mRNA_Ecto-sp13_S_contig10332.330.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10332.330.1 vs. uniprot
Match: D8LFB5_ECTSI (Calcium-transporting ATPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFB5_ECTSI) HSP 1 Score: 413 bits (1061), Expect = 3.010e-134 Identity = 211/218 (96.79%), Postives = 215/218 (98.62%), Query Frame = 1 Query: 28 IKVLARSSPDDKHLLVTRLNGTALPRNRSEWEELHPELDWNVDRDRTLPGYWDEWVASRADGGEVVGATGDGTNDAPALKTADVGLSMGLSGTDVAKDASDIVIMDDRFSSIVKAVLWGRSVFDNIRKFLQFQLTVNVVALTLTFLSAVSGYEPPLNAVMMLWVNLIMDTMGALALGTEPPTLALLRRRPYKRNSSLINRIMWRHIAVQAVYQLVLLT 681 ++VLARSSPDDKHLLVTRLNGTALPR+RSEWEELHPELDWNVDRD TLPGY DEW+ASR DGGEVVGATGDGTNDAPALKTADVGLSMGLSGTDVAKDASDIVIMDDRFSSIVKAVLWGRSVFDNIRKFLQFQLTVNVVALTLTFLSAVSGYEPPLNAVMMLWVNLIMDTMGALALGTEPPTLALLRRRPYKRNSSLINRIMWRHIAVQAVYQLVLLT Sbjct: 695 LQVLARSSPDDKHLLVTRLNGTALPRDRSEWEELHPELDWNVDRDCTLPGYRDEWLASRPDGGEVVGATGDGTNDAPALKTADVGLSMGLSGTDVAKDASDIVIMDDRFSSIVKAVLWGRSVFDNIRKFLQFQLTVNVVALTLTFLSAVSGYEPPLNAVMMLWVNLIMDTMGALALGTEPPTLALLRRRPYKRNSSLINRIMWRHIAVQAVYQLVLLT 912
BLAST of mRNA_Ecto-sp13_S_contig10332.330.1 vs. uniprot
Match: A0A7R9WQ07_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WQ07_9STRA) HSP 1 Score: 330 bits (846), Expect = 5.930e-110 Identity = 165/217 (76.04%), Postives = 191/217 (88.02%), Query Frame = 1 Query: 28 IKVLARSSPDDKHLLVTRLNGTALPRNRSEWEELHPELDWNVDRDRTLPGYWDEWVASRADGGEVVGATGDGTNDAPALKTADVGLSMGLSGTDVAKDASDIVIMDDRFSSIVKAVLWGRSVFDNIRKFLQFQLTVNVVALTLTFLSAVSGYEPPLNAVMMLWVNLIMDTMGALALGTEPPTLALLRRRPYKRNSSLINRIMWRHIAVQAVYQLVLL 678 ++VLARSSP+DKH+LV RLNG +P+ + +W+E+HP D+ ++D LPGY +EW +R GEVVG TGDGTND PALK ADVGLSMGLSGTDVAK+ASDI+IMDDRFSSIVKAVLWGRSVFDNIRKFLQFQLTVNVVALT+TFLSA++GY+PPLNAVMMLWVNLIMDTMGALALGTEPPTL LL RRPY+R++SLI+R MWR+I VQA YQL LL Sbjct: 21 LQVLARSSPEDKHILVQRLNGGLMPQTKEQWDEIHPGHDYEKEKDLLLPGYKEEWSENRGGVGEVVGVTGDGTNDGPALKAADVGLSMGLSGTDVAKNASDIIIMDDRFSSIVKAVLWGRSVFDNIRKFLQFQLTVNVVALTITFLSALAGYKPPLNAVMMLWVNLIMDTMGALALGTEPPTLELLDRRPYRRDASLISRPMWRNIFVQATYQLALL 237
BLAST of mRNA_Ecto-sp13_S_contig10332.330.1 vs. uniprot
Match: A0A7S1CYI6_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1CYI6_CYCTE) HSP 1 Score: 330 bits (846), Expect = 1.350e-109 Identity = 169/217 (77.88%), Postives = 187/217 (86.18%), Query Frame = 1 Query: 28 IKVLARSSPDDKHLLVTRLNGTALPRNRSEWEELHPELDWNVDRDRTLPGYWDEWVASRADGGEVVGATGDGTNDAPALKTADVGLSMGLSGTDVAKDASDIVIMDDRFSSIVKAVLWGRSVFDNIRKFLQFQLTVNVVALTLTFLSAVSGYEPPLNAVMMLWVNLIMDTMGALALGTEPPTLALLRRRPYKRNSSLINRIMWRHIAVQAVYQLVLL 678 ++VLARSSP+DKH+LV RLNG +P N EW + HP D+ +RD+ LPGY +EWV SR GEVVG TGDGTND PALK ADVGLSMGLSGTDVAK ASDIVIMDD FSSIVKAVLWGRSVFDNIRKFLQFQLTVNVVALT+TFLSAV+GY+PPLNAVMMLWVNLIMDTMGALALGTEPPT LL RRPYKR++SLI+R MWR+I VQA YQL +L Sbjct: 76 LQVLARSSPEDKHILVQRLNGGLMPENEKEWLDAHPGRDYMKERDQLLPGYKEEWVTSRGGVGEVVGVTGDGTNDGPALKAADVGLSMGLSGTDVAKKASDIVIMDDNFSSIVKAVLWGRSVFDNIRKFLQFQLTVNVVALTITFLSAVAGYKPPLNAVMMLWVNLIMDTMGALALGTEPPTGELLDRRPYKRDASLISRPMWRNILVQATYQLAVL 292
BLAST of mRNA_Ecto-sp13_S_contig10332.330.1 vs. uniprot
Match: A0A7S2H9Q5_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2H9Q5_9STRA) HSP 1 Score: 329 bits (843), Expect = 1.100e-108 Identity = 165/217 (76.04%), Postives = 189/217 (87.10%), Query Frame = 1 Query: 28 IKVLARSSPDDKHLLVTRLNGTALPRNRSEWEELHPELDWNVDRDRTLPGYWDEWVASRADGGEVVGATGDGTNDAPALKTADVGLSMGLSGTDVAKDASDIVIMDDRFSSIVKAVLWGRSVFDNIRKFLQFQLTVNVVALTLTFLSAVSGYEPPLNAVMMLWVNLIMDTMGALALGTEPPTLALLRRRPYKRNSSLINRIMWRHIAVQAVYQLVLL 678 ++VLARSSP+DKH+LV RLNG +P + +W E+HP D+ +D LPGY +EW SR GEVVG TGDGTND PALK ADVGLSMG+SGTDVAK+ASDI+IMDD+FSSIVKAVLWGRSVFDNIRKFLQFQLTVNVVALT+TFLSAV+GY+PPLNAVMMLWVNLIMDTMGALALGTEPPT++LL RRPYKR++SLI+R MWR+I VQA YQL LL Sbjct: 82 LQVLARSSPEDKHILVQRLNGGVMPADEQQWLEVHPGKDYATQKDLLLPGYKEEWAKSRGGVGEVVGVTGDGTNDGPALKAADVGLSMGISGTDVAKNASDIIIMDDKFSSIVKAVLWGRSVFDNIRKFLQFQLTVNVVALTITFLSAVAGYKPPLNAVMMLWVNLIMDTMGALALGTEPPTMSLLDRRPYKRDASLISRPMWRNIFVQATYQLALL 298
BLAST of mRNA_Ecto-sp13_S_contig10332.330.1 vs. uniprot
Match: A0A7S0B2T2_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0B2T2_9STRA) HSP 1 Score: 325 bits (834), Expect = 4.570e-108 Identity = 168/218 (77.06%), Postives = 186/218 (85.32%), Query Frame = 1 Query: 28 IKVLARSSPDDKHLLVTRLNGTALPRNRSEWEELHPELDWNVDRDRTLPGYWDEWVASRADG-GEVVGATGDGTNDAPALKTADVGLSMGLSGTDVAKDASDIVIMDDRFSSIVKAVLWGRSVFDNIRKFLQFQLTVNVVALTLTFLSAVSGYEPPLNAVMMLWVNLIMDTMGALALGTEPPTLALLRRRPYKRNSSLINRIMWRHIAVQAVYQLVLL 678 ++VLARSSP+DKH+LV RLNG +P +W E+HP D+ +D+ LPG+ DEW SR G GEVVG TGDGTND PALK ADVGLSMG+SGTDVAK+ASDIVIMDD FSSIVKAVLWGRSVFDNIRKFLQFQLTVNVVALT+TFLSAV GY+PPLNAVMMLWVNLIMDTMGALALGTEPPT LL RRPYKR++SLINR MWR+I VQA YQL LL Sbjct: 26 LQVLARSSPEDKHMLVQRLNGGLMPTTEEQWLEVHPGKDYATQKDKLLPGHMDEWALSRRGGVGEVVGVTGDGTNDGPALKAADVGLSMGISGTDVAKNASDIVIMDDNFSSIVKAVLWGRSVFDNIRKFLQFQLTVNVVALTITFLSAVCGYKPPLNAVMMLWVNLIMDTMGALALGTEPPTNDLLDRRPYKRDASLINRPMWRNILVQATYQLGLL 243
BLAST of mRNA_Ecto-sp13_S_contig10332.330.1 vs. uniprot
Match: A0A7S1YUU7_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1YUU7_TRICV) HSP 1 Score: 329 bits (844), Expect = 6.000e-107 Identity = 166/217 (76.50%), Postives = 185/217 (85.25%), Query Frame = 1 Query: 28 IKVLARSSPDDKHLLVTRLNGTALPRNRSEWEELHPELDWNVDRDRTLPGYWDEWVASRADGGEVVGATGDGTNDAPALKTADVGLSMGLSGTDVAKDASDIVIMDDRFSSIVKAVLWGRSVFDNIRKFLQFQLTVNVVALTLTFLSAVSGYEPPLNAVMMLWVNLIMDTMGALALGTEPPTLALLRRRPYKRNSSLINRIMWRHIAVQAVYQLVLL 678 ++VLARSSP+DKH LV RLNG +P N +W + HP D+ RD LPGY +EW A+R GEVVG TGDGTND PALK ADVGLSMG+SGTDVAK+ASDI+IMDD FSSIVKAVLWGRSVFDNIRKFLQFQLTVNVVALT+TFLSAV+GY+PPLNAVMMLWVNLIMDTMGALALGTEPPT LL RRPY+R++SLINR MWR+I VQA YQL LL Sbjct: 231 LQVLARSSPEDKHRLVQRLNGALMPENEQQWRDAHPGKDYATQRDLLLPGYMEEWAAARGGVGEVVGVTGDGTNDGPALKAADVGLSMGISGTDVAKNASDIIIMDDNFSSIVKAVLWGRSVFDNIRKFLQFQLTVNVVALTITFLSAVAGYKPPLNAVMMLWVNLIMDTMGALALGTEPPTQELLDRRPYRRDASLINRPMWRNILVQASYQLALL 447
BLAST of mRNA_Ecto-sp13_S_contig10332.330.1 vs. uniprot
Match: A0A7S3HTH3_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HTH3_9STRA) HSP 1 Score: 323 bits (828), Expect = 1.500e-106 Identity = 165/218 (75.69%), Postives = 189/218 (86.70%), Query Frame = 1 Query: 28 IKVLARSSPDDKHLLVTRLNGTALPRNRSEWEELHPELDWNVDRDRTLPGYWDEWVASRADG-GEVVGATGDGTNDAPALKTADVGLSMGLSGTDVAKDASDIVIMDDRFSSIVKAVLWGRSVFDNIRKFLQFQLTVNVVALTLTFLSAVSGYEPPLNAVMMLWVNLIMDTMGALALGTEPPTLALLRRRPYKRNSSLINRIMWRHIAVQAVYQLVLL 678 ++VLARSSPDDKH LVTRLNGTALP ++ WE +HPE +W D+D LPGY +EW +R DG GEVVG TGDGTND PALK ADVGLSMGL+GTDVAK+ASDIVI+DD FSSIVK+V+WGRSVFDNIRKFLQFQLTVNVVALTLTF+ AV+G EPPLNAVMMLWVNLIMDTMGALALGTEPP+ LL+RRPYKRN+SL++ M R+I VQ V+Q+ LL Sbjct: 47 LQVLARSSPDDKHTLVTRLNGTALPDSQEAWEAIHPEGNWAKDKDLLLPGYREEWTRARHDGVGEVVGVTGDGTNDGPALKAADVGLSMGLTGTDVAKEASDIVILDDNFSSIVKSVMWGRSVFDNIRKFLQFQLTVNVVALTLTFVCAVTGSEPPLNAVMMLWVNLIMDTMGALALGTEPPSAKLLQRRPYKRNASLVSNKMARNIGVQFVFQMALL 264
BLAST of mRNA_Ecto-sp13_S_contig10332.330.1 vs. uniprot
Match: K8YVJ0_NANGC (Autoinhibited calcium atpase n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=K8YVJ0_NANGC) HSP 1 Score: 327 bits (838), Expect = 4.930e-105 Identity = 167/217 (76.96%), Postives = 188/217 (86.64%), Query Frame = 1 Query: 28 IKVLARSSPDDKHLLVTRLNGTALPRNRSEWEELHPELDWNVDRDRTLPGYWDEWVASRADGGEVVGATGDGTNDAPALKTADVGLSMGLSGTDVAKDASDIVIMDDRFSSIVKAVLWGRSVFDNIRKFLQFQLTVNVVALTLTFLSAVSGYEPPLNAVMMLWVNLIMDTMGALALGTEPPTLALLRRRPYKRNSSLINRIMWRHIAVQAVYQLVLL 678 ++VLARSSPDDKH LV RLNGT LP +++EWE+ HP W +RD LPGY +EW SR GEVVG TGDGTNDAPAL+ ADVGLSMGLSGT+VAK+ASDIVIMDD F+SIVKAVLWGR VFDNIRKFLQFQLTVNVVALT+TFLSAVSGY+PPLNAVMMLWVNLIMDTMGALALGTE PT LL RRPYKRN+SLI+R MWR+I VQ+ YQ+++L Sbjct: 268 LQVLARSSPDDKHTLVARLNGT-LPEDQAEWEKAHPGKSWERERDGLLPGYLEEWAVSRGGVGEVVGVTGDGTNDAPALRVADVGLSMGLSGTEVAKEASDIVIMDDNFASIVKAVLWGRGVFDNIRKFLQFQLTVNVVALTITFLSAVSGYDPPLNAVMMLWVNLIMDTMGALALGTEAPTPNLLVRRPYKRNASLISRTMWRNILVQSGYQIIVL 483
BLAST of mRNA_Ecto-sp13_S_contig10332.330.1 vs. uniprot
Match: A0A6U6L660_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6L660_9STRA) HSP 1 Score: 334 bits (856), Expect = 5.040e-104 Identity = 168/217 (77.42%), Postives = 189/217 (87.10%), Query Frame = 1 Query: 28 IKVLARSSPDDKHLLVTRLNGTALPRNRSEWEELHPELDWNVDRDRTLPGYWDEWVASRADGGEVVGATGDGTNDAPALKTADVGLSMGLSGTDVAKDASDIVIMDDRFSSIVKAVLWGRSVFDNIRKFLQFQLTVNVVALTLTFLSAVSGYEPPLNAVMMLWVNLIMDTMGALALGTEPPTLALLRRRPYKRNSSLINRIMWRHIAVQAVYQLVLL 678 ++VLARSSP+DKH LV RLNG +P N EW E+HP D+ ++D LPGY +EW ASR GEVVG TGDGTND PALK ADVGLSMG+SGTDVAK+ASDI+IMDD+FSSI+KAVLWGRSVFDNIRKFLQFQLTVNVVALT+TFLSAV+GY+PPLNAVMMLWVNLIMDTMGALALGTEPPTL LL RRPYKR++SLINR MWR+I +QA YQL LL Sbjct: 761 LQVLARSSPEDKHFLVQRLNGGLMPSNEKEWLEVHPGRDFEKEKDNLLPGYQEEWSASRGGVGEVVGVTGDGTNDGPALKAADVGLSMGISGTDVAKNASDIIIMDDKFSSIIKAVLWGRSVFDNIRKFLQFQLTVNVVALTITFLSAVAGYKPPLNAVMMLWVNLIMDTMGALALGTEPPTLELLDRRPYKRDASLINRPMWRNILIQAGYQLALL 977
BLAST of mRNA_Ecto-sp13_S_contig10332.330.1 vs. uniprot
Match: A0A7S1ZAB0_9STRA (Calcium-transporting ATPase n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZAB0_9STRA) HSP 1 Score: 331 bits (848), Expect = 4.590e-103 Identity = 167/217 (76.96%), Postives = 189/217 (87.10%), Query Frame = 1 Query: 28 IKVLARSSPDDKHLLVTRLNGTALPRNRSEWEELHPELDWNVDRDRTLPGYWDEWVASRADGGEVVGATGDGTNDAPALKTADVGLSMGLSGTDVAKDASDIVIMDDRFSSIVKAVLWGRSVFDNIRKFLQFQLTVNVVALTLTFLSAVSGYEPPLNAVMMLWVNLIMDTMGALALGTEPPTLALLRRRPYKRNSSLINRIMWRHIAVQAVYQLVLL 678 ++VLARSSPDDK++LV RLNG +P + EW E+HP D+ +D LPGY +EW SR GEVVG TGDGTND PALK ADVGLSMG+SGTDVAK+ASDI+IMDD+FSSIVKAVLWGRSVFDNIRKFLQFQLTVNVVALT+TFLSAV+GY+PPLNAVMMLWVNLIMDTMGALALGTEPPT++LL RRPYKR+SSLI+R MWR+I VQA YQL LL Sbjct: 732 LQVLARSSPDDKNILVQRLNGGIMPSSEEEWLEIHPGKDFATQKDLLLPGYKEEWARSRGGVGEVVGVTGDGTNDGPALKAADVGLSMGISGTDVAKNASDIIIMDDKFSSIVKAVLWGRSVFDNIRKFLQFQLTVNVVALTITFLSAVAGYKPPLNAVMMLWVNLIMDTMGALALGTEPPTMSLLERRPYKRDSSLISRPMWRNILVQATYQLALL 948 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10332.330.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10332.330.1 >prot_Ecto-sp13_S_contig10332.330.1 ID=prot_Ecto-sp13_S_contig10332.330.1|Name=mRNA_Ecto-sp13_S_contig10332.330.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=228bp MSCLILSRLIKVLARSSPDDKHLLVTRLNGTALPRNRSEWEELHPELDWNback to top mRNA from alignment at Ecto-sp13_S_contig10332:2993..5341+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10332.330.1 ID=mRNA_Ecto-sp13_S_contig10332.330.1|Name=mRNA_Ecto-sp13_S_contig10332.330.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2349bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10332:2993..5341+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10332:2993..5341+ >mRNA_Ecto-sp13_S_contig10332.330.1 ID=mRNA_Ecto-sp13_S_contig10332.330.1|Name=mRNA_Ecto-sp13_S_contig10332.330.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=684bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10332:2993..5341+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |