mRNA_Ecto-sp13_S_contig10343.340.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10343.340.1 vs. uniprot
Match: D7FRH9_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH9_ECTSI) HSP 1 Score: 208 bits (530), Expect = 5.560e-67 Identity = 107/118 (90.68%), Postives = 111/118 (94.07%), Query Frame = 1 Query: 1 SLAGTRERDEFKLMFFRNINDHTGLEPAKLYNMVQFMLYDVDNNVNVSVDETMNMLYAR--QAQMEAKLKELFGEGMRETGTQGGEIGFLEYLEAVERTQLNTFVQSSVGRAQLAKTG 348 +L G + DEFKLMFFRNINDHTGLEPAKLYNMVQFMLYDVDNNVNVSVDETMNMLYAR + +MEAKLKELFGEGMRETGTQGGEIGFLEYLEAVERTQLNTFVQSSVGRAQLAKTG Sbjct: 42 NLDGLVDWDEFKLMFFRNINDHTGLEPAKLYNMVQFMLYDVDNNVNVSVDETMNMLYARYGRTKMEAKLKELFGEGMRETGTQGGEIGFLEYLEAVERTQLNTFVQSSVGRAQLAKTG 159
BLAST of mRNA_Ecto-sp13_S_contig10343.340.1 vs. uniprot
Match: F0Y9Y6_AURAN (EF-hand domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y9Y6_AURAN) HSP 1 Score: 145 bits (367), Expect = 8.250e-42 Identity = 75/110 (68.18%), Postives = 90/110 (81.82%), Query Frame = 1 Query: 25 DEFKLMFFRNINDHTGLEPAKLYNMVQFMLYDVDNNVNVSVDETMNMLYAR--QAQMEAKLKELFGEGMRETGTQGGEIGFLEYLEAVERTQLNTFVQSSVGRAQLAKTG 348 +E LMF RNI D TGLEP++L+N+VQFM++D D N VSVDETMNMLYAR + +MEAKLKELFG+ MRETGTQGGEI FL YL AVE+TQL TF+ S+ G+AQ+AK G Sbjct: 70 EEMLLMFQRNIRDRTGLEPSQLFNVVQFMIFDQDENGLVSVDETMNMLYARYGRVRMEAKLKELFGDDMRETGTQGGEIDFLTYLRAVEKTQLMTFLNSAHGKAQVAKAG 179
BLAST of mRNA_Ecto-sp13_S_contig10343.340.1 vs. uniprot
Match: A0A7S2UTN0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UTN0_9STRA) HSP 1 Score: 147 bits (370), Expect = 3.500e-41 Identity = 75/117 (64.10%), Postives = 93/117 (79.49%), Query Frame = 1 Query: 1 SLAGTRERDEFKLMFFRNINDHTGLEPAKLYNMVQFMLYDVDNNVNVSVDETMNMLYAR--QAQMEAKLKELFGEGMRETGTQGGEIGFLEYLEAVERTQLNTFVQSSVGRAQLAKT 345 +L G + +E++LMF RNI D TGLEP+KLYNMVQFM+YD DN VSVD+TMNMLYAR +++ME KL+ELFG MRE G QGGEI FL YL+AVERTQ+NTF+ +S+G+ AKT Sbjct: 162 NLDGCVDWEEYRLMFQRNIFDRTGLEPSKLYNMVQFMIYDHDNKGLVSVDQTMNMLYARYGRSRMEQKLRELFGTDMRENGKQGGEIDFLTYLQAVERTQMNTFLNTSLGKTTAAKT 278
BLAST of mRNA_Ecto-sp13_S_contig10343.340.1 vs. uniprot
Match: A0A836CM15_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM15_9STRA) HSP 1 Score: 143 bits (361), Expect = 6.430e-40 Identity = 81/145 (55.86%), Postives = 98/145 (67.59%), Query Frame = 1 Query: 1 SLAGTRERDEFKLMFFRNINDHTGLEPAKLYNM---------------------------VQFMLYDVDNNVNVSVDETMNMLYAR--QAQMEAKLKELFGEGMRETGTQGGEIGFLEYLEAVERTQLNTFVQSSVGRAQLAKTG 348 +L G + +EF+LMF RN+ND TGLEP+KLYNM VQFM+YDV+ N VSVDETMNMLYAR +A+ME KLKELFGE MRETGTQGGEI F +YL +VERTQL TF+ +++G+A LAK G Sbjct: 111 NLDGCVDWEEFRLMFNRNVNDRTGLEPSKLYNMSFHAAKPRKKHAGLDDKPSHLLCLQAQVQFMVYDVNGNGLVSVDETMNMLYARYGRARMEVKLKELFGEEMRETGTQGGEITFTQYLASVERTQLATFLGTNMGKAHLAKVG 255
BLAST of mRNA_Ecto-sp13_S_contig10343.340.1 vs. uniprot
Match: A0A6S9HP31_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9HP31_HETAK) HSP 1 Score: 130 bits (328), Expect = 5.750e-35 Identity = 66/118 (55.93%), Postives = 89/118 (75.42%), Query Frame = 1 Query: 1 SLAGTRERDEFKLMFFRNINDHTGLEPAKLYNMVQFMLYDVDNNVNVSVDETMNMLYAR--QAQMEAKLKELFGEGMRETGTQGGEIGFLEYLEAVERTQLNTFVQSSVGRAQLAKTG 348 +L G + +EF+LMF RN+ D TGLEPA+LY+M QFM+YD N V+VD+TM+MLYAR +A+MEAKLK LFG M+E+GT+GG I F +YL AV++TQL TF+ +S+G+ K G Sbjct: 158 NLDGAVDWEEFRLMFERNVGDRTGLEPAQLYHMAQFMMYDARNTGRVTVDQTMSMLYARYGKAKMEAKLKILFGRDMKESGTEGGAITFQQYLMAVQKTQLETFLATSLGKKIAKKLG 275
BLAST of mRNA_Ecto-sp13_S_contig10343.340.1 vs. uniprot
Match: A0A812T3T1_SYMMI (Cam1 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812T3T1_SYMMI) HSP 1 Score: 121 bits (304), Expect = 3.130e-32 Identity = 61/109 (55.96%), Postives = 81/109 (74.31%), Query Frame = 1 Query: 4 LAGTRERDEFKLMFFRNINDHTGLEPAKLYNMVQFMLYDVDNNVNVSVDETMNMLYAR--QAQMEAKLKELFGEGMRETGTQGGEIGFLEYLEAVERTQLNTFVQSSVG 324 L G + EF+LMF RNI D+ GLEP+K++N+ QF++YD + N VSVDETMNMLYAR + +ME KLKELFGE M ETG +GGEI + E++ AVE+ Q+ TF ++ G Sbjct: 73 LDGCIDWGEFRLMFTRNIMDNCGLEPSKMFNLTQFLIYDHNCNGRVSVDETMNMLYARYGRTKMETKLKELFGENMHETGREGGEISYQEFIRAVEKVQVQTFWGTTQG 181
BLAST of mRNA_Ecto-sp13_S_contig10343.340.1 vs. uniprot
Match: A0A8J2X371_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X371_9STRA) HSP 1 Score: 122 bits (307), Expect = 7.300e-32 Identity = 66/125 (52.80%), Postives = 89/125 (71.20%), Query Frame = 1 Query: 4 LAGTRERDEFKLMFFRNINDHTGLEPAKLYNMVQFMLYDVDNNVNVSVDETMNMLYARQAQ--MEAKLKELFGEGMRETGTQGGEIGFLEYLEAVERTQLNTFVQSSVGRAQLAKTGTKGNQAKV 372 L G DE +LMF RNI D TGLEP++L+N+V F+++D+D + VSVDETM +LYAR + ME +LK LFG+ M+E G GGEI F+ YL AVE+TQL TF+QS+ G+A + K +GN +V Sbjct: 124 LDGCVSWDEMRLMFQRNIRDTTGLEPSQLFNVVMFLIFDLDEDGMVSVDETMELLYARYGRHKMEDRLKMLFGDDMKEEGKGGGEIDFVTYLRAVEKTQLATFLQSNYGKALVNKK--QGNPERV 246
BLAST of mRNA_Ecto-sp13_S_contig10343.340.1 vs. uniprot
Match: A0A7S4HP37_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HP37_9STRA) HSP 1 Score: 110 bits (274), Expect = 1.090e-26 Identity = 60/114 (52.63%), Postives = 79/114 (69.30%), Query Frame = 1 Query: 4 LAGTRERDEFKLMFFRNINDHTGLEPAKLYNMVQFMLYDVDNNVNVSVDETMNMLYAR--QAQMEAKLKELFG--EG--MRETGTQGGEIGFLEYLEAVERTQLNTFVQSSVGR 327 L G + +EF LMF RNI D +GLEPA Y+MVQFM+YD D+N VS+DETMNMLYAR + +ME + +LFG +G ++E G QGGEI F+ Y + VE+ Q F +S +GR Sbjct: 183 LDGVVDWEEFLLMFERNIRDTSGLEPASFYHMVQFMIYDRDDNGMVSIDETMNMLYARLGREKMETTITKLFGGDDGAPIKEVGQQGGEINFVRYWDVVEKEQTKMFSESELGR 296
BLAST of mRNA_Ecto-sp13_S_contig10343.340.1 vs. uniprot
Match: K0TBM4_THAOC (EF-hand domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TBM4_THAOC) HSP 1 Score: 102 bits (253), Expect = 4.560e-24 Identity = 56/102 (54.90%), Postives = 70/102 (68.63%), Query Frame = 1 Query: 4 LAGTRERDEFKLMFFRNINDHTGLEPAKLYNMVQFMLYDVDNNVNVSVDETMNMLYAR--QAQMEAKLKELFGE---GMRETGTQGGEIGFLEYLEAVERTQ 294 L G + DEF+L F RNI D +GLEPA Y+MVQFM+YD DNN VS+DETMNMLYAR + +ME+ + +LFG ++E G QGGEI F +Y V R Q Sbjct: 146 LDGVIDWDEFQLNFERNIRDSSGLEPASFYHMVQFMIYDRDNNGLVSIDETMNMLYARVGRTEMESVITKLFGGDDGAIKEDGRQGGEIDFQKYSSVVVREQ 247
BLAST of mRNA_Ecto-sp13_S_contig10343.340.1 vs. uniprot
Match: A0A7R9Z3Q5_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9Z3Q5_9STRA) HSP 1 Score: 89.4 bits (220), Expect = 1.180e-20 Identity = 48/92 (52.17%), Postives = 65/92 (70.65%), Query Frame = 1 Query: 70 GLEPAKLYNMVQFMLYDVDNNVNVSVDETMNMLYAR--QAQMEAKLKELFG--EG--MRETGTQGGEIGFLEYLEAVERTQLNTFVQSSVGR 327 GLEPA Y+MVQFM+YD D+N VS+DETMNMLYAR + +ME + +LFG +G ++E G QGGEI F+ Y + V + Q+ F +S +GR Sbjct: 1 GLEPASFYHMVQFMIYDRDDNGMVSIDETMNMLYARLGREKMETTITKLFGGDDGAPIKEVGQQGGEIDFVRYWDVVAKEQMKMFNESELGR 92 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10343.340.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10343.340.1 >prot_Ecto-sp13_S_contig10343.340.1 ID=prot_Ecto-sp13_S_contig10343.340.1|Name=mRNA_Ecto-sp13_S_contig10343.340.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=126bp SLAGTRERDEFKLMFFRNINDHTGLEPAKLYNMVQFMLYDVDNNVNVSVDback to top mRNA from alignment at Ecto-sp13_S_contig10343:3664..5792- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10343.340.1 ID=mRNA_Ecto-sp13_S_contig10343.340.1|Name=mRNA_Ecto-sp13_S_contig10343.340.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2129bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10343:3664..5792- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10343:3664..5792- >mRNA_Ecto-sp13_S_contig10343.340.1 ID=mRNA_Ecto-sp13_S_contig10343.340.1|Name=mRNA_Ecto-sp13_S_contig10343.340.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=378bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10343:3664..5792- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |