar predicted targeting categoryother localisation
Exons1
Cds size612
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462525.9417026-UTR-Ecto-sp13_S_contig10357:3944..39981681462525.9417026-UTR-Ecto-sp13_S_contig10357:3944..3998Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10357 3945..3998 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462525.9517214-CDS-Ecto-sp13_S_contig10357:3998..46101681462525.9517214-CDS-Ecto-sp13_S_contig10357:3998..4610Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10357 3999..4610 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10357.352.1prot_Ecto-sp13_S_contig10357.352.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10357 3999..4610 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10357.352.1

>prot_Ecto-sp13_S_contig10357.352.1 ID=prot_Ecto-sp13_S_contig10357.352.1|Name=mRNA_Ecto-sp13_S_contig10357.352.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=204bp
MVSIVGLRGVRWGGGVLVCSGGRSGSPAEPEGRRADLIVDRCQVGMFMGR
VTLSALHVRTTCRRVITYRRGFAFHRLQRGTPLLSKSCRSLPESSCSFGA
TAILMDDCRIFVSNSVLRTSSIFHRPGASAREMNVDFFHRKPMTRQRFGV
VGPPRRLGHKERLAEIFAAHMYARHMSHSVLGEGVIYPLVRVCWIGWLIC
GVC*
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mRNA from alignment at Ecto-sp13_S_contig10357:3945..4610+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10357.352.1 ID=mRNA_Ecto-sp13_S_contig10357.352.1|Name=mRNA_Ecto-sp13_S_contig10357.352.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=666bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10357:3945..4610+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGTATAGCGGTCGGCAACAATGCGTGGGGTGCGAGACAATCGATGTGAAT
AGTGATGGTGTCGATTGTCGGTTTGCGTGGGGTCAGGTGGGGTGGTGGAG
TACTTGTGTGTTCGGGAGGGAGGTCCGGATCTCCTGCGGAACCGGAGGGA
AGAAGAGCCGATTTGATCGTTGATCGGTGTCAGGTAGGTATGTTCATGGG
ACGTGTCACACTATCTGCACTACACGTGCGGACTACATGTAGGAGGGTGA
TTACATATCGGAGGGGCTTTGCCTTCCATCGGCTTCAAAGAGGGACGCCG
TTGTTGTCGAAGTCTTGCCGCTCTCTGCCGGAGAGCTCCTGTAGTTTTGG
CGCCACGGCCATCTTAATGGATGATTGTCGTATATTTGTGTCAAATTCCG
TCTTGAGGACGTCGTCTATTTTTCACCGTCCGGGTGCTTCCGCTCGTGAA
ATGAATGTTGATTTTTTTCACAGAAAGCCGATGACCCGTCAACGCTTTGG
CGTGGTGGGTCCTCCACGGCGGCTGGGACACAAAGAAAGGCTAGCGGAGA
TTTTCGCCGCACATATGTATGCTAGGCATATGTCACACTCTGTTTTAGGC
GAGGGGGTCATTTATCCACTCGTTCGTGTGTGTTGGATTGGTTGGTTGAT
TTGTGGTGTGTGTTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10357:3945..4610+

>mRNA_Ecto-sp13_S_contig10357.352.1 ID=mRNA_Ecto-sp13_S_contig10357.352.1|Name=mRNA_Ecto-sp13_S_contig10357.352.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=612bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10357:3945..4610+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGTCGATTGTCGGTTTGCGTGGGGTCAGGTGGGGTGGTGGAGTACT
TGTGTGTTCGGGAGGGAGGTCCGGATCTCCTGCGGAACCGGAGGGAAGAA
GAGCCGATTTGATCGTTGATCGGTGTCAGGTAGGTATGTTCATGGGACGT
GTCACACTATCTGCACTACACGTGCGGACTACATGTAGGAGGGTGATTAC
ATATCGGAGGGGCTTTGCCTTCCATCGGCTTCAAAGAGGGACGCCGTTGT
TGTCGAAGTCTTGCCGCTCTCTGCCGGAGAGCTCCTGTAGTTTTGGCGCC
ACGGCCATCTTAATGGATGATTGTCGTATATTTGTGTCAAATTCCGTCTT
GAGGACGTCGTCTATTTTTCACCGTCCGGGTGCTTCCGCTCGTGAAATGA
ATGTTGATTTTTTTCACAGAAAGCCGATGACCCGTCAACGCTTTGGCGTG
GTGGGTCCTCCACGGCGGCTGGGACACAAAGAAAGGCTAGCGGAGATTTT
CGCCGCACATATGTATGCTAGGCATATGTCACACTCTGTTTTAGGCGAGG
GGGTCATTTATCCACTCGTTCGTGTGTGTTGGATTGGTTGGTTGATTTGT
GGTGTGTGTTGA
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