mRNA_Ecto-sp13_S_contig10340.338.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10340.338.1 vs. uniprot
Match: A0A6H5L219_9PHAE (Holocytochrome c-type synthase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L219_9PHAE) HSP 1 Score: 489 bits (1260), Expect = 4.470e-169 Identity = 327/376 (86.97%), Postives = 332/376 (88.30%), Query Frame = 1 Query: 1 MAGSSSECPVQHAPKESSSTPAASVAAGNELTASTEPEQASGRRWSSRVAAWLPFRQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-GCPVQHGSTTTSTAAPAEGLGRVWGYVTGSIGGVGGXXXXXXXXXXXPASSELYNARNNEYVYGQEVAAGQEVPLSTSRQRSSIPKAEFNPDHQPQKEAEKWVYPSEQQYYNAIKRKGYKASAADMPSTLAIHNAVNEKGWEMVQEWERAHAEAAXXXXXXXXXXXXXXXXIPA-PKLLRFTGRPQDTSPKAWVKSTLLGYRPPFDRHDWVVKRADGTEARYVIDFYAGKAPPGSSMPVAMHLDVRPALDSYD 1122 MAG SS CPVQHAPKESS TPAA+ AAGNE TASTE EQASGRRWSSRVAAWLPFRQG XXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXX GCPV+HGS TSTAAPAEGLGRVWGY+TGSIGG GG PA+ ELYNARNNEYVYGQEVAAGQEVPLSTSRQRSSIPKAEFNPDHQPQKEAEKWVYPSEQQYYNAIKRKGYKASAADMPSTLAIHNAVNEKGWEMVQEWERA XXXXXXXXXXXXXXX +PA PKLLRFTGRPQDTSPKAWVKSTLLGYRPPFDRHDWVVKRADGTEARYVIDFYAGKAPPGSSMPVAMHLDVRPALDSYD Sbjct: 1 MAGRSSGCPVQHAPKESSPTPAATAAAGNESTASTESEQASGRRWSSRVAAWLPFRQGGXXXXXXXXXXXXXXXXXXXXXXVQGSAAWRGTKEEHXXXXXXXXXXXXXXXXXXXXXXXXXXXSGCPVEHGSAATSTAAPAEGLGRVWGYLTGSIGGAGGSGEVSSATAPAPAAPELYNARNNEYVYGQEVAAGQEVPLSTSRQRSSIPKAEFNPDHQPQKEAEKWVYPSEQQYYNAIKRKGYKASAADMPSTLAIHNAVNEKGWEMVQEWERARXXXXXXXXXXXXXXXXXXXGVPAAPKLLRFTGRPQDTSPKAWVKSTLLGYRPPFDRHDWVVKRADGTEARYVIDFYAGKAPPGSSMPVAMHLDVRPALDSYD 376
BLAST of mRNA_Ecto-sp13_S_contig10340.338.1 vs. uniprot
Match: D8LGP6_ECTSI (Holocytochrome c-type synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGP6_ECTSI) HSP 1 Score: 424 bits (1089), Expect = 1.110e-142 Identity = 324/379 (85.49%), Postives = 327/379 (86.28%), Query Frame = 1 Query: 103 TEPEQASGRRWSSRVAAWLPFRQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-GCPVQHGSTTTSTAAPAEGLGRVWGYVTGSIGGVGGXXXXXXXXXXXPASSELYNARNNEYVYGQEVAAGQEVPLSTSRQRSSIPKAEFNPDHQPQKEAEKWVYPSEQQYYNAIKRKGYKASAADMPSTLAIHNAVNEKGWEMVQEWERAHAEAAXXXXXXXXXXXXXXXX--------------------------------------IPAPKLLRFTGRPQDTSPKAWVKSTLLGYRPPFDRHDWVVKRADGTEARYVIDFYAGKAPPGSSMPVAMHLDVRPALDSYD 1122 TEPEQ SG RWSSRVAAWLPFRQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GCPVQHGS TSTAAPA GLGRVWGY+TGSIGG XXXXXXXXXXX + ELYNARNNEYVYGQEVAAGQEVPLSTSRQRSSIPKAEFNPDHQPQKEAEKWVYPSEQQYYNAIKRKGYKASAADMPSTLAIHNAVNEKGWEMVQEWERAHAEAAXXXXXXXXXXXXXXXX +PAPKL RFTGRPQDTSPKAWVKSTL GYRPPFDRHDWVVKRADGTEARYVIDFYAGKAPPGSSMPVAMHLDVRPALDSYD Sbjct: 21 TEPEQGSGGRWSSRVAAWLPFRQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCPVQHGSAATSTAAPAGGLGRVWGYLTGSIGGAXXXXXXXXXXXXXXEAPELYNARNNEYVYGQEVAAGQEVPLSTSRQRSSIPKAEFNPDHQPQKEAEKWVYPSEQQYYNAIKRKGYKASAADMPSTLAIHNAVNEKGWEMVQEWERAHAEAAXXXXXXXXXXXXXXXXXXXXXXEGFRGGEGLHPGAPQIGTPPXXXXXXXXXXVGVPAPKLFRFTGRPQDTSPKAWVKSTLFGYRPPFDRHDWVVKRADGTEARYVIDFYAGKAPPGSSMPVAMHLDVRPALDSYD 399
BLAST of mRNA_Ecto-sp13_S_contig10340.338.1 vs. uniprot
Match: A0A835ZPE3_9STRA (Holocytochrome c-type synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZPE3_9STRA) HSP 1 Score: 203 bits (516), Expect = 1.130e-59 Identity = 109/200 (54.50%), Postives = 128/200 (64.00%), Query Frame = 1 Query: 523 LYNARNNEYVYGQEVAAGQEVPLSTSRQRSSIPKAEFNPDHQPQKEAEKWVYPSEQQYYNAIKRKGYKASAADMPSTLAIHNAVNEKGWEMVQEWERAHAEAAXXXXXXXXXXXXXXXXIPAPKLLRFTGRPQDTSPKAWVKSTLLGYRPPFDRHDWVVKRADGTEARYVIDFYAGKAPPGSSMPVAMHLDVRPALDSYD 1122 + + ++E V G Q VPLST+RQ S+IPK E P HQP+ A WVYPSEQQY+NA+KRKG++A D+P LAIHNAVNE+GW V+EWE PKL F GRP D SPKAW K+ +LGY+PPFDRHDWVV+ A G E RYVIDFYAGK P PVA+HLDVRPALDS D Sbjct: 1 MASTNSDESVSGGGCPVKQTVPLSTARQCSTIPKGEVTPQHQPEG-ANVWVYPSEQQYFNAMKRKGWEAQEQDVPIVLAIHNAVNEQGWSKVREWEAMRGGD--------------------PKLKEFRGRPNDISPKAWFKTNVLGYKPPFDRHDWVVESA-GREVRYVIDFYAGKGTP--ERPVALHLDVRPALDSAD 176
BLAST of mRNA_Ecto-sp13_S_contig10340.338.1 vs. uniprot
Match: W7TBT6_9STRA (Holocytochrome c-type synthase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TBT6_9STRA) HSP 1 Score: 203 bits (516), Expect = 2.270e-58 Identity = 110/204 (53.92%), Postives = 126/204 (61.76%), Query Frame = 1 Query: 508 PASSELYNARNNEYVYGQEVAAGQEVPLSTSRQRSSIPKAEFNPDHQPQKEAEKWVYPSEQQYYNAIKRKGYKASAADMPSTLAIHNAVNEKGWEMVQEWERAHAEAAXXXXXXXXXXXXXXXXIPAPKLLRFTGRPQDTSPKA-WVKSTLLGYRPPFDRHDWVVKRADGTEARYVIDFYAGKAPPGSSMPVAMHLDVRPALDS 1116 P SS N NNE Y Q Q VPLSTSR+ SSIPK++F P HQP+ +KWVYPSEQQY+NA+K KG+ D+ LAIHNAVNE+GW V EWE PKL RF GRPQD SPKA W+ + GY PFDRHDWVV+RADG+E RYVIDFY G+ PV+MHLDVRPALDS Sbjct: 73 PPSSSPVNPLNNERQYSQVPQPSQAVPLSTSREISSIPKSDFTPKHQPKWAGDKWVYPSEQQYFNAMKSKGFDPLPQDVGIILAIHNAVNEQGWRKVLEWEGGLGSTP-------------------PKLKRFMGRPQDLSPKAAWL--WMCGYNKPFDRHDWVVERADGSEVRYVIDFYTGQTDVKDPKPVSMHLDVRPALDS 255
BLAST of mRNA_Ecto-sp13_S_contig10340.338.1 vs. uniprot
Match: A0A7S3HNG9_9STRA (Holocytochrome c-type synthase n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HNG9_9STRA) HSP 1 Score: 196 bits (499), Expect = 2.450e-56 Identity = 102/204 (50.00%), Postives = 127/204 (62.25%), Query Frame = 1 Query: 511 ASSELYNARNNEYVYGQEVAAGQEVPLSTSRQRSSIPKAEFNPDHQPQKEAEKWVYPSEQQYYNAIKRKGYKASAADMPSTLAIHNAVNEKGWEMVQEWERAHAEAAXXXXXXXXXXXXXXXXIPAPKLLRFTGRPQDTSPKAWVKSTLLGYRPPFDRHDWVVKRADGTEARYVIDFYAG--KAPPGSSMPVAMHLDVRPALDS 1116 +++ LYN N++V+ Q A Q+ LS R S+IPK +F P+HQP K EKWVYPSEQQYYNA+KRKGY S AD+P+ L IHN VNEKGW V+EWE P PKL +F G+P SPKA + + ++GY PFDRHDW+V+R DG E RYVIDFY G P PV+++LDVRPA DS Sbjct: 57 SNNPLYNTNANDFVFDQSRTADQKANLSVKRATSTIPKGDFTPEHQP-KATEKWVYPSEQQYYNAMKRKGYNPSEADIPAVLFIHNHVNEKGWSQVKEWEAYSG-------------------FPNPKLKKFMGKPTQLSPKARLLN-MIGYSKPFDRHDWIVERPDGQEVRYVIDFYGGARNINPSKPQPVSIYLDVRPAADS 239
BLAST of mRNA_Ecto-sp13_S_contig10340.338.1 vs. uniprot
Match: A0A7S4DXX3_9EUKA (Holocytochrome c-type synthase n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4DXX3_9EUKA) HSP 1 Score: 174 bits (441), Expect = 9.230e-49 Identity = 95/197 (48.22%), Postives = 120/197 (60.91%), Query Frame = 1 Query: 529 NARNNEYVYGQEVAAGQEVPLSTSRQRSSIPKAEFNPDHQPQKEAEKWVYPSEQQYYNAIKRKGYKASAADMPSTLAIHNAVNEKGWEMVQEWERAHAEAAXXXXXXXXXXXXXXXXIPAPKLLRFTGRPQDTSPKAWVKSTLLGYRPPFDRHDWVVKRADGTEARYVIDFYAGKAPPGSSMPVAMHLDVRPALDSY 1119 N N Q + GQ +PL T R S+IPK +F P HQ + +A W YPS QQ+YNA+KRKGY+ DM S +AIHN VNEK W+ V EWE+ H + P P+L +F+GR D S KA + +T +GYRPPFDRHDWVV R G + RYVIDFY G P + MP+++HLDVRPA DS+ Sbjct: 16 NPSNQMPSLSQMPSRGQRMPLPTHRVESTIPKGDFKPSHQLEGKAN-WTYPSPQQFYNAMKRKGYQPKEEDMQSVVAIHNTVNEKTWKKVMEWEKMHLDKC-----------------PNPRLEKFSGRANDQSLKARI-NTWMGYRPPFDRHDWVVDRC-GKKVRYVIDFYTG--PSMTGMPLSIHLDVRPAADSF 190
BLAST of mRNA_Ecto-sp13_S_contig10340.338.1 vs. uniprot
Match: A0A7S0WSL6_9CHLO (Holocytochrome c-type synthase n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0WSL6_9CHLO) HSP 1 Score: 172 bits (437), Expect = 1.340e-47 Identity = 99/196 (50.51%), Postives = 119/196 (60.71%), Query Frame = 1 Query: 535 RNNEYVYGQEVAAG--QEVPLSTSRQRSSIPKAEFNPDHQPQKEAEKWVYPSEQQYYNAIKRKGYKASAADMPSTLAIHNAVNEKGWEMVQEWERAHAEAAXXXXXXXXXXXXXXXXIPAPKLLRFTGRPQDTSPKAWVKSTLLGYRPPFDRHDWVVKRADGTEARYVIDFYAGKAPPGSSMPVAMHLDVRPALDS 1116 +NN + Q AA Q +PLS R S+IPK EF P HQ K WVYPSEQ +YNA+KRKG++ + DMPS +AIHNAVNE+ W + WE HA A P+P L +F GRP+D SPKA + + LGY+ PFDRHDW V R G E RYVIDFY PG P+AMHLDVRPALD+ Sbjct: 43 KNNMFFPKQIQAASSDQRIPLSIERVASTIPKDEFTPSHQ-SKTDPVWVYPSEQMFYNAMKRKGWQPNEVDMPSVVAIHNAVNERCWHEILTWEHLHASAC-----------------PSPTLNKFEGRPKDYSPKARLLN-WLGYKLPFDRHDWYVNRC-GEEVRYVIDFYNAAPQPG--QPIAMHLDVRPALDT 216
BLAST of mRNA_Ecto-sp13_S_contig10340.338.1 vs. uniprot
Match: A0A2R5GNK2_9STRA (Holocytochrome c-type synthase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GNK2_9STRA) HSP 1 Score: 170 bits (430), Expect = 5.760e-46 Identity = 93/188 (49.47%), Postives = 115/188 (61.17%), Query Frame = 1 Query: 559 QEVAAGQEVPLSTSRQRSSIPKAEFNPDHQPQ-KEAEKWVYPSEQQYYNAIKRKGYKASAADMPSTLAIHNAVNEKGWEMVQEWERAHAEAAXXXXXXXXXXXXXXXXIPAPKLLRFTGRPQDTSPKAWVKSTLLGYRPPFDRHDWVVKRADGTEARYVIDFYAGKAPPGSSMPVAMHLDVRPALDSY 1119 Q+ GQ PLST+R S IPK EF+PDHQ +E+ W+YPSEQQ++NA+KRKG+K DM LAIHN VN+K W V ++E H E PKL+RF G+P++ SPKA V+S GY PFDRHDW+V R GTE RYVIDFY G V+M+LD RPALDS+ Sbjct: 78 QKAWPGQRFPLSTNRVESVIPKGEFSPDHQKHSRESSSWMYPSEQQFFNAMKRKGWKPREEDMRIVLAIHNHVNDKAWSEVSKYESMHPECD------------------CPKLVRFMGKPKNLSPKATVRS-WFGYAKPFDRHDWIVDRC-GTEVRYVIDFYQGAQTSNPGEVVSMYLDARPALDSW 245
BLAST of mRNA_Ecto-sp13_S_contig10340.338.1 vs. uniprot
Match: A0A1E1GHU4_9CRYP (Holocytochrome c-type synthase n=1 Tax=Roombia sp. NY0200 TaxID=1263497 RepID=A0A1E1GHU4_9CRYP) HSP 1 Score: 168 bits (426), Expect = 1.650e-45 Identity = 91/199 (45.73%), Postives = 112/199 (56.28%), Query Frame = 1 Query: 526 YNARNNEYVYGQEVAAGQEVPLSTSRQRSSIPKAEFNPDHQPQKEAEKWVYPSEQQYYNAIKRKGYKASAADMPSTLAIHNAVNEKGWEMVQEWERAHAEAAXXXXXXXXXXXXXXXXIPAPKLLRFTGRPQDTSPKAWVKSTLLGYRPPFDRHDWVVKRADGTEARYVIDFYAGKAPPGSS--MPVAMHLDVRPALDS 1116 +N NN Q+ A Q PL R SSIP E KWVYPSEQ ++NA+K+KG+ S DMP +AIHN NEK W + WE+ A +P PKL+RF GRP D SPKAW S ++GY PFDRHDW+V+R + + RYVIDFY G P +S P+AMHLDVRPA+DS Sbjct: 84 FNPNNNMSAPNQQPAPDQRFPLPRERVVSSIPNGSVAD------EEAKWVYPSEQMFFNAMKKKGWSPSEKDMPLVVAIHNTTNEKAWNEILRWEQF---ALTGSKGAPTDAASSTPPVPPPKLVRFQGRPNDLSPKAWFLS-MIGYSRPFDRHDWLVERTNKEQVRYVIDFYEGGTVPSTSRRQPIAMHLDVRPAVDS 272
BLAST of mRNA_Ecto-sp13_S_contig10340.338.1 vs. uniprot
Match: A0A7S0WA24_9CRYP (Holocytochrome c-type synthase n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0WA24_9CRYP) HSP 1 Score: 165 bits (417), Expect = 3.130e-45 Identity = 96/197 (48.73%), Postives = 120/197 (60.91%), Query Frame = 1 Query: 535 RNNEYVYGQEVAAG--QEVPLSTSRQRSSIPKAEFNPDHQPQK-EAEKWVYPSEQQYYNAIKRKGYKASAADMPSTLAIHNAVNEKGWEMVQEWER-AHAEAAXXXXXXXXXXXXXXXXIPAPKLLRFTGRPQDTSPKAWVKSTLLGYRPPFDRHDWVVKRADGTEARYVIDFYAGKAPPGSSMPVAMHLDVRPALD 1113 RNN G+ G Q PLST+R SSIPK +F P HQ + + E+WVYPSEQ ++NA++RKG+ DM S +A+HNAVNE+ W V WER H E P P+L+RF GRP+D SP+A + S LLGY+ PFDRHDW V R G + RYVIDFY GK PP PV+ ++VRPALD Sbjct: 4 RNNMRKGGESQYPGLNQSRPLSTARVESSIPKDDFTPAHQAENSQKERWVYPSEQMFFNAMQRKGWNPKEDDMSSVVALHNAVNEQTWNEVLRWERDLHPEC------------------PQPRLVRFYGRPKDFSPRARIFS-LLGYKLPFDRHDWTVDRC-GKQVRYVIDFYHGK-PPADGRPVSFFIEVRPALD 179 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10340.338.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10340.338.1 >prot_Ecto-sp13_S_contig10340.338.1 ID=prot_Ecto-sp13_S_contig10340.338.1|Name=mRNA_Ecto-sp13_S_contig10340.338.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=429bp MAGSSSECPVQHAPKESSSTPAASVAAGNELTASTEPEQASGRRWSSRVAback to top mRNA from alignment at Ecto-sp13_S_contig10340:704..3816- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10340.338.1 ID=mRNA_Ecto-sp13_S_contig10340.338.1|Name=mRNA_Ecto-sp13_S_contig10340.338.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3113bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10340:704..3816- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10340:704..3816- >mRNA_Ecto-sp13_S_contig10340.338.1 ID=mRNA_Ecto-sp13_S_contig10340.338.1|Name=mRNA_Ecto-sp13_S_contig10340.338.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1287bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10340:704..3816- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |