mRNA_Ecto-sp13_S_contig1034.335.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1034.335.1 vs. uniprot
Match: D7FR68_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FR68_ECTSI) HSP 1 Score: 494 bits (1272), Expect = 1.240e-174 Identity = 258/264 (97.73%), Postives = 260/264 (98.48%), Query Frame = 1 Query: 1 MANFATLESLKKDDEEEKKGNAYYAGGARGAGRGGSGLNVMGPPPXXXXXXXXXNGDPHVQEIFRRAETGGPPGEDGGNERTITITMYNGGFTVDDGPFRRLDDPANKDFLKDLASGLVPKELEAGATPGKGTDVKLVDKQNEDYVAPPYVAFGGDGQTMGASTVAEGAVMTATGAPEASEAPEVDASQPSTTLQIRLHDGRRVRAQLNMHHTVRHIQAIIAREGAGGGSYMLMAGYPPAPLSDSSQTLEQAGLRGASITQKLA 792 MANFATLESLKK DEEEKKGNAYYAGGARGAGRGGSGLNVMGPPP XXXXXX NGDPHVQEIFRRAETGGPPGEDGGNERTITITMYNGGFTVDDGPFRRLDDPANKDFLKDLASGLVPKELEAGATPGKGTDVKLVDKQNEDYVAPPYVAFGGDGQTMGASTVAEGAVMTATGAP+ASEAPEVDASQPSTTLQIRLHDGRRVRAQLNMHHTVRHIQAIIAREGAGGGSYMLMAGYPPAPLSDSSQTLEQAGL+GASITQKLA Sbjct: 1 MANFATLESLKKGDEEEKKGNAYYAGGARGAGRGGSGLNVMGPPPDDXXXXXXGNGDPHVQEIFRRAETGGPPGEDGGNERTITITMYNGGFTVDDGPFRRLDDPANKDFLKDLASGLVPKELEAGATPGKGTDVKLVDKQNEDYVAPPYVAFGGDGQTMGASTVAEGAVMTATGAPDASEAPEVDASQPSTTLQIRLHDGRRVRAQLNMHHTVRHIQAIIAREGAGGGSYMLMAGYPPAPLSDSSQTLEQAGLKGASITQKLA 264
BLAST of mRNA_Ecto-sp13_S_contig1034.335.1 vs. uniprot
Match: A0A835ZC87_9STRA (SEP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC87_9STRA) HSP 1 Score: 214 bits (546), Expect = 1.570e-64 Identity = 120/210 (57.14%), Postives = 149/210 (70.95%), Query Frame = 1 Query: 178 VQEIFRRA--ETGGPPGEDGGNERTITITMYNGGFTVDDGPFRRLDDPANKDFLKDLASGLVPKELEAGATPGKG-TDVKLVDKQNEDYVAPP---YVAFGGDGQTMGASTVAEGAVMTATGAPEASEAPEVDASQPSTTLQIRLHDGRRVRAQLNMHHTVRHIQAIIAREGAGGGSYMLMAGYPPAPLSDSSQTLEQAGLRGASITQKL 789 VQ+IF+RA + GE+G + + ITI MY GFTV+DGPFRRLDDPAN+ FL+DL G+VP+EL G G+G VKL D++NEDYV PP YV FGG+GQTMG+ST A + GA E P VD +QP TTLQIRL DGRR+RA+LN+ HTVR +QA I EGAG ++L+ GYPPA ++D SQTL+ AGL GA +TQKL Sbjct: 59 VQDIFQRASRQEAAEGGEEGADSQ-ITIFMYRQGFTVNDGPFRRLDDPANEPFLRDLGKGIVPRELADGLGKGRGEVHVKLADRRNEDYVPPPTPAYVPFGGEGQTMGSSTAPAAAAIA--GADEVGAPPVVDDAQPVTTLQIRLADGRRLRARLNLSHTVRDVQAFIHSEGAGATPFVLLGGYPPAVITDFSQTLQAAGLAGAQLTQKL 265
BLAST of mRNA_Ecto-sp13_S_contig1034.335.1 vs. uniprot
Match: A0A7S2FCW2_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FCW2_9STRA) HSP 1 Score: 211 bits (536), Expect = 1.430e-63 Identity = 114/235 (48.51%), Postives = 156/235 (66.38%), Query Frame = 1 Query: 100 GGSGLNVMGPPPXXXXXXXXXNGDPHVQEIFRRAE----TGGPPGEDGGNERTITITMYNGGFTVDDGPFRRLDDPANKDFLKDLASGLVPKELEAGATPGKGTDVKLVDKQNEDYVAPPYVAFGGDGQTMGASTVAEGAVMTATGAPEASEAPEVDASQPSTTLQIRLHDGRRVRAQLNMHHTVRHIQAIIAREGAGGGSYMLMAGYPPAPLSDSSQTLEQAGLRGASITQKLA 792 GGSGLNV+ P +GDP ++E+ +A+ +GG G G +RTIT+ Y GFTVDDGP R L+DPANK F+ ++ G VP EL+ + PG DV+L DK+ E+YV P Y A+ G GQ++G +T + EA+EAP VD ++P + +RLH+G+R+RA LNM+HT+RH+QA+I+ EGAG Y+LM+GYPPA L+D SQT+E AGL GA +TQKLA Sbjct: 2 GGSGLNVIDP------SQASSSGDP-MEELVAKAQAQGASGGEAGSGGAGKRTITV--YANGFTVDDGPLRDLEDPANKKFIMEMMQGRVPTELQDPSAPGD-VDVQLHDKRGEEYVKPAYTAYSGQGQSIGGATEVSAGALAGAADAEATEAPVVDDAKPKAVIAVRLHNGKRIRATLNMNHTIRHLQALISAEGAGAAPYVLMSGYPPAQLTDFSQTIEAAGLNGAQVTQKLA 226
BLAST of mRNA_Ecto-sp13_S_contig1034.335.1 vs. uniprot
Match: D0N5D2_PHYIT (Uncharacterized protein n=19 Tax=Phytophthora TaxID=4783 RepID=D0N5D2_PHYIT) HSP 1 Score: 207 bits (527), Expect = 8.980e-62 Identity = 129/272 (47.43%), Postives = 167/272 (61.40%), Query Frame = 1 Query: 1 MANFATLESLKKDDEEEKKG---NAYYAGGARGAGRGGSGLNVMGPPPXXXXXXXXXNGDPHVQEIFRRAETGGPPGEDGGN--ERTITITMYNGGFTVDDGPFRRLDDPANKDFLKDLASGLVPKELEAGATPGKGTDVKLVDKQNEDYVAPP---YVAFGGDGQTMGASTVAEGAVMTATGAPEASEAPEVDASQPSTTLQIRLHDGRRVRAQLNMHHTVRHIQAIIAREGAGGGSYMLMAGYPPAPLS-DSSQTLEQAGLRGASITQKL 789 M N L SL +++ + G N YYAGGA G GGSGL+V+GP GD HV I RA+ G + IT Y GFTV+DGP+R DPAN+ FL+ L SG VP+ELE G + ++ LVDK+ EDYVAPP Y AF G+GQ+MG++T A AV+ P +E P +D +PSTTLQIRLH+G+R+R LN+ HTVR + AII AG Y L+AG+PP P+S D +QT+EQAGL+GA++TQKL Sbjct: 1 MVNIVGLSSLNNRNDDREDGDQPNQYYAGGASDRG-GGSGLSVIGP----------GGGDDHVANIIGRAQQDARAAAAAGESTQPRHVITFYREGFTVNDGPYRARSDPANRPFLEALESGHVPQELE-GENRHEPVEISLVDKRQEDYVAPPPPAYTAFSGEGQSMGSTTYAAEAVIQGDAVP--AERPVIDDKKPSTTLQIRLHNGQRLRETLNLDHTVRDLHAIIQLNDAGAQPYTLLAGFPPRPVSTDLAQTIEQAGLKGAAVTQKL 258
BLAST of mRNA_Ecto-sp13_S_contig1034.335.1 vs. uniprot
Match: A0A3F2RLP8_9STRA (Uncharacterized protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RLP8_9STRA) HSP 1 Score: 206 bits (523), Expect = 3.800e-61 Identity = 131/273 (47.99%), Postives = 168/273 (61.54%), Query Frame = 1 Query: 1 MANFATLESLK-KDDEEEKKG---NAYYAGGARGAGRGGSGLNVMGPPPXXXXXXXXXNGDPHVQEIFRRAETGGPPGEDGGN--ERTITITMYNGGFTVDDGPFRRLDDPANKDFLKDLASGLVPKELEAGATPGKGTDVKLVDKQNEDYVAPP---YVAFGGDGQTMGASTVAEGAVMTATGAPEASEAPEVDASQPSTTLQIRLHDGRRVRAQLNMHHTVRHIQAIIAREGAGGGSYMLMAGYPPAPLS-DSSQTLEQAGLRGASITQKL 789 MAN L SL ++D++ + G N YYAGGA G GGSGL+V+GP GD HV I RA+ GG + IT Y GFTV+DGP+R DPAN+ FL+ L G VP+ELE G + ++ LVDK+ EDYVAPP Y AF G+GQTMG++T + AV+ P SE P +D +P TTLQIRLH+G+R+R LN+ HT+R + AII AG Y L+AG+PP P+S D QT+EQAGL+GA+ITQKL Sbjct: 1 MANIVGLSSLNNRNDDDREDGAQPNQYYAGGATDRG-GGSGLSVIGP--------GGGEGD-HVANIIGRAQQDARAAAAGGESVQPHHIITFYREGFTVNDGPYRARSDPANRSFLEALERGHVPQELE-GENRNEPVEISLVDKREEDYVAPPPPAYTAFSGEGQTMGSTTYSADAVIQGAAVP--SERPVIDDKKPKTTLQIRLHNGQRLRETLNLEHTIRDLHAIIQLNDAGAQPYTLLAGFPPRPVSTDLDQTIEQAGLKGAAITQKL 260
BLAST of mRNA_Ecto-sp13_S_contig1034.335.1 vs. uniprot
Match: A0A225VY11_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VY11_9STRA) HSP 1 Score: 201 bits (512), Expect = 1.540e-59 Identity = 124/272 (45.59%), Postives = 167/272 (61.40%), Query Frame = 1 Query: 1 MANFATLESLKKDDEEEKKG---NAYYAGGARGAGRGGSGLNVMGPPPXXXXXXXXXNGDPHVQEIFRRAETGGPPGEDGGN--ERTITITMYNGGFTVDDGPFRRLDDPANKDFLKDLASGLVPKELEAGATPGKGTDVKLVDKQNEDYVAPP---YVAFGGDGQTMGASTVAEGAVMTATGAPEASEAPEVDASQPSTTLQIRLHDGRRVRAQLNMHHTVRHIQAIIAREGAGGGSYMLMAGYPPAPLS-DSSQTLEQAGLRGASITQKL 789 M N L SL +D+++ ++G N YYAGGA G GGSGL+V+GP D HV I RA+ G + I Y GFTV+DGP+R DPAN+ FL+ L G VP+ELE G + ++ LVDK+ EDYVAPP Y AF G+GQTMG++T + AV+ G A+E P +D + +TTLQIRLH+G+R+R LN+ HT+R + AI+ AG Y L+AG+PP P+S D +QT+EQAGL+GA++TQKL Sbjct: 1 MVNIVGLSSLNRDNDQREEGEQPNQYYAGGASDRG-GGSGLSVIGP-----------ESDDHVANIIGRAQQDAMAAAAAGESPQPGHVIAFYREGFTVNDGPYRARSDPANRPFLEALERGHVPQELE-GENRNEPVEISLVDKRQEDYVAPPSPAYTAFSGEGQTMGSTTYSAEAVIQ--GDTVAAERPVIDDKKATTTLQIRLHNGQRLRETLNLEHTIRDLHAILQLNDAGAQPYTLLAGFPPRPVSTDLNQTIEQAGLKGAAVTQKL 257
BLAST of mRNA_Ecto-sp13_S_contig1034.335.1 vs. uniprot
Match: A0A3M6VLM0_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VLM0_9STRA) HSP 1 Score: 197 bits (501), Expect = 4.920e-56 Identity = 123/274 (44.89%), Postives = 169/274 (61.68%), Query Frame = 1 Query: 1 MANFATLESLKKDDEEEKKG-----NAYYAGGARGAGRGGSGLNVMGPPPXXXXXXXXXNGDPHVQEIFRRAETGGPPGEDGGN--ERTITITMYNGGFTVDDGPFRRLDDPANKDFLKDLASGLVPKELEAGATPGKGTDVKLVDKQNEDYVAPP---YVAFGGDGQTMGASTVAEGAVMTATGAPEASEAPEVDASQPSTTLQIRLHDGRRVRAQLNMHHTVRHIQAIIAREGAGGGSYMLMAGYPPAPLS-DSSQTLEQAGLRGASITQKL 789 M N L SL ++++++ N YYAGGA G GGSGL+V+GP NG+ HV I RA+ G+ + IT Y GFTV+DGP+R DP+N+ FL+ L G VP+ELE G + ++ LVDK+ E+YVAPP Y AF G+GQTMG+ST A A++ G + +E P +D +P+TTLQIRLH+G+R+R LN+ H++R + AII AG Y L+AG+PP P+S D QT+EQAGL+GA++TQKL Sbjct: 1 MVNIVGLSSLNGRNDDDRRQDRDQPNQYYAGGASDRG-GGSGLSVIGP----------GNGNDHVANIIGRAQQDARAAVVAGDSTQPRHVITFYREGFTVNDGPYRARSDPSNRLFLEALEQGHVPQELE-GENRNEPVEISLVDKREENYVAPPPPAYTAFSGEGQTMGSSTYAAEAMIQ--GDAQVTERPVIDDKKPTTTLQIRLHNGQRLRETLNLDHSIRDLHAIIRLNDAGTQPYTLLAGFPPRPVSTDLDQTIEQAGLKGAAVTQKL 260
BLAST of mRNA_Ecto-sp13_S_contig1034.335.1 vs. uniprot
Match: F0WZW6_9STRA (Uncharacterized protein AlNc14C446G11707 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WZW6_9STRA) HSP 1 Score: 192 bits (488), Expect = 6.990e-56 Identity = 116/272 (42.65%), Postives = 160/272 (58.82%), Query Frame = 1 Query: 1 MANFATLESLKKDDEEE---KKGNAYYAGGARGAGRGGSGLNVMGPPPXXXXXXXXXNGD--PHVQEIFRRAETGGPPGEDGGNERTITITMYNGGFTVDDGPFRRLDDPANKDFLKDLASGLVPKELEAGATPGKGTDVKLVDKQNEDYVAPP---YVAFGGDGQTMGASTVAEGAVMTATGAPEASEAPEVDASQPSTTLQIRLHDGRRVRAQLNMHHTVRHIQAIIAREGAGGGSYMLMAGYPPAPLS-DSSQTLEQAGLRGASITQKL 789 M N +L SL++DDE + ++ NAYYAGG G GSGL+V+GP NG+ H+ I RA+ + IT Y GFTV+ G +RR DDP N+ FL+ + G+VP ELEA + D+ L+DK+ E+Y APP Y AF G+GQ MG + EG + A+E P VD +P TTLQIRLH+G R+++ LN+ HT+R + AII G+G Y+L+ G+PP PL + T+EQAGL+GA++TQKL Sbjct: 1 MVNIVSLSSLRRDDENDEDHRQPNAYYAGGTHHGG--GSGLSVIGP----------GNGERADHISSIIARAQAMSNSESGASAQPNHVITFYRNGFTVNGGAYRRRDDPENRPFLEAIEQGMVPMELEADDR-SQHVDISLIDKRQEEYQAPPPPQYTAFSGEGQAMGDAASGEGTIFNRVNV-SAAERPVVDDKEPVTTLQIRLHNGTRLQSTLNLAHTMRDVHAIIEINGSGDQPYILLGGFPPRPLIVNLEDTIEQAGLKGAALTQKL 258
BLAST of mRNA_Ecto-sp13_S_contig1034.335.1 vs. uniprot
Match: H3HCQ5_PHYRM (Peroxin-1 n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HCQ5_PHYRM) HSP 1 Score: 203 bits (517), Expect = 8.170e-55 Identity = 129/274 (47.08%), Postives = 168/274 (61.31%), Query Frame = 1 Query: 1 MANFATLESL--KKDDEEEKKG---NAYYAGGARGAGRGGSGLNVMGPPPXXXXXXXXXNGDPHVQEIFRRAETGGPPGEDGGN--ERTITITMYNGGFTVDDGPFRRLDDPANKDFLKDLASGLVPKELEAGATPGKGTDVKLVDKQNEDYVAPP---YVAFGGDGQTMGASTVAEGAVMTATGAPEASEAPEVDASQPSTTLQIRLHDGRRVRAQLNMHHTVRHIQAIIAREGAGGGSYMLMAGYPPAPLS-DSSQTLEQAGLRGASITQKL 789 M N L SL + DD+E + G N YYAGGA G GGSGL+V+GP GD HV I RA+ G + IT Y GFTV+DGP+R D AN+ FL+ L G VP+ELE G + ++ LVDK+ EDYVAPP Y AF G+GQTMG++T A AV+ A ++E P +D +P+TTLQIRLH+G+R+R LN+ HT+R + AII AG Y L+AG+PP P+S D +QT+EQAGL+GA++TQKL Sbjct: 827 MVNIVGLSSLSNRSDDDERQSGDQPNQYYAGGATDRG-GGSGLSVIGP----------GGGDDHVANIIGRAQQDARAAAAAGESTQPRHIITFYREGFTVNDGPYRARSDAANRPFLEALERGHVPQELE-GENRNEPVEISLVDKREEDYVAPPAPAYTAFSGEGQTMGSATYAAEAVIQGDAA--SAERPVIDDKKPTTTLQIRLHNGQRLRETLNLDHTIRDLHAIIQLNDAGALPYTLLAGFPPRPVSSDLAQTIEQAGLKGAAVTQKL 1086
BLAST of mRNA_Ecto-sp13_S_contig1034.335.1 vs. uniprot
Match: A0A7S2RQY7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RQY7_9STRA) HSP 1 Score: 190 bits (482), Expect = 1.400e-54 Identity = 118/264 (44.70%), Postives = 163/264 (61.74%), Query Frame = 1 Query: 1 MANFATLESLKKDDEEEKKGNAYYAGGARGAGRGGSGLNVMGPPPXXXXXXXXXNGDPHVQEIFRRAETGGPPGEDGGNERTITITMYNGGFTVDDGPFRRLDDPANKDFLKDLASGLVPKELEAGATPGKGTDVKLVDKQNEDYVAPPYV-AFGGDGQTMGASTVAEGAVMTATGAPEASEAPEVDASQPSTTLQIRLHDGRRVRAQLNMHHTVRHIQAIIAREGAGGGSYMLMAGYPPAPLSDSSQTLEQAGLRGASITQKL 789 MA A L+ L K+ E+E K N YYAGG G GGSGLNV+GP DP+ I AE GG E IT+Y GGF VDDGPFR +DPAN+ F++ + G VP+EL+ + G V++ +K +++YVAP V +F G+GQ++G+ GAV+ A+ A + ++ EVD S+P+TT+ +RLH G+R+R +LN H V + A I REGA G SY+L +G+PPA +++ QTLE+AGL GA ITQ L Sbjct: 47 MARIAGLKDLGKEGEDEDK-NKYYAGG-NAQGGGGSGLNVIGPEGGAE--------DPY-SGILSNAEP-----MSGGEEAERVITLYQGGFVVDDGPFRSFEDPANQQFIQQMNQGFVPQELQEPGSAGS-VAVRIENKSSQEYVAPKGVKSFSGEGQSIGSKAAEAGAVVNASAA-SSEDSLEVDESKPTTTIALRLHTGKRIRLKLNATHRVGALVAAIKREGADGVSYVLQSGFPPAQITNFDQTLEEAGLTGAQITQTL 292 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1034.335.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1034.335.1 >prot_Ecto-sp13_S_contig1034.335.1 ID=prot_Ecto-sp13_S_contig1034.335.1|Name=mRNA_Ecto-sp13_S_contig1034.335.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=265bp MANFATLESLKKDDEEEKKGNAYYAGGARGAGRGGSGLNVMGPPPDGEGEback to top mRNA from alignment at Ecto-sp13_S_contig1034:350..6221- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1034.335.1 ID=mRNA_Ecto-sp13_S_contig1034.335.1|Name=mRNA_Ecto-sp13_S_contig1034.335.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5872bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1034:350..6221- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1034:350..6221- >mRNA_Ecto-sp13_S_contig1034.335.1 ID=mRNA_Ecto-sp13_S_contig1034.335.1|Name=mRNA_Ecto-sp13_S_contig1034.335.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=795bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1034:350..6221- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |