Homology
BLAST of mRNA_Ecto-sp13_S_contig10337.333.1 vs. uniprot
Match:
D7FRF2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRF2_ECTSI)
HSP 1 Score: 372 bits (954), Expect = 1.940e-120
Identity = 221/241 (91.70%), Postives = 225/241 (93.36%), Query Frame = 2
Query: 692 DIYDFDATGGSSRLTRSTKAKKRRGKKRESKLAPEAKATLTTEQRVAEILARTRSPAAIATAPTAGGGGDGDRGGSEDRPWTGGEGTGTFSDFAKSLRDLQQTGELDLSSEGAAGKSGRGSSESPRPNLRPXXXXXXXXXXXXXXXXXSSGPLDLSGSLVIGEADMESRRRLLRPPFGGRITDSPVTSSGLWDVPTAAPSLAELEYQLRKLSPLRGMAAGASKARGAGGAGRGSRSPALKS 1414
DIYDFDATGGSSRLTRS +AKKRRGKK+ESKLAP+AKATLTTEQRVAEILARTRSPAAIA APTA GGG DRGGSEDRPWTGGEGTGTFSDFAKSLRDLQQTGELDLSSEG AGKSG GSSESPRPNLRPXXXXXXXXXXXX SSGPLDLSGSLVIGEADMES RRLLRPP+GGRITDSPVTSSG WDVPTAAPSLAELEYQLRKLSPLRGMAA ASKARGAG AGRGSRSPALKS
Sbjct: 110 DIYDFDATGGSSRLTRSAEAKKRRGKKKESKLAPKAKATLTTEQRVAEILARTRSPAAIAKAPTASGGGGDDRGGSEDRPWTGGEGTGTFSDFAKSLRDLQQTGELDLSSEGVAGKSGLGSSESPRPNLRPXXXXXXXXXXXXDGDDESSGPLDLSGSLVIGEADMESHRRLLRPPYGGRITDSPVTSSGPWDVPTAAPSLAELEYQLRKLSPLRGMAAVASKARGAGSAGRGSRSPALKS 350
BLAST of mRNA_Ecto-sp13_S_contig10337.333.1 vs. uniprot
Match:
A0A6H5KN35_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN35_9PHAE)
HSP 1 Score: 223 bits (569), Expect = 9.480e-62
Identity = 143/154 (92.86%), Postives = 146/154 (94.81%), Query Frame = 2
Query: 731 LTRSTKAKKRRGKKRESKLAPEAKATLTTEQRVAEILARTRSPAAIATAPTAGGGGDGDRGGSEDRPWTGGEGTGTFSDFAKSLRDLQQTGELDLSSEGAAGKSGRGSSESPRPNLRPXXXXXXXXXXXXXXXXXSSGPLDLSGSLVIGEADME 1192
LTRS KAKKRRGKK+ESKLAPEAKATLTTEQRVAEILARTRSPAAIATAPTAG DRGGSEDRPWTGGEGTGTFSDFAKSLRDL+QTGELDLSSEGAAG+SGRGSSESPRPNLRP XXXXXXXXXXXXXXX SSGPLDLSGSLVIGEADME
Sbjct: 3 LTRSAKAKKRRGKKKESKLAPEAKATLTTEQRVAEILARTRSPAAIATAPTAGXXXXXDRGGSEDRPWTGGEGTGTFSDFAKSLRDLRQTGELDLSSEGAAGRSGRGSSESPRPNLRPPXXXXXXXXXXXXXXXESSGPLDLSGSLVIGEADME 156
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10337.333.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 1.94e-120 / Id = 91.70 Expect = 9.48e-62 / Id = 92.86 Sequence D7FRF2_ECTSI A0A6H5KN35_9PHAE
Match Name E-value Identity Description
D7FRF2_ECTSI 1.940e-120 91.70 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more] A0A6H5KN35_9PHAE 9.480e-62 92.86 Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Stop 1 Start 1 Model size 1414 Hectar predicted targeting category signal peptide Exons 6 Cds size 801
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1681462524.1499798-UTR-Ecto-sp13_S_contig10337:1707..1922 1681462524.1499798-UTR-Ecto-sp13_S_contig10337:1707..1922 Ectocarpus species13 EcNAP12_S_4_19m UTR Ecto-sp13_S_contig10337 1708..1922 + 1681462524.192266-UTR-Ecto-sp13_S_contig10337:3698..3706 1681462524.192266-UTR-Ecto-sp13_S_contig10337:3698..3706 Ectocarpus species13 EcNAP12_S_4_19m UTR Ecto-sp13_S_contig10337 3699..3706 + 1681462524.2005808-UTR-Ecto-sp13_S_contig10337:4251..4419 1681462524.2005808-UTR-Ecto-sp13_S_contig10337:4251..4419 Ectocarpus species13 EcNAP12_S_4_19m UTR Ecto-sp13_S_contig10337 4252..4419 + 1681462524.209642-UTR-Ecto-sp13_S_contig10337:5509..5541 1681462524.209642-UTR-Ecto-sp13_S_contig10337:5509..5541 Ectocarpus species13 EcNAP12_S_4_19m UTR Ecto-sp13_S_contig10337 5510..5541 + 1681462524.2190914-UTR-Ecto-sp13_S_contig10337:5699..5889 1681462524.2190914-UTR-Ecto-sp13_S_contig10337:5699..5889 Ectocarpus species13 EcNAP12_S_4_19m UTR Ecto-sp13_S_contig10337 5700..5889 +
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1681462524.1643846-CDS-Ecto-sp13_S_contig10337:1922..2436 1681462524.1643846-CDS-Ecto-sp13_S_contig10337:1922..2436 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig10337 1923..2436 + 1681462524.176771-CDS-Ecto-sp13_S_contig10337:2929..3046 1681462524.176771-CDS-Ecto-sp13_S_contig10337:2929..3046 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig10337 2930..3046 + 1681462524.1844501-CDS-Ecto-sp13_S_contig10337:3528..3698 1681462524.1844501-CDS-Ecto-sp13_S_contig10337:3528..3698 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig10337 3529..3698 +
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10337.333.1
>prot_Ecto-sp13_S_contig10337.333.1 ID=prot_Ecto-sp13_S_contig10337.333.1|Name=mRNA_Ecto-sp13_S_contig10337.333.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=267bp
MYQRYLLCLIFVCVDMATRPHVQAKYDPHKQRVPLGIHFVSLSRFDGGRG back to top mRNA from alignment at Ecto-sp13_S_contig10337:1708..5889+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10337.333.1 ID=mRNA_Ecto-sp13_S_contig10337.333.1|Name=mRNA_Ecto-sp13_S_contig10337.333.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4182bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10337:1708..5889+ (Ectocarpus species13 EcNAP12_S_4_19m)AGCGTACGTACGCCAAGGTTGATTCCAGATCGCGGACAACCGCTCCACGT
GCATCCAAAATCTAAGATATTCCTCTCTCCAATACTACAGATGGGAGTGT
GGTTTTACGTTGAGCATCTTCATTCGCACTAGGCTCAGGCTGCACACACT
GCCCCCGGCAGGCGAGCCCGGCCCCAGACGTATGCATACAGGCGGACTAC
CCACAAAAATGTGGC ATGTACCAAAGATACCTCCTCTGTTTGATCTTTGT
GTGCGTAGATATGGCGACACGACCACATGTACAGGCGAAGTACGATCCCC
ATAAACAACGCGTACCACTTGGAATTCATTTTGTCTCTTTAAGTAGGTTT
GACGGAGGCAGAGGACACGAACACGAAACAACAACACAAGCACCAAAATT
GAGTTGTCCTCATCGTCCTCGTCCTCCCTTGTCTGCCCTTGAAACTCAAG
CAGGCGAATCCCCGTCCCCGCTATCGGGGGGTAGCGACGCCGGCATCGGC
GGCGGCGGCTTTTCCCCCCTTTCCCTCTCCCTCTCCCTCTCCGACAGCGG
CGGCGCCGGCGGCGAGCCTGGTAAACGCTACGGCGACGGGCGTCGGGGGG
GGCATGGGCTCAGCGAGTACGTGGGCGGGGTTGAGAGGGGGCGACGCGGA
GGTGGTGTTGGGAATGATGACAACGAGGGGGGGGGGGCGGTGATATCTAT
GACTTCGACGCCACGGGTGGGTCGAGCAG GTGGGGGGGGGGGTGGGGGGT
GCGTTTTTTCCTTCGCGGGGGCCCGTGGAGGCATGGGGTACGGCGCGTTG
GAGGAATTCCCTGTGTGCGTTGATGTGCACTCCCGCCACTGGCTGCTCCC
TAGATCTTCTTCTATGCTCAAGCATCGTCCTGCTGGCGCTCCAGTTTCCA
TTACCCGCAATATCGGTTGTTGTTCTGTGCTGCTGCTTTTCTATTCCGTT
CTACTTTGGCGTTTGTATCCCTCGTCCTTGTGACACAAAGGACAAAGCAC
GAGCTAAGCTATTTATCGTCCTACCGATCGCCGTGAGGCAAACATGCACA
GGTCGCCTGTGCCCTACTGATCACAAGGGACATACATATGTACCCTTCAC
AAGAGCTGGCTTGATCTGTAGGAATCTGTTATTTGTGTGCCTCCTTTTCT
TCCGTGACCTTTACGCACTCTCTTGTTGCCCTTTTCGGGCCGGGGCTACA
CAACCGTGTGCGCCGTGGGCAGGCTTACGCGATCTACGAAAGCTAAGAAG
AGGCGGGGCAAGAAGAGGGAGAGTAAGCTTGCGCCCGAGGCAAAGGCGAC
GCTCACCACGGAGCAACGAGTGGCGGAAATCCTGGCCAG GTAGATAAAAT
AGCACTCTTACGTGTGCCCTTCATCACGCAGAAGTCAGAGTATTTTGGGA
GGCGTATGTCCAGACGGGAAACGGAAGCCAGGAGTTGCACGTTTGCACCG
CATTTTGAGGTCGTCTCCTGCGGGAGGAAGAAGAGGGACAGGGGGGGATG
ACGCAAGCGCATGTTTGGGGGGGACGTATTCTCTTTTGTTTCCTGGGTTA
GGACGCGTAATGTCTCGGGACGTTTTTTTTTTTCTTGTTTCGAGCAATTT
TTGGGTAGGCGCAAAACGGAGTCGGACGATTTGTGTCTTGCTGTACGTGG
ATCGCTCGCTTGTCGAACGGCGTGTTCGAAGTGCACACTCAAACAGAGGT
GTTCGGCTCGATCGGCCCCTCCGTGTGGCACACCCGCGGCCAGAACTCCT
GCTGCTGTGCTTGATGTTATCCCTTGCACTCCGCTTGTCGCCGAAAAACT
GACCCCCAACAACTCGCGCAGGACAAGATCTCCCGCTGCCATCGCGACTG
CGCCGACCGCTGGCGGCGGTGGCGACGGCGACAGAGGCGGCAGCGAAGAC
CGGCCTTGGACGGGCGGAGAAGGAACGGGGACTTTCAGCGACTTCGCCAA
GTCTTTGCGAGATCTGCAGCAGACCGGGGAACTGGACTTGA GCTCGGAG G
TGTGTGTTGACCGTACACCCGATGCTGTCGTGTCTGCTTTGCTGTGTGTT
GCTTTAGGGGGAAGGTTCGTCAGCAGCGCCGCGGTAGTAGGTTCGCATAC
GAGAACGTGTAGGATGCTTGTGTGGCAGGCTGGCTGGCTGGCTGCCTTGG
TGATGAAGGCTCATATCTTGCTTCTGGCCGTTGGACTGACTCATTCCGAT
GCCCCCGCTCCCGGCGTGCCGCACCGTAGGTACTATTTTCAGGGCGCTAC
TCTCTCTATCTCTCCATCTCTCTTTCTTTCTATGTATCGACCTCTTTCTT
ATCAAGTCTCATTTTTGTACGGTGCCGCAGCTGCTGCACGGGCGTTCTCT
CGAAAGCCATTGTGCCGCCGACCTCGGCTCTTAATCCGGGGTATTGCCTG
TAGCGTCGTTCTGTGCATGGGATGTCCGTCCGCTCTGCCATGTAATTCCA
TCACCACCTACGTACCACCTTGTCCCCAACCGTCTCCTACCTCCTCCTGC
CGCCCCAACGGGATCCTCTCTTGTCGGTCCCTTTTCGTGCGTAGGGTGCG
GCGGGCAAGAGCGGGCGCGGCTCGTCGGAATCGCCCCGCCCGAACCTAAG
GCCGCCGCCGCCGGAACGCCTTCCGCCCCAACACCACCGCGACGACGACG
ACGAGAGCAGCGGGCCGCTGGATCTGTCCGGATCCCTGGTGATAGGCGAG
GCCGACATGGAG GTGGGCGGGTACGCCCGCGCTCGTCAGGCGGAGGAGGA
GCAGGAGGAGGGGCGACGGAAAGGGAGAGGAGGGGACGGCCGCGGTGGTG
GTGGGGTTGGAGGGAAGGGAGAGAGCGAGCCGGCGGCGGTACCGTCTGCA
GAGAGAGCCCCTGAGGAGGAGGAGGAGGACGAGGACGAGGACGAGGACGA
GGACGAGGACGAGGGTCAAGCCGATGATGGTCAGGGCTCGCCGCGATCAG
GGGCGGGGAGCGAGGACACGGGTTACAACGACGAAGGTTTCGAGGAGCCA
CCACCGGAAGAAGAAGCGGAGGGAGAGCACGGCGGGGAAAGGCAACAGCC
ACCAGGTCAGAAAGAACAAGAGCAGCGACTGCGCCCTACTGCAGGAGTCC
CCGTTCCCGCCGACGTCTTCCCAGGCGGTGGTAGCGGTGGCGGCCGAATG
GCCAGCCCTCTTTCCGGACGGAGCCCTGCAGCCTTGTCCACCGTGACCGG
CGGCGGCGGCGGCGGCCGTGGCGGCAGAGCAGTAGCAGCACTGGCCAGTC
CAAGTGCCCGGAGCACCGCTAGCCTTCCACCCTCGCCGCCCGCGTCGCCG
CCCCCGGCCGCCGCTTCGCCGGATCGCCGCCGGAGGGCCGAGGGAGGAGG
AGGGCCTTCGGCAACGGTCGTGGGAACAACGGCTCTAGAGTCAGAGGCCT
TCAGCGAGGAGCAGGAAGAGGCGCGGCGGCGCCGGGCTGCGCCCCAGCAG
CAGCCCCCTCCTCCGTCGCCGCCCCCACCTCCCCCGCCGTCGCACTTACC
GGAGGAAGAGCGAACGAGCGATGGCGCGTGGTATGCTGAAGGAGGCGCGG
GAGGCAGCAGCATCAGCAGCGGCGGCGGCGGTGGGCGGAAGAAGGCGGAG
GCGGCCTCCTGGGTAAAGGGGCAGGGGTCGACGCATGATCGTGATCGGCA
AGGGGCGGCAGGCGCGACGACAACAGCAACGACGATGACCCTTGCGCGGG
ACGTGACCCCGTCGTTCCTCCGATACCCTTCCGCCGGCCGCGGCCGGGCG
GCCCGCGGACCCAATTCCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGC
AGAGCCGTCGACGGCTGCTGCGCCCTCCGTTCGG GTAAGCGACAACCGCC
GGCCGCGGCCTTCGACGGACGGTGGTGGTCTCGATGGCGGTGTCGGACGG
CACCGCCACGGGGGACACGACCAACACAACCATCCCGCCGCCCCCGTCGC
TGCCGCCGCCGCCGCCGCGGGCGATCTTCTCCTCCCCGGCAGGGGGCGGA
TAACGGACAGCCCCGTCACGTCCAGCGGGCTCTGGGACGTACCCACGGCG
GCCCCGTCGCTCGCGGAGCTAGAGTACCAGCTCCGAAAGCTGAGCCCGCT
CCGCGGCATGGCGGCCGGGGCGAGCAAGGCCCGCGGCGCCGGCGGCGCCG
GCCGTGGCAGCAGATCTCCCGCTCTTAAGAGC back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10337:1708..5889+
>mRNA_Ecto-sp13_S_contig10337.333.1 ID=mRNA_Ecto-sp13_S_contig10337.333.1|Name=mRNA_Ecto-sp13_S_contig10337.333.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=801bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10337:1708..5889+ (Ectocarpus species13 EcNAP12_S_4_19m) back to top